1.6.1

Corrected NCBIGene prefix (from NCBIGENE)
Reverted ontology taxon parent to named thing

1.6.0 release

• Corrected the exact mappings for CTD positive and negative correlation predicates
• Refined the modeling of ontology class as a mixin
• Removed slot_uri for 'subclass of' predicate
• Moved CTD:therapeutic from 'exacerbates' to 'ameliorates'
• Fixed range for category slot in the 'association' class
• Cleaned up prefixes for INO and HANCESTRO
• Removed commas in class and predicate names

1.5.0 release

• Fixed mapping for CTD
• Added catalyst qualifier slot
• Updated guidelines with examples
• Extended the model to represent spatiotemporal exposures, outcomes, and cohorts
• Added 'pathological process' class
• Predicates that are symmetric are defined explicitly
• Added a new 'activity' class
• Fixed mixin hierarchy of transcript and RNA products
• Extended the model to represent entities from MODs
• Reorganized the chemical substance hierarchy
• Added a class to represent siRNA
• Improved the organization of 'pathological process'
• Added more prefixes for various classes
• Changed category slot required for 'named thing' and optional for 'association'

1.4.0 release

• Added an enhanced Publication model
• Replaced biolink-model.owl with biolink-model.owl.ttl
• Differentiated mappings for classes into related, broad, narrow, close, and exact mappings
• Differentiated mappings for slots into related, broad, narrow, close, and exact mappings
• Fixed typos in class and slot definitions
• Fixed inconsistent domain and range constraints
• Added classes to represent food
• Fixed parent for relation enables
• Deprecate edge_label in favor of predicate
• Added missing prefixes
• Added guidelines to the documentation
• Tidied the representation and use of mixins
• Differentiated the mixin hierarchy from the class hierarchy
• Rearranged properties like id, name, type, description to a generic grouping entity class

1.3.9 release

• Added genomic entities and common properties for these entities
• Added mappings to GPI 2.0 specification
• Fixed prefixes for mappings in the model
• Fixed definition of interacts_with relation to be symmetric
• Added missing predicates referenced in associations
• Added entities and properties for representing sequence locations
• Added mappings from Monarch Initiative
• Added an inverse property of subclass_of
• Fixed description for edge_label and relation slots
• Added more mappings for different entities and relations
• Added chi_squared_statistic and p_value association slots
• Expanded the scope of correlated_with relation
• Added clarification to RDF mappings
• Fixed provided_by property to be multivalued
• Added enables relation

1.3.0 release

• association_id property should be an association property
• Added or updated id_prefixes for many types
• add caused by property as inverse of causes
• Chemical structure --> chemical substance
• adding has-output
• OBAN to all upper case. Fix Issue #271
• Adding RHEA to prefixes that can be used for reactions, #269
• First pass at chem2chem associations and hyperedges to catalysts,
• fixes #269
• adding node properties for exposure events
• added new associations for exposures
• identifier type changed to anyURI and linked to metamodel ElementIdentifier
• iri type changed to support both URI or Curie
• changed subclass of to reference an iri instead of a defined ontology class, and made it multivalued
• association_id now defaults to bnode so it doesn't have to be supplied
• range of association slot is named thing (meaning that it has to be typed in the model)
• systematic synonym changed to multivalued
• changed subject and object of association to named thing instead of just a iri
• changed relation type to uriorcurie vs. straight uri
• moved association_id in the association class so the creation order is subject, relation, object instead of association_id, subject, relation, object

1.2.0 release

Merge pull request #234 from deepakunni3/prepare-for-pypi-release

Prepare for pypi release

1.1.1 release

v1.1.1

added generated docs for new elements

1.1.0 release

v1.1.0

docs

1.0.0 release

v1.0.0

regenerated derived artefacts