From 6492f92a6718271b1faae83a8daa9a78ffb4fa02 Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Mon, 4 Mar 2024 10:08:36 -0800 Subject: [PATCH 1/3] update changelog --- ChangeLog | 31 +++++++++++++++++++++++++++++++ class_prefixes.yaml | 2 +- 2 files changed, 32 insertions(+), 1 deletion(-) diff --git a/ChangeLog b/ChangeLog index 889248262..011edba2f 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,5 +1,36 @@ CHANGES ======= +4.1.5 +----- + + +4.1.4 +----- +- Update README.md by @baig in #1449 +- adding inverses for treats hierarchy not currently inversed by @sierra-moxon in #1460 +https://github.com/biolink/biolink-model/compare/v4.1.3...v4.1.4 + +4.1.3 +----- +- Remove explicit rdflib dependency by @kevinschaper in #1459 +https://github.com/biolink/biolink-model/compare/v4.1.2...v4.1.3 + +4.1.2 +----- +- Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in #1446 +- Add frequency quantifier mixin to disease to phenotypic feature association by @kevinschaper in #1451 +- Exploring Agent/Service Provider infores updates Jan2024 by @colleenXu in #1450 +https://github.com/biolink/biolink-model/compare/v4.1.1...v4.1.2 + +4.1.1 +----- +- Add RO mapping for gene/condition relations by @cbizon in #1443 +- fix whitespace issues by @gprice1129 in #1441 +- Adding 'phenotypic feature to disease association' plus related mixins by @RichardBruskiewich in #1444 +- Documentation bug fixes and adding more examples and visualizations to help with the treats migration by @sierra-moxon in #1445 + +https://github.com/biolink/biolink-model/compare/v4.1.0...v4.1.1 + 4.1.0 ----- Summary: 4.1.0 implements the "treats" refactoring work, making "treats" a mixin. To view the new predicate diff --git a/class_prefixes.yaml b/class_prefixes.yaml index c9f71ac6b..d01c1be91 100644 --- a/class_prefixes.yaml +++ b/class_prefixes.yaml @@ -5,7 +5,7 @@ license: https://creativecommons.org/publicdomain/zero/1.0/ # Version should be kept in sync with primary Git repository release tag -version: 4.1.0 +version: 4.1.5 default_prefix: biolink default_range: string From 25741c4cfea3ab94f651adc72004fa2aa6f00217 Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Mon, 4 Mar 2024 10:09:34 -0800 Subject: [PATCH 2/3] fix up changelog for 4.1.5 --- ChangeLog | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/ChangeLog b/ChangeLog index 011edba2f..01178f9fe 100644 --- a/ChangeLog +++ b/ChangeLog @@ -2,7 +2,8 @@ CHANGES ======= 4.1.5 ----- - +- clean up spell config, extend contraindicated to include biological process, add mappings by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1461 +https://github.com/biolink/biolink-model/compare/v4.1.4...v4.1.5 4.1.4 ----- From eb41b704521bf55ac61d008ad5f7642ff9da177f Mon Sep 17 00:00:00 2001 From: Sierra Taylor Moxon Date: Mon, 4 Mar 2024 10:14:36 -0800 Subject: [PATCH 3/3] fix merge conflict --- ChangeLog | 1 - 1 file changed, 1 deletion(-) diff --git a/ChangeLog b/ChangeLog index 01178f9fe..9695976f1 100644 --- a/ChangeLog +++ b/ChangeLog @@ -93,7 +93,6 @@ and a new gh-pages documentation layout. * @glass-ships made their first contribution in https://github.com/biolink/biolink-model/pull/1404 **Full Changelog**: https://github.com/biolink/biolink-model/compare/v3.5.4...v3.6.0 ->>>>>>> master 3.5.4 -----