From d06e40658ab76b523eb0419a0340d139b26e8aab Mon Sep 17 00:00:00 2001
From: Harshad Hegde <hegdehb@gmail.com>
Date: Mon, 25 Mar 2024 14:52:47 -0500
Subject: [PATCH 1/2] Updating `jsonlines` dependecy version.

---
 poetry.lock    | 11 ++++++-----
 pyproject.toml |  2 +-
 2 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index dbff4bb2..fe56e7b5 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -792,13 +792,13 @@ hbreader = "*"
 
 [[package]]
 name = "jsonlines"
-version = "3.1.0"
+version = "4.0.0"
 description = "Library with helpers for the jsonlines file format"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "jsonlines-3.1.0-py3-none-any.whl", hash = "sha256:632f5e38f93dfcb1ac8c4e09780b92af3a55f38f26e7c47ae85109d420b6ad39"},
-    {file = "jsonlines-3.1.0.tar.gz", hash = "sha256:2579cb488d96f815b0eb81629e3e6b0332da0962a18fa3532958f7ba14a5c37f"},
+    {file = "jsonlines-4.0.0-py3-none-any.whl", hash = "sha256:185b334ff2ca5a91362993f42e83588a360cf95ce4b71a73548502bda52a7c55"},
+    {file = "jsonlines-4.0.0.tar.gz", hash = "sha256:0c6d2c09117550c089995247f605ae4cf77dd1533041d366351f6f298822ea74"},
 ]
 
 [package.dependencies]
@@ -1693,6 +1693,7 @@ description = "A pure Python implementation of the trie data structure."
 optional = false
 python-versions = "*"
 files = [
+    {file = "PyTrie-0.4.0-py3-none-any.whl", hash = "sha256:f687c224ee8c66cda8e8628a903011b692635ffbb08d4b39c5f92b18eb78c950"},
     {file = "PyTrie-0.4.0.tar.gz", hash = "sha256:8f4488f402d3465993fb6b6efa09866849ed8cda7903b50647b7d0342b805379"},
 ]
 
@@ -2804,4 +2805,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9"
-content-hash = "10bf308f787d51b0223926ee2860a5abb59db567465cc973aefdec1ff5359eb3"
+content-hash = "8a2b7d320e83750238961d5bbd76e685061702a18cb04eee65b48e4170221f6a"
diff --git a/pyproject.toml b/pyproject.toml
index b6468379..d474b031 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -42,7 +42,7 @@ validators = "^0.20.0"
 cachetools = "^5.0.0"
 ordered-set = "^4.0.2"
 docker = "^6.0.0"
-jsonlines = "^3.1.0"
+jsonlines = "^4.0.0"
 jsonstreams = "^0.6.0"
 ijson = "^3.1.3"
 deprecation = "^2.1.0"

From 1c4b66f5ecd5004fc7b865971b4f025590bee9bd Mon Sep 17 00:00:00 2001
From: caufieldjh <j.harry.caufield@gmail.com>
Date: Tue, 26 Mar 2024 10:26:38 -0400
Subject: [PATCH 2/2] Ordering dep list

---
 pyproject.toml | 44 ++++++++++++++++++++++----------------------
 1 file changed, 22 insertions(+), 22 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index d474b031..e852993c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -19,37 +19,37 @@ packages = [
 
 [tool.poetry.dependencies]
 python = "^3.9"
-linkml = "^1.5.0"
-linkml-runtime = "^1.5.0"
+Click = "*"
+SPARQLWrapper = ">=1.8.2"
 Sphinx = "*"
-python-dateutil = "^2.8.1"
-prefixcommons = "^0.1.4"
+bmt = "^1.1.0"
+cachetools = "^5.0.0"
+deprecation = "^2.1.0"
+docker = "^6.0.0"
 docutils = "^0.18.1"
+ijson = "^3.1.3"
+inflection = "^0.5.1"
+jsonlines = "^4.0.0"
+jsonstreams = "^0.6.0"
+linkml = "^1.5.0"
+linkml-runtime = "^1.5.0"
+mypy = "*"
+neo4j = "^4.4.10"
 networkx = "*"
-SPARQLWrapper = ">=1.8.2"
+ordered-set = "^4.0.2"
 pandas = ">1.0.3"
+prefixcommons = "^0.1.4"
+prologterms = "^0.0.6"
 pytest = "*"
-mypy = "*"
-rdflib = ">=6.0.0"
-Click = "*"
-neo4j = "^4.4.10"
+python-dateutil = "^2.8.1"
 pyyaml = "*"
-prologterms = "^0.0.6"
+rdflib = ">=6.0.0"
+recommonmark = "*"
 shexjsg = "*"
-terminaltables = "^3.1.0"
 stringcase = "^1.2.0"
-validators = "^0.20.0"
-cachetools = "^5.0.0"
-ordered-set = "^4.0.2"
-docker = "^6.0.0"
-jsonlines = "^4.0.0"
-jsonstreams = "^0.6.0"
-ijson = "^3.1.3"
-deprecation = "^2.1.0"
-recommonmark = "*"
+terminaltables = "^3.1.0"
 tox = "^4.13.0"
-bmt = "^1.1.0"
-inflection = "^0.5.1"
+validators = "^0.20.0"
 
 [tool.poetry.dev-dependencies]
 sphinx-rtd-theme = "*"