diff --git a/poetry.lock b/poetry.lock
index 044aa5c0..3687f8b9 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -12,6 +12,18 @@ files = [
     {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"},
 ]
 
+[[package]]
+name = "annotated-types"
+version = "0.6.0"
+description = "Reusable constraint types to use with typing.Annotated"
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
+    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+]
+
 [[package]]
 name = "antlr4-python3-runtime"
 version = "4.9.3"
@@ -25,18 +37,23 @@ files = [
 
 [[package]]
 name = "arrow"
-version = "1.2.3"
+version = "1.3.0"
 description = "Better dates & times for Python"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "arrow-1.2.3-py3-none-any.whl", hash = "sha256:5a49ab92e3b7b71d96cd6bfcc4df14efefc9dfa96ea19045815914a6ab6b1fe2"},
-    {file = "arrow-1.2.3.tar.gz", hash = "sha256:3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1"},
+    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
+    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
 ]
 
 [package.dependencies]
 python-dateutil = ">=2.7.0"
+types-python-dateutil = ">=2.8.10"
+
+[package.extras]
+doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
+test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (>=3.0.0,<4.0.0)"]
 
 [[package]]
 name = "attrs"
@@ -59,26 +76,29 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 
 [[package]]
 name = "babel"
-version = "2.12.1"
+version = "2.13.0"
 description = "Internationalization utilities"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "Babel-2.12.1-py3-none-any.whl", hash = "sha256:b4246fb7677d3b98f501a39d43396d3cafdc8eadb045f4a31be01863f655c610"},
-    {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"},
+    {file = "Babel-2.13.0-py3-none-any.whl", hash = "sha256:fbfcae1575ff78e26c7449136f1abbefc3c13ce542eeb13d43d50d8b047216ec"},
+    {file = "Babel-2.13.0.tar.gz", hash = "sha256:04c3e2d28d2b7681644508f836be388ae49e0cfe91465095340395b60d00f210"},
 ]
 
+[package.extras]
+dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
+
 [[package]]
 name = "bmt"
-version = "1.1.0"
+version = "1.1.2"
 description = "Biolink Model Toolkit: A Python API for working with the Biolink Model"
 category = "main"
 optional = false
 python-versions = ">=3.9,<4.0"
 files = [
-    {file = "bmt-1.1.0-py3-none-any.whl", hash = "sha256:a7cd8fb656c81a7492483e8e570a5e575e43e9f00334faefa19f0f886d25add2"},
-    {file = "bmt-1.1.0.tar.gz", hash = "sha256:2e1afaba29625d0894df8d07a7f81c12bd5a1fd828b85bf94ac21cdac985c547"},
+    {file = "bmt-1.1.2-py3-none-any.whl", hash = "sha256:16c2a1b5dafe585d93540189e97b0687a1c41ad936856033818ab174749ef30d"},
+    {file = "bmt-1.1.2.tar.gz", hash = "sha256:51a80ab5035cf8ebe11ab130cff6171e2d745c6a6a4752de633be76b5f12aad6"},
 ]
 
 [package.dependencies]
@@ -100,14 +120,14 @@ files = [
 
 [[package]]
 name = "certifi"
-version = "2023.5.7"
+version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2023.5.7-py3-none-any.whl", hash = "sha256:c6c2e98f5c7869efca1f8916fed228dd91539f9f1b444c314c06eef02980c716"},
-    {file = "certifi-2023.5.7.tar.gz", hash = "sha256:0f0d56dc5a6ad56fd4ba36484d6cc34451e1c6548c61daad8c320169f91eddc7"},
+    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
+    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
 ]
 
 [[package]]
@@ -126,111 +146,126 @@ rdflib = ">=0.4.2"
 
 [[package]]
 name = "chardet"
-version = "5.1.0"
+version = "5.2.0"
 description = "Universal encoding detector for Python 3"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "chardet-5.1.0-py3-none-any.whl", hash = "sha256:362777fb014af596ad31334fde1e8c327dfdb076e1960d1694662d46a6917ab9"},
-    {file = "chardet-5.1.0.tar.gz", hash = "sha256:0d62712b956bc154f85fb0a266e2a3c5913c2967e00348701b32411d6def31e5"},
+    {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
+    {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
 ]
 
 [[package]]
 name = "charset-normalizer"
-version = "3.2.0"
+version = "3.3.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 [[package]]
 name = "click"
-version = "8.1.5"
+version = "8.1.7"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -265,24 +300,23 @@ test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
 
 [[package]]
 name = "curies"
-version = "0.5.6"
+version = "0.6.6"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
-pydantic = "<2.0"
+pydantic = "*"
 pytrie = "*"
 requests = "*"
 
 [package.extras]
-bioregistry = ["bioregistry (>=0.5.136)"]
-docs = ["sphinx (<7.0)", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
+docs = ["sphinx", "sphinx-automodapi", "sphinx-rtd-theme"]
 fastapi = ["defusedxml", "fastapi", "httpx", "python-multipart", "uvicorn"]
 flask = ["defusedxml", "flask"]
 pandas = ["pandas"]
@@ -336,14 +370,14 @@ packaging = "*"
 
 [[package]]
 name = "distlib"
-version = "0.3.6"
+version = "0.3.7"
 description = "Distribution utilities"
 category = "main"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [[package]]
@@ -394,14 +428,14 @@ files = [
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.2"
+version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.extras]
@@ -409,19 +443,20 @@ test = ["pytest (>=6)"]
 
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+version = "3.12.4"
 description = "A platform independent file lock."
 category = "main"
 optional = false
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+typing = ["typing-extensions (>=4.7.1)"]
 
 [[package]]
 name = "fqdn"
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 [[package]]
@@ -817,21 +852,18 @@ jsonpointer = ">=1.9"
 
 [[package]]
 name = "jsonpath-ng"
-version = "1.5.3"
+version = "1.6.0"
 description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
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 python-versions = "*"
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 [package.dependencies]
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 ply = "*"
-six = "*"
 
 [[package]]
 name = "jsonpointer"
@@ -847,14 +879,14 @@ files = [
 
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 name = "jsonschema"
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+version = "4.19.1"
 description = "An implementation of JSON Schema validation for Python"
 category = "main"
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 python-versions = ">=3.8"
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 [[package]]
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-version = "2023.6.1"
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 optional = false
 python-versions = ">=3.8"
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+version = "1.6.1"
 description = "Linked Open Data Modeling Language"
 category = "main"
 optional = false
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 openpyxl = "*"
 parse = "*"
 prefixcommons = ">=0.1.7"
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 [[package]]
 name = "linkml-runtime"
-version = "1.5.4"
+version = "1.6.0"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 category = "main"
 optional = false
 python-versions = ">=3.7.6,<4.0.0"
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 prefixmaps = ">=0.1.4"
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 rdflib = ">=6.0.0"
 requests = "*"
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+    {file = "ruamel.yaml.clib-0.2.8.tar.gz", hash = "sha256:beb2e0404003de9a4cab9753a8805a8fe9320ee6673136ed7f04255fe60bb512"},
 ]
 
 [[package]]
@@ -2104,26 +2324,26 @@ pandas = ["pandas (>=1.3.5)"]
 
 [[package]]
 name = "sphinx"
-version = "6.2.1"
+version = "7.2.6"
 description = "Python documentation generator"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "Sphinx-6.2.1.tar.gz", hash = "sha256:6d56a34697bb749ffa0152feafc4b19836c755d90a7c59b72bc7dfd371b9cc6b"},
-    {file = "sphinx-6.2.1-py3-none-any.whl", hash = "sha256:97787ff1fa3256a3eef9eda523a63dbf299f7b47e053cfcf684a1c2a8380c912"},
+    {file = "sphinx-7.2.6-py3-none-any.whl", hash = "sha256:1e09160a40b956dc623c910118fa636da93bd3ca0b9876a7b3df90f07d691560"},
+    {file = "sphinx-7.2.6.tar.gz", hash = "sha256:9a5160e1ea90688d5963ba09a2dcd8bdd526620edbb65c328728f1b2228d5ab5"},
 ]
 
 [package.dependencies]
 alabaster = ">=0.7,<0.8"
 babel = ">=2.9"
 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
-docutils = ">=0.18.1,<0.20"
+docutils = ">=0.18.1,<0.21"
 imagesize = ">=1.3"
 importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""}
 Jinja2 = ">=3.0"
 packaging = ">=21.0"
-Pygments = ">=2.13"
+Pygments = ">=2.14"
 requests = ">=2.25.0"
 snowballstemmer = ">=2.0"
 sphinxcontrib-applehelp = "*"
@@ -2131,23 +2351,23 @@ sphinxcontrib-devhelp = "*"
 sphinxcontrib-htmlhelp = ">=2.0.0"
 sphinxcontrib-jsmath = "*"
 sphinxcontrib-qthelp = "*"
-sphinxcontrib-serializinghtml = ">=1.1.5"
+sphinxcontrib-serializinghtml = ">=1.1.9"
 
 [package.extras]
 docs = ["sphinxcontrib-websupport"]
 lint = ["docutils-stubs", "flake8 (>=3.5.0)", "flake8-simplify", "isort", "mypy (>=0.990)", "ruff", "sphinx-lint", "types-requests"]
-test = ["cython", "filelock", "html5lib", "pytest (>=4.6)"]
+test = ["cython (>=3.0)", "filelock", "html5lib", "pytest (>=4.6)", "setuptools (>=67.0)"]
 
 [[package]]
 name = "sphinx-click"
-version = "4.4.0"
+version = "5.0.1"
 description = "Sphinx extension that automatically documents click applications"
 category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "sphinx-click-4.4.0.tar.gz", hash = "sha256:cc67692bd28f482c7f01531c61b64e9d2f069bfcf3d24cbbb51d4a84a749fa48"},
-    {file = "sphinx_click-4.4.0-py3-none-any.whl", hash = "sha256:2821c10a68fc9ee6ce7c92fad26540d8d8c8f45e6d7258f0e4fb7529ae8fab49"},
+    {file = "sphinx-click-5.0.1.tar.gz", hash = "sha256:fcc7df15e56e3ff17ebf446cdd316c2eb79580b37c49579fba11e5468802ef25"},
+    {file = "sphinx_click-5.0.1-py3-none-any.whl", hash = "sha256:31836ca22f746d3c26cbfdfe0c58edf0bca5783731a0b2e25bb6d59800bb75a1"},
 ]
 
 [package.dependencies]
@@ -2157,19 +2377,19 @@ sphinx = ">=2.0"
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "1.2.2"
+version = "1.3.0"
 description = "Read the Docs theme for Sphinx"
 category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
-    {file = "sphinx_rtd_theme-1.2.2-py2.py3-none-any.whl", hash = "sha256:6a7e7d8af34eb8fc57d52a09c6b6b9c46ff44aea5951bc831eeb9245378f3689"},
-    {file = "sphinx_rtd_theme-1.2.2.tar.gz", hash = "sha256:01c5c5a72e2d025bd23d1f06c59a4831b06e6ce6c01fdd5ebfe9986c0a880fc7"},
+    {file = "sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl", hash = "sha256:46ddef89cc2416a81ecfbeaceab1881948c014b1b6e4450b815311a89fb977b0"},
+    {file = "sphinx_rtd_theme-1.3.0.tar.gz", hash = "sha256:590b030c7abb9cf038ec053b95e5380b5c70d61591eb0b552063fbe7c41f0931"},
 ]
 
 [package.dependencies]
 docutils = "<0.19"
-sphinx = ">=1.6,<7"
+sphinx = ">=1.6,<8"
 sphinxcontrib-jquery = ">=4,<5"
 
 [package.extras]
@@ -2177,48 +2397,57 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.4"
+version = "1.0.7"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib-applehelp-1.0.4.tar.gz", hash = "sha256:828f867945bbe39817c210a1abfd1bc4895c8b73fcaade56d45357a348a07d7e"},
-    {file = "sphinxcontrib_applehelp-1.0.4-py3-none-any.whl", hash = "sha256:29d341f67fb0f6f586b23ad80e072c8e6ad0b48417db2bde114a4c9746feb228"},
+    {file = "sphinxcontrib_applehelp-1.0.7-py3-none-any.whl", hash = "sha256:094c4d56209d1734e7d252f6e0b3ccc090bd52ee56807a5d9315b19c122ab15d"},
+    {file = "sphinxcontrib_applehelp-1.0.7.tar.gz", hash = "sha256:39fdc8d762d33b01a7d8f026a3b7d71563ea3b72787d5f00ad8465bd9d6dfbfa"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
-version = "1.0.2"
-description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
+version = "1.0.5"
+description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib-devhelp-1.0.2.tar.gz", hash = "sha256:ff7f1afa7b9642e7060379360a67e9c41e8f3121f2ce9164266f61b9f4b338e4"},
-    {file = "sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl", hash = "sha256:8165223f9a335cc1af7ffe1ed31d2871f325254c0423bc0c4c7cd1c1e4734a2e"},
+    {file = "sphinxcontrib_devhelp-1.0.5-py3-none-any.whl", hash = "sha256:fe8009aed765188f08fcaadbb3ea0d90ce8ae2d76710b7e29ea7d047177dae2f"},
+    {file = "sphinxcontrib_devhelp-1.0.5.tar.gz", hash = "sha256:63b41e0d38207ca40ebbeabcf4d8e51f76c03e78cd61abe118cf4435c73d4212"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.1"
+version = "2.0.4"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib-htmlhelp-2.0.1.tar.gz", hash = "sha256:0cbdd302815330058422b98a113195c9249825d681e18f11e8b1f78a2f11efff"},
-    {file = "sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl", hash = "sha256:c38cb46dccf316c79de6e5515e1770414b797162b23cd3d06e67020e1d2a6903"},
+    {file = "sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl", hash = "sha256:8001661c077a73c29beaf4a79968d0726103c5605e27db92b9ebed8bab1359e9"},
+    {file = "sphinxcontrib_htmlhelp-2.0.4.tar.gz", hash = "sha256:6c26a118a05b76000738429b724a0568dbde5b72391a688577da08f11891092a"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["html5lib", "pytest"]
@@ -2255,85 +2484,99 @@ test = ["flake8", "mypy", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
-version = "1.0.3"
-description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
+version = "1.0.6"
+description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib-qthelp-1.0.3.tar.gz", hash = "sha256:4c33767ee058b70dba89a6fc5c1892c0d57a54be67ddd3e7875a18d14cba5a72"},
-    {file = "sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl", hash = "sha256:bd9fc24bcb748a8d51fd4ecaade681350aa63009a347a8c14e637895444dfab6"},
+    {file = "sphinxcontrib_qthelp-1.0.6-py3-none-any.whl", hash = "sha256:bf76886ee7470b934e363da7a954ea2825650013d367728588732c7350f49ea4"},
+    {file = "sphinxcontrib_qthelp-1.0.6.tar.gz", hash = "sha256:62b9d1a186ab7f5ee3356d906f648cacb7a6bdb94d201ee7adf26db55092982d"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
-version = "1.1.5"
-description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
+version = "1.1.9"
+description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
 files = [
-    {file = "sphinxcontrib-serializinghtml-1.1.5.tar.gz", hash = "sha256:aa5f6de5dfdf809ef505c4895e51ef5c9eac17d0f287933eb49ec495280b6952"},
-    {file = "sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl", hash = "sha256:352a9a00ae864471d3a7ead8d7d79f5fc0b57e8b3f95e9867eb9eb28999b92fd"},
+    {file = "sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl", hash = "sha256:9b36e503703ff04f20e9675771df105e58aa029cfcbc23b8ed716019b7416ae1"},
+    {file = "sphinxcontrib_serializinghtml-1.1.9.tar.gz", hash = "sha256:0c64ff898339e1fac29abd2bf5f11078f3ec413cfe9c046d3120d7ca65530b54"},
 ]
 
+[package.dependencies]
+Sphinx = ">=5"
+
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
 test = ["pytest"]
 
 [[package]]
 name = "sqlalchemy"
-version = "2.0.18"
+version = "2.0.22"
 description = "Database Abstraction Library"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "SQLAlchemy-2.0.18-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:7ddd6d35c598af872f9a0a5bce7f7c4a1841684a72dab3302e3df7f17d1b5249"},
-    {file = "SQLAlchemy-2.0.18-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:00aa050faf24ce5f2af643e2b86822fa1d7149649995f11bc1e769bbfbf9010b"},
-    {file = "SQLAlchemy-2.0.18-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b52c6741073de5a744d27329f9803938dcad5c9fee7e61690c705f72973f4175"},
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 ]
 
 [package.dependencies]
@@ -2341,7 +2584,7 @@ greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or
 typing-extensions = ">=4.2.0"
 
 [package.extras]
-aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
+aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
 aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
 asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
@@ -2425,16 +2668,28 @@ virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2,
 docs = ["pygments-github-lexers (>=0.0.5)", "sphinx (>=2.0.0)", "sphinxcontrib-autoprogram (>=0.1.5)", "towncrier (>=18.5.0)"]
 testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pathlib2 (>=2.3.3)", "psutil (>=5.6.1)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)"]
 
+[[package]]
+name = "types-python-dateutil"
+version = "2.8.19.14"
+description = "Typing stubs for python-dateutil"
+category = "main"
+optional = false
+python-versions = "*"
+files = [
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+]
+
 [[package]]
 name = "typing-extensions"
-version = "4.7.1"
-description = "Backported and Experimental Type Hints for Python 3.7+"
+version = "4.8.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
-    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
+    {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"},
+    {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"},
 ]
 
 [[package]]
@@ -2466,14 +2721,14 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake
 
 [[package]]
 name = "urllib3"
-version = "2.0.3"
+version = "2.0.7"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "urllib3-2.0.3-py3-none-any.whl", hash = "sha256:48e7fafa40319d358848e1bc6809b208340fafe2096f1725d05d67443d0483d1"},
-    {file = "urllib3-2.0.3.tar.gz", hash = "sha256:bee28b5e56addb8226c96f7f13ac28cb4c301dd5ea8a6ca179c0b9835e032825"},
+    {file = "urllib3-2.0.7-py3-none-any.whl", hash = "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"},
+    {file = "urllib3-2.0.7.tar.gz", hash = "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84"},
 ]
 
 [package.extras]
@@ -2501,24 +2756,24 @@ test = ["flake8 (>=2.4.0)", "isort (>=4.2.2)", "pytest (>=2.2.3)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.23.1"
+version = "20.24.5"
 description = "Virtual Python Environment builder"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.23.1-py3-none-any.whl", hash = "sha256:34da10f14fea9be20e0fd7f04aba9732f84e593dac291b757ce42e3368a39419"},
-    {file = "virtualenv-20.23.1.tar.gz", hash = "sha256:8ff19a38c1021c742148edc4f81cb43d7f8c6816d2ede2ab72af5b84c749ade1"},
+    {file = "virtualenv-20.24.5-py3-none-any.whl", hash = "sha256:b80039f280f4919c77b30f1c23294ae357c4c8701042086e3fc005963e4e537b"},
+    {file = "virtualenv-20.24.5.tar.gz", hash = "sha256:e8361967f6da6fbdf1426483bfe9fca8287c242ac0bc30429905721cefbff752"},
 ]
 
 [package.dependencies]
-distlib = ">=0.3.6,<1"
-filelock = ">=3.12,<4"
-platformdirs = ">=3.5.1,<4"
+distlib = ">=0.3.7,<1"
+filelock = ">=3.12.2,<4"
+platformdirs = ">=3.9.1,<4"
 
 [package.extras]
-docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
-test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezer (>=0.4.6)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.8)", "time-machine (>=2.9)"]
+docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
 
 [[package]]
 name = "watchdog"
@@ -2578,18 +2833,18 @@ tests = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "websocket-client"
-version = "1.6.1"
+version = "1.6.4"
 description = "WebSocket client for Python with low level API options"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "websocket-client-1.6.1.tar.gz", hash = "sha256:c951af98631d24f8df89ab1019fc365f2227c0892f12fd150e935607c79dd0dd"},
-    {file = "websocket_client-1.6.1-py3-none-any.whl", hash = "sha256:f1f9f2ad5291f0225a49efad77abf9e700b6fef553900623060dad6e26503b9d"},
+    {file = "websocket-client-1.6.4.tar.gz", hash = "sha256:b3324019b3c28572086c4a319f91d1dcd44e6e11cd340232978c684a7650d0df"},
+    {file = "websocket_client-1.6.4-py3-none-any.whl", hash = "sha256:084072e0a7f5f347ef2ac3d8698a5e0b4ffbfcab607628cadabc650fc9a83a24"},
 ]
 
 [package.extras]
-docs = ["Sphinx (>=3.4)", "sphinx-rtd-theme (>=0.5)"]
+docs = ["Sphinx (>=6.0)", "sphinx-rtd-theme (>=1.1.0)"]
 optional = ["python-socks", "wsaccel"]
 test = ["websockets"]
 
@@ -2680,18 +2935,18 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.16.2"
+version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
-    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
+    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
+    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
diff --git a/specification/kgx-format.md b/specification/kgx-format.md
index e78b9243..ad846237 100644
--- a/specification/kgx-format.md
+++ b/specification/kgx-format.md
@@ -19,6 +19,7 @@ Version: 0.0.2<br>
         - [Optional Edge Record Elements](#optional-edge-record-elements)
 - [KGX format as JSON](#kgx-format-as-json)
 - [KGX format as TSV](#kgx-format-as-tsv)
+- [KGX format as JSON Lines](#kgx-format-as-json-lines)
 - [KGX format as RDF Turtle](#kgx-format-as-rdf-turtle)
         
 ## Introduction
@@ -123,9 +124,10 @@ An edge can also have other properties that are not from Biolink Model. While it
 
 
 
-## KGX format as a JSON
+## KGX format as JSON
 
 The structure of the KGX JSON format is as follows:
+
 ```json
 {
     "nodes": [],
@@ -195,14 +197,14 @@ Few noted caveats of the TSV serialization:
 - The order of the columns can be specified for core properties but not for other Biolink or non-Biolink properties. This leads to a mismatch in expectation on the ordering of columns in the TSV for nodes and/or edges.
 - Fields that accept lists of value - e.g. the above fields for `category` (which in the Biolink Model may contain all the ancestors category classes of the most specific category, as noted in the above example with `biolink:Gene` and `biolink:Disease`) and `publications` - have values typically a list of values delimited by a Unix pipe ('|') character, unless otherwise programmatically overridden, using an available `list_delimiter` parameter, during TSV _source_ or _sink_ data parsing by the KGX software tool)
 
-## KGX format as JSONLINES
+## KGX format as JSON Lines
 
-The KGX Jsonlines format is similar to the TSV format in that there are two files - one for nodes and another for edges.
+The KGX JSON Lines format is similar to the TSV format in that there are two files - one for nodes and another for edges.
 
 - `nodes.jsonl`: each row corresponds to a Node record.
 - `edges.jsonl`: each row corresponds to an Edge record.
 
-A sample KGX Jsonlines that represents a graph with 2 nodes and 1 edge:
+A sample KGX JSON Lines that represents a graph with 2 nodes and 1 edge:
 
 nodes.jsonl
 ```jsonlines