Some progress on buffer plots, not finished #173
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| #pull_request: | |
| # branches: | |
| # - master | |
| #schedule: | |
| # * is a special character in YAML so we have to quote this string | |
| # 3am Pacific = 11am UTC | |
| # https://crontab.guru is your friend | |
| # - cron: '0 17 * * *' | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-22.04 | |
| env: | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" | |
| vsni_LICENSE: ${{ secrets.vsni_LICENSE }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Set up RSPM | |
| run: | | |
| echo "options(repos = c(CRAN = 'https://packagemanager.rstudio.com/all/__linux__/focal/latest'))" >> ~/.Rprofile.site | |
| echo "options(HTTPUserAgent = sprintf('R/%s R (%s)', getRversion(), paste(getRversion(), R.version['platform'], R.version['arch'], R.version['os'])))" >> ~/.Rprofile.site | |
| shell: bash | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Get R and OS version | |
| id: get-version | |
| run: | | |
| cat("##[set-output name=os-version;]", sessionInfo()$running, "\n", sep = "") | |
| cat("##[set-output name=r-version;]", R.Version()$version.string, sep = "") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{ inputs.cache-version }}-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}- | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes")) | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| - name: Create and populate .Renviron file | |
| run: echo vsni_LICENSE="vsni_LICENSE" >> ~/.Renviron | |
| # - name: Licence ASreml | |
| # run: | | |
| # remotes::install_github("") | |
| # biometryassist::install_asreml() | |
| # shell: Rscript {0} | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |