diff --git a/bin/validate.py b/bin/validate.py index 24ea04e4..535e1ebb 100755 --- a/bin/validate.py +++ b/bin/validate.py @@ -771,19 +771,20 @@ def produce(ctx, group, metadata_dir, gpad, gpad_gpi_output_version, ttl, target click.echo(os.path.split(end_gaf)[0]) temp_output_gaf_path = os.path.join(os.path.split(end_gaf)[0], "{}_temp.gaf".format(dataset)) click.echo("temp_output_gaf_path: {}".format(temp_output_gaf_path)) - click.echo("matching_gpi_path".format(gpi)) + click.echo("matching_gpi_path: {}".format(gpi)) isoform_fixed_gaf = fix_pro_isoforms_in_gaf(end_gaf, gpi, ontology_graph, temp_output_gaf_path) - click.echo("isoform_fixed_gaf: ".format(isoform_fixed_gaf)) + click.echo("isoform_fixed_gaf: {}".format(isoform_fixed_gaf)) final_output_gaf_path = os.path.join(os.path.split(end_gaf)[0], "{}.gaf".format(dataset)) click.echo("Rename the temporary isoform fixed file to the final GAF...") os.rename(temp_output_gaf_path, final_output_gaf_path) - click.echo("final_output_gaf_path: ".format(final_output_gaf_path)) + click.echo("final_output_gaf_path: {}".format(final_output_gaf_path)) click.echo("Producing final GPI after all GAF corrections...") final_gpi = produce_gpi(dataset, absolute_target, final_output_gaf_path, ontology_graph, gpad_gpi_output_version) + click.echo("final_gpi: {}".format(final_gpi)) click.echo("Creating ttl files...") make_ttls(dataset, final_output_gaf_path, products, ontology_graph)