From 3c5f924e6081028d288b286fb0db4c8db4cef006 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Mon, 7 Oct 2024 22:28:42 +0000 Subject: [PATCH] Regenerate artifacts from infores_catalog.yaml --- project/information_resource_registry.py | 2 +- ...formation_resource_registry.context.jsonld | 2 +- .../information_resource_registry.jsonld | 4 +- project/owl/information_resource.owl.ttl | 62 +++++++++---------- .../information_resource_registry.shacl.ttl | 52 ++++++++-------- .../information_resource_registry.py | 2 +- 6 files changed, 62 insertions(+), 62 deletions(-) diff --git a/project/information_resource_registry.py b/project/information_resource_registry.py index ff68d97..8705fc9 100644 --- a/project/information_resource_registry.py +++ b/project/information_resource_registry.py @@ -1,5 +1,5 @@ # Auto generated from information_resource_registry.yaml by pythongen.py version: 0.0.1 -# Generation date: 2024-10-07T22:21:43 +# Generation date: 2024-10-07T22:28:29 # Schema: Information-Resource-Registry-Schema # # id: https://w3id.org/biolink/information_resource_registry.yaml diff --git a/project/jsonld/information_resource_registry.context.jsonld b/project/jsonld/information_resource_registry.context.jsonld index d87286e..b178989 100644 --- a/project/jsonld/information_resource_registry.context.jsonld +++ b/project/jsonld/information_resource_registry.context.jsonld @@ -1,7 +1,7 @@ { "comments": { "description": "Auto generated by LinkML jsonld context generator", - "generation_date": "2024-10-07T22:21:43", + "generation_date": "2024-10-07T22:28:29", "source": "information_resource_registry.yaml" }, "@context": { diff --git a/project/jsonld/information_resource_registry.jsonld b/project/jsonld/information_resource_registry.jsonld index 48b75a9..39d1e57 100644 --- a/project/jsonld/information_resource_registry.jsonld +++ b/project/jsonld/information_resource_registry.jsonld @@ -647,9 +647,9 @@ ], "metamodel_version": "1.7.0", "source_file": "information_resource_registry.yaml", - "source_file_date": "2024-10-07T22:20:41", + "source_file_date": "2024-10-07T22:27:33", "source_file_size": 11239, - "generation_date": "2024-10-07T22:21:43", + "generation_date": "2024-10-07T22:28:29", "@type": "SchemaDefinition", "@context": [ "project/jsonld/information_resource_registry.context.jsonld", diff --git a/project/owl/information_resource.owl.ttl b/project/owl/information_resource.owl.ttl index 9370132..cfbd014 100644 --- a/project/owl/information_resource.owl.ttl +++ b/project/owl/information_resource.owl.ttl @@ -12,10 +12,10 @@ infores:InformationResourceContainer a owl:Class ; rdfs:label "InformationResourceContainer" ; rdfs:subClassOf [ a owl:Restriction ; - owl:minCardinality 0 ; + owl:allValuesFrom infores:InformationResource ; owl:onProperty infores:information_resources ], [ a owl:Restriction ; - owl:allValuesFrom infores:InformationResource ; + owl:minCardinality 0 ; owl:onProperty infores:information_resources ], linkml:ClassDefinition ; skos:definition "A collection of information resources" ; @@ -65,70 +65,70 @@ infores:InformationResource a owl:Class ; rdfs:label "InformationResource" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty infores:agent_type ], + owl:onProperty infores:name ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty infores:agent_type ], + owl:allValuesFrom infores:KnowledgeLevelEnum ; + owl:onProperty infores:knowledge_level ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty infores:xref ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty infores:description ], - [ a owl:Restriction ; - owl:allValuesFrom xsd:string ; owl:onProperty infores:synonym ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty infores:name ], + owl:onProperty infores:agent_type ], [ a owl:Restriction ; - owl:minCardinality 0 ; + owl:maxCardinality 1 ; owl:onProperty infores:knowledge_level ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty infores:status ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty infores:id ], [ a owl:Restriction ; - owl:allValuesFrom infores:KnowledgeLevelEnum ; - owl:onProperty infores:knowledge_level ], - [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty infores:knowledge_level ], + owl:allValuesFrom infores:InformationResourceStatusEnum ; + owl:onProperty infores:status ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty infores:description ], [ a owl:Restriction ; - owl:minCardinality 0 ; + owl:allValuesFrom xsd:string ; owl:onProperty infores:synonym ], [ a owl:Restriction ; owl:minCardinality 0 ; - owl:onProperty infores:status ], + owl:onProperty infores:knowledge_level ], [ a owl:Restriction ; - owl:allValuesFrom infores:AgentTypeEnum ; - owl:onProperty infores:agent_type ], + owl:allValuesFrom xsd:string ; + owl:onProperty infores:xref ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty infores:id ], + owl:onProperty infores:name ], + [ a owl:Restriction ; + owl:maxCardinality 1 ; + owl:onProperty infores:agent_type ], + [ a owl:Restriction ; + owl:minCardinality 0 ; + owl:onProperty infores:xref ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty infores:name ], [ a owl:Restriction ; owl:maxCardinality 1 ; - owl:onProperty infores:name ], + owl:onProperty infores:id ], [ a owl:Restriction ; - owl:minCardinality 0 ; + owl:maxCardinality 1 ; owl:onProperty infores:description ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty infores:id ], [ a owl:Restriction ; - owl:maxCardinality 1 ; - owl:onProperty infores:status ], - [ a owl:Restriction ; - owl:allValuesFrom xsd:string ; - owl:onProperty infores:xref ], + owl:minCardinality 0 ; + owl:onProperty infores:description ], [ a owl:Restriction ; - owl:allValuesFrom infores:InformationResourceStatusEnum ; + owl:minCardinality 0 ; owl:onProperty infores:status ], + [ a owl:Restriction ; + owl:allValuesFrom infores:AgentTypeEnum ; + owl:onProperty infores:agent_type ], linkml:ClassDefinition ; skos:altLabel "knowledgebase" ; skos:definition "A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, streaming services, data downloads, etc.). A single Information Resource by this definition may span many different datasets or databases, and include many access endpoints and user interfaces. Information Resources include project-specific resources such as a Translator Knowledge Provider, and community knowledgebases like ChemBL, OMIM, or DGIdb." ; diff --git a/project/shacl/information_resource_registry.shacl.ttl b/project/shacl/information_resource_registry.shacl.ttl index 848e00b..7dd3121 100644 --- a/project/shacl/information_resource_registry.shacl.ttl +++ b/project/shacl/information_resource_registry.shacl.ttl @@ -20,16 +20,32 @@ infores:InformationResource a sh:NodeShape ; sh:description "A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, streaming services, data downloads, etc.). A single Information Resource by this definition may span many different datasets or databases, and include many access endpoints and user interfaces. Information Resources include project-specific resources such as a Translator Knowledge Provider, and community knowledgebases like ChemBL, OMIM, or DGIdb." ; sh:ignoredProperties ( rdf:type ) ; sh:property [ sh:datatype xsd:string ; + sh:description "Alternate human-readable names for a thing" ; + sh:nodeKind sh:Literal ; + sh:order 4 ; + sh:path infores:synonym ], + [ sh:description "The level of knowledge that supports an edge or node. This is a general categorization of the type of evidence that supports a statement, and is not intended to be a comprehensive description of the evidence. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the knowledge level would be \"curated\", and the evidence would be described in more detail in the evidence graph." ; + sh:in ( "knowledge_assertion" "statistical_association" "prediction" "observation" "not_provided" "logical_entailment" "mixed" "other" ) ; + sh:maxCount 1 ; + sh:order 6 ; + sh:path infores:knowledge_level ], + [ sh:datatype xsd:string ; + sh:description "A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references." ; + sh:nodeKind sh:Literal ; + sh:order 3 ; + sh:path infores:xref ], + [ sh:datatype xsd:string ; + sh:description "A human-readable name for an attribute or entity." ; + sh:maxCount 1 ; + sh:nodeKind sh:Literal ; + sh:order 1 ; + sh:path rdfs:label ], + [ sh:datatype xsd:string ; sh:description "A free-text description of an entity or attribute." ; sh:maxCount 1 ; sh:nodeKind sh:Literal ; sh:order 5 ; sh:path rdfs:comment ], - [ sh:description "the status of the infores identifier, the default is \"released\"" ; - sh:in ( "released" "deprecated" "draft" "modified" ) ; - sh:maxCount 1 ; - sh:order 0 ; - sh:path infores:status ], [ sh:datatype xsd:string ; sh:description "A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" ; sh:maxCount 1 ; @@ -37,31 +53,15 @@ infores:InformationResource a sh:NodeShape ; sh:nodeKind sh:Literal ; sh:order 2 ; sh:path infores:id ], - [ sh:datatype xsd:string ; - sh:description "A human-readable name for an attribute or entity." ; + [ sh:description "the status of the infores identifier, the default is \"released\"" ; + sh:in ( "released" "deprecated" "draft" "modified" ) ; sh:maxCount 1 ; - sh:nodeKind sh:Literal ; - sh:order 1 ; - sh:path rdfs:label ], - [ sh:datatype xsd:string ; - sh:description "A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings. This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references." ; - sh:nodeKind sh:Literal ; - sh:order 3 ; - sh:path infores:xref ], + sh:order 0 ; + sh:path infores:status ], [ sh:description "The type of agent that supports an edge or node. This is a general categorization of the type of agent that supports a statement, and is not intended to be a comprehensive description of the agent. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the agent type would be \"publication\", and the evidence would be described in more detail in the evidence graph." ; sh:in ( "manual_agent" "not_provided" "automated_agent" "data_analysis_pipeline" "computational_model" "text_mining_agent" "image_processing_agent" "manual_validation_of_automated_agent" ) ; sh:maxCount 1 ; sh:order 7 ; - sh:path infores:agent_type ], - [ sh:datatype xsd:string ; - sh:description "Alternate human-readable names for a thing" ; - sh:nodeKind sh:Literal ; - sh:order 4 ; - sh:path infores:synonym ], - [ sh:description "The level of knowledge that supports an edge or node. This is a general categorization of the type of evidence that supports a statement, and is not intended to be a comprehensive description of the evidence. For example, a statement may be supported by a single publication, but that publication may contain multiple types of evidence, such as a computational prediction and a manual curation. In this case, the knowledge level would be \"curated\", and the evidence would be described in more detail in the evidence graph." ; - sh:in ( "knowledge_assertion" "statistical_association" "prediction" "observation" "not_provided" "logical_entailment" "mixed" "other" ) ; - sh:maxCount 1 ; - sh:order 6 ; - sh:path infores:knowledge_level ] ; + sh:path infores:agent_type ] ; sh:targetClass infores:InformationResource . diff --git a/src/information_resource_registry/datamodel/information_resource_registry.py b/src/information_resource_registry/datamodel/information_resource_registry.py index 486780e..b7ff90d 100644 --- a/src/information_resource_registry/datamodel/information_resource_registry.py +++ b/src/information_resource_registry/datamodel/information_resource_registry.py @@ -1,5 +1,5 @@ # Auto generated from information_resource_registry.yaml by pythongen.py version: 0.0.1 -# Generation date: 2024-10-07T22:21:47 +# Generation date: 2024-10-07T22:28:33 # Schema: Information-Resource-Registry-Schema # # id: https://w3id.org/biolink/information_resource_registry.yaml