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BiometryTraining 1.0.0

Final release of BiometryTraining

This package will no longer be developed. All future development work will be undertaken in the biometryassist package.

Major changes

  • Created a variogram function that does not rely on ASreml (#33)
  • Implemented autoplot() function for design() and mct.out(). (#60)
  • Coloured plots (autoplot.design() and variogram()) now gain a palette argument to enable colour blind friendly colours in the plots if desired (as well as some other palettes). (#85)

Minor changes

  • Enabled model call to be displayed on resplot() for easy comparison between several models (#81)

Bug fixes

  • More sanity checking of inputs in design() (#69)
  • Various bug fixes in logl.test() (#31 and #51)

BiometryTraining 0.9.0

Major changes

  • resplot() function now supports models from the packages lme4, nlme, and sommer.
  • mct.out() function now supports models from the packages lme4 and nlme. Support for sommer models is in progress.

Minor changes

  • Fixed some bugs in logl.test().
  • Unknown arguments in design() are no longer silently ignored (#77)
  • Enabled a way for split plot designs to be arranged row-wise or column-wise (#68)
  • Added split plot treatment labels to the output plot (#78)
  • Prevented misspelled arguments passed in the ellipsis from being silently ignored (#77)

BiometryTraining 0.8.0

Minor changes

  • Updates to the documentation of mct.out().
  • Fixed resplot() so that plot C is now easier to interpret because it's not as stretched (#72)
  • Switched from patchwork to cowplot (#74)
  • Reduced default height of labels in mct.out() plot (#67)

Bug fixes

  • Fixed a bug where factorial latin square designs were not generated properly (#62)
  • Updated labels on design outputs so that they are consistent and prevent 3 way factorials (#65)
  • Fixed up labelling in split plot designs (#64)
  • Fixed an issue where incorrect significance values in mct.out() give a negative confidence interval (#73)
  • Fixed a bug where crossed designs didn't produce spreadsheet output (#66)

BiometryTraining 0.7.1

Bug fixes

  • Fixed a bug based on an old version of patchwork by requiring patchwork version 1.1.0 or later.

BiometryTraining 0.7.0

  • Added a NEWS.md file to track changes to the package.

Major changes

  • Introduced the design() function to create designs and produce the output in one step. (#40)
  • resplt() now automatically produces multiple residual plots in situations like multisite analyses (#53)
  • Updated the look of resplt() and included output of the Shapiro-Wilk's test for normality.
  • Bumped required minimum version of R to 3.6.0.

Minor changes

  • Added the alias resplot() which is identical to resplt() but may be easier to spell.
  • Organised the functions on the website under major headings.

Bug fixes

  • Fixed a bug where aliased treatment levels would cause mct.out() to crash (#47)
  • Fixed a bug where logltest() could infinitely cycle with models that don't converge (#50)
  • Fixed a bug where logltest() would print all the terms on the boundary.
  • Reduced the amount of warnings and messages printed by logltest() (#17)