From a55b51b523c915649e345f12a3d830b89e459e9d Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Tue, 23 May 2023 18:25:46 -0700 Subject: [PATCH] update bmt dependency --- poetry.lock | 3566 +++++++++------------------ pyproject.toml | 12 +- tests/resources/test-transform.yaml | 13 +- 3 files changed, 1218 insertions(+), 2373 deletions(-) diff --git a/poetry.lock b/poetry.lock index 57a580d0..5fe3d960 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,14 +1,4 @@ -[[package]] -name = "airium" -version = "0.2.5" -description = "Easy and quick html builder with natural syntax correspondence (python->html). No templates needed. Serves pure pythonic library with no dependencies." -category = "main" -optional = false -python-versions = "*" - -[package.extras] -dev = ["pdbpp (>=0.10,<1.0)", "pytest (>=6.2,<7.0)", "pytest-cov (>=3.0,<4.0)", "pytest-mock (>=3.6,<4.0)"] -parse = ["beautifulsoup4 (>=4.10,<5.0)", "requests (>=2.12,<3)"] +# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. [[package]] name = "alabaster" @@ -17,6 +7,10 @@ description = "A configurable sidebar-enabled Sphinx theme" category = "main" optional = false python-versions = ">=3.6" +files = [ + {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, + {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, +] [[package]] name = "antlr4-python3-runtime" @@ -25,14 +19,9 @@ description = "ANTLR 4.9.3 runtime for Python 3.7" category = "main" optional = false python-versions = "*" - -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "main" -optional = false -python-versions = "*" +files = [ + {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"}, +] [[package]] name = "arrow" @@ -41,6 +30,10 @@ description = "Better dates & times for Python" category = "main" optional = false python-versions = ">=3.6" +files = [ + {file = "arrow-1.2.3-py3-none-any.whl", hash = "sha256:5a49ab92e3b7b71d96cd6bfcc4df14efefc9dfa96ea19045815914a6ab6b1fe2"}, + {file = "arrow-1.2.3.tar.gz", hash = "sha256:3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1"}, +] [package.dependencies] python-dateutil = ">=2.7.0" @@ -52,6 +45,10 @@ description = "Classes Without Boilerplate" category = "main" optional = false python-versions = ">=3.6" +files = [ + {file = "attrs-22.2.0-py3-none-any.whl", hash = "sha256:29e95c7f6778868dbd49170f98f8818f78f3dc5e0e37c0b1f474e3561b240836"}, + {file = "attrs-22.2.0.tar.gz", hash = "sha256:c9227bfc2f01993c03f68db37d1d15c9690188323c067c641f1a35ca58185f99"}, +] [package.extras] cov = ["attrs[tests]", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"] @@ -67,70 +64,26 @@ description = "Internationalization utilities" category = "main" optional = false python-versions = ">=3.7" - 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"sha256:c225b674c83fa923be93d235330ce0300373d02885cef23238813b0d5668304a"}, ] -websocket-client = [ + +[package.extras] +docs = ["furo", "sphinx", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-notfound-page", "sphinxext-opengraph"] +tests = ["pytest", "pytest-cov"] + +[[package]] +name = "websocket-client" +version = "1.5.1" +description = "WebSocket client for Python with low level API options" +category = "main" +optional = false +python-versions = ">=3.7" +files = [ {file = "websocket-client-1.5.1.tar.gz", hash = "sha256:3f09e6d8230892547132177f575a4e3e73cfdf06526e20cc02aa1c3b47184d40"}, {file = "websocket_client-1.5.1-py3-none-any.whl", hash = "sha256:cdf5877568b7e83aa7cf2244ab56a3213de587bbe0ce9d8b9600fc77b455d89e"}, ] -wrapt = [ + +[package.extras] +docs = ["Sphinx (>=3.4)", "sphinx-rtd-theme (>=0.5)"] +optional = ["python-socks", "wsaccel"] +test = ["websockets"] + +[[package]] +name = "wrapt" +version = "1.15.0" +description = "Module for decorators, wrappers and monkey patching." +category = "main" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +files = [ {file = "wrapt-1.15.0-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:ca1cccf838cd28d5a0883b342474c630ac48cac5df0ee6eacc9c7290f76b11c1"}, {file = "wrapt-1.15.0-cp27-cp27m-manylinux1_i686.whl", hash = "sha256:e826aadda3cae59295b95343db8f3d965fb31059da7de01ee8d1c40a60398b29"}, {file = "wrapt-1.15.0-cp27-cp27m-manylinux1_x86_64.whl", hash = "sha256:5fc8e02f5984a55d2c653f5fea93531e9836abbd84342c1d1e17abc4a15084c2"}, @@ -3849,7 +2664,24 @@ wrapt = [ {file = "wrapt-1.15.0-py3-none-any.whl", hash = "sha256:64b1df0f83706b4ef4cfb4fb0e4c2669100fd7ecacfb59e091fad300d4e04640"}, {file = "wrapt-1.15.0.tar.gz", hash = "sha256:d06730c6aed78cee4126234cf2d071e01b44b915e725a6cb439a879ec9754a3a"}, ] -zipp = [ + +[[package]] +name = "zipp" +version = "3.15.0" +description = "Backport of pathlib-compatible object wrapper for zip files" +category = "main" +optional = false +python-versions = ">=3.7" +files = [ {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"}, {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"}, ] + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.9" +content-hash = "8049bb9eb640bf9d043dc2cf402db651f0a221d1bb08a7b57f35ac5a2c0d87d4" diff --git a/pyproject.toml b/pyproject.toml index fa3cc6bc..74b23781 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,8 +19,8 @@ packages = [ [tool.poetry.dependencies] python = "^3.9" -linkml = "^1.4" -linkml-runtime = "^1.4" +linkml = "^1.5.0" +linkml-runtime = "^1.5.0" Sphinx = "*" python-dateutil = "^2.8.1" prefixcommons = "^0.1.4" @@ -40,8 +40,6 @@ terminaltables = "^3.1.0" stringcase = "^1.2.0" validators = "^0.20.0" cachetools = "^5.0.0" -sphinx-rtd-theme = "*" -sphinx-click = "*" ordered-set = "^4.0.2" docker = "^6.0.0" jsonlines = "^3.1.0" @@ -50,10 +48,14 @@ ijson = "^3.1.3" deprecation = "^2.1.0" recommonmark = "*" tox = "^3.0" -bmt = "^1.0.13" +bmt = "^1.0.15" inflection = "^0.5.1" closurizer = "^0.1.7" +[tool.poetry.dev-dependencies] +sphinx-rtd-theme = "*" +sphinx-click = "*" + [tool.poetry-dynamic-versioning] enable = true vcs = "git" diff --git a/tests/resources/test-transform.yaml b/tests/resources/test-transform.yaml index db9fd031..68e67ee7 100644 --- a/tests/resources/test-transform.yaml +++ b/tests/resources/test-transform.yaml @@ -13,7 +13,18 @@ transform: output: format: json filename: - - graph.json + - grapher + other_graph: + name: "Test Graph" + input: + format: tsv + filename: + - graph_nodes.tsv + - graph_edges.tsv + output: + format: tsv + filename: + - grapher valid_graph: name: "Valid JSON Graph" input: