From 3721683171c8693fc09060503e5cbb1422a7f33d Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Fri, 8 Jul 2022 23:20:17 +0000 Subject: [PATCH] Regenerate artifacts from biolink-model.yaml --- biolink-model.graphql | 2 +- biolink-model.owl.ttl | 752 +++++++++--------- biolink-model.proto | 2 +- biolink-model.shex | 2 +- biolink-model.shexj | 2 +- biolink-model.ttl | 740 ++++++++--------- biolink-modeln.shex | 2 +- biolink-modeln.shexj | 2 +- biolink/model.py | 4 +- context.jsonld | 2 +- contextn.jsonld | 2 +- golr-views/RNA_product_config.yaml | 2 +- golr-views/RNA_product_isoform_config.yaml | 2 +- golr-views/activity_config.yaml | 2 +- golr-views/agent_config.yaml | 2 +- golr-views/anatomical_entity_config.yaml | 2 +- ...l_entity_ontogenic_association_config.yaml | 2 +- ...cal_entity_part_of_association_config.yaml | 2 +- golr-views/article_config.yaml | 2 +- golr-views/association_config.yaml | 2 +- golr-views/attribute_config.yaml | 2 +- golr-views/behavior_config.yaml | 2 +- ...behavioral_feature_association_config.yaml | 2 +- golr-views/behavioral_exposure_config.yaml | 2 +- golr-views/behavioral_feature_config.yaml | 2 +- golr-views/biological_process_config.yaml | 2 +- ...biological_process_or_activity_config.yaml | 2 +- golr-views/biological_sex_config.yaml | 2 +- golr-views/biotic_exposure_config.yaml | 2 +- golr-views/book_chapter_config.yaml | 2 +- golr-views/book_config.yaml | 2 +- golr-views/case_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/cell_config.yaml | 2 +- ...a_model_of_disease_association_config.yaml | 2 +- golr-views/cell_line_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/cellular_component_config.yaml | 2 +- ...sesses_named_thing_association_config.yaml | 2 +- golr-views/chemical_entity_config.yaml | 2 +- golr-views/chemical_exposure_config.yaml | 2 +- golr-views/chemical_mixture_config.yaml | 2 +- golr-views/chemical_role_config.yaml | 2 +- ...emical_to_chemical_association_config.yaml | 2 +- ...hemical_derivation_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- .../chemical_to_gene_association_config.yaml | 2 +- ...hemical_to_pathway_association_config.yaml | 2 +- golr-views/clinical_attribute_config.yaml | 2 +- golr-views/clinical_course_config.yaml | 2 +- golr-views/clinical_entity_config.yaml | 2 +- golr-views/clinical_finding_config.yaml | 2 +- golr-views/clinical_intervention_config.yaml | 2 +- golr-views/clinical_measurement_config.yaml | 2 +- golr-views/clinical_modifier_config.yaml | 2 +- golr-views/clinical_trial_config.yaml | 2 +- golr-views/coding_sequence_config.yaml | 2 +- golr-views/cohort_config.yaml | 2 +- .../complex_chemical_exposure_config.yaml | 2 +- .../complex_molecular_mixture_config.yaml | 2 +- golr-views/confidence_level_config.yaml | 2 +- .../contributor_association_config.yaml | 2 +- golr-views/dataset_config.yaml | 2 +- golr-views/dataset_distribution_config.yaml | 2 +- golr-views/dataset_summary_config.yaml | 2 +- golr-views/dataset_version_config.yaml | 2 +- golr-views/device_config.yaml | 2 +- golr-views/disease_config.yaml | 2 +- .../disease_or_phenotypic_feature_config.yaml | 2 +- ...or_phenotypic_feature_exposure_config.yaml | 2 +- ...eature_to_location_association_config.yaml | 2 +- ..._to_exposure_event_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/drug_config.yaml | 2 +- golr-views/drug_exposure_config.yaml | 2 +- .../drug_to_gene_association_config.yaml | 2 +- ...g_to_gene_interaction_exposure_config.yaml | 2 +- ...le_gene_to_disease_association_config.yaml | 2 +- .../entity_to_disease_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/environmental_exposure_config.yaml | 2 +- golr-views/environmental_feature_config.yaml | 2 +- ...environmental_food_contaminant_config.yaml | 2 +- golr-views/environmental_process_config.yaml | 2 +- golr-views/event_config.yaml | 2 +- golr-views/evidence_type_config.yaml | 2 +- golr-views/exon_config.yaml | 2 +- ...xon_to_transcript_relationship_config.yaml | 2 +- ...e_event_to_outcome_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/food_additive_config.yaml | 2 +- golr-views/food_config.yaml | 2 +- golr-views/functional_association_config.yaml | 2 +- ...a_model_of_disease_association_config.yaml | 2 +- golr-views/gene_config.yaml | 2 +- golr-views/gene_family_config.yaml | 2 +- ...ributes_to_disease_association_config.yaml | 2 +- .../gene_regulatory_relationship_config.yaml | 2 +- .../gene_to_disease_association_config.yaml | 2 +- ...to_expression_site_association_config.yaml | 2 +- ..._gene_coexpression_association_config.yaml | 2 +- ...e_to_gene_homology_association_config.yaml | 2 +- ...e_to_gene_product_relationship_config.yaml | 2 +- .../gene_to_go_term_association_config.yaml | 2 +- .../gene_to_pathway_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/genome_config.yaml | 2 +- .../genomic_background_exposure_config.yaml | 2 +- .../genomic_sequence_localization_config.yaml | 2 +- ...a_model_of_disease_association_config.yaml | 2 +- golr-views/genotype_config.yaml | 2 +- ...enotype_to_disease_association_config.yaml | 2 +- .../genotype_to_gene_association_config.yaml | 2 +- ...e_to_genotype_part_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- ...enotype_to_variant_association_config.yaml | 2 +- golr-views/genotypic_sex_config.yaml | 2 +- golr-views/geographic_exposure_config.yaml | 2 +- .../geographic_location_at_time_config.yaml | 2 +- golr-views/geographic_location_config.yaml | 2 +- .../gross_anatomical_structure_config.yaml | 2 +- golr-views/haplotype_config.yaml | 2 +- golr-views/hospitalization_config.yaml | 2 +- golr-views/individual_organism_config.yaml | 2 +- ...ity_to_named_thing_association_config.yaml | 2 +- golr-views/information_resource_config.yaml | 2 +- golr-views/inheritance_config.yaml | 2 +- golr-views/life_stage_config.yaml | 2 +- ...biological_process_association_config.yaml | 2 +- ...cellular_component_association_config.yaml | 2 +- ...molecular_activity_association_config.yaml | 2 +- golr-views/macronutrient_config.yaml | 2 +- golr-views/material_sample_config.yaml | 2 +- ..._sample_derivation_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- golr-views/microRNA_config.yaml | 2 +- golr-views/micronutrient_config.yaml | 2 +- golr-views/molecular_activity_config.yaml | 2 +- ...to_chemical_entity_association_config.yaml | 2 +- ...molecular_activity_association_config.yaml | 2 +- ...ctivity_to_pathway_association_config.yaml | 2 +- golr-views/molecular_entity_config.yaml | 2 +- golr-views/molecular_mixture_config.yaml | 2 +- golr-views/named_thing_config.yaml | 2 +- golr-views/noncoding_RNA_product_config.yaml | 2 +- golr-views/nucleic_acid_entity_config.yaml | 2 +- .../nucleic_acid_sequence_motif_config.yaml | 2 +- golr-views/nutrient_config.yaml | 2 +- golr-views/onset_config.yaml | 2 +- golr-views/organism_attribute_config.yaml | 2 +- golr-views/organism_taxon_config.yaml | 2 +- ..._to_organism_taxon_interaction_config.yaml | 2 +- ..._organism_taxon_specialization_config.yaml | 2 +- ...ganism_to_organism_association_config.yaml | 2 +- ...a_model_of_disease_association_config.yaml | 2 +- ...rwise_gene_to_gene_interaction_config.yaml | 2 +- ...pairwise_molecular_interaction_config.yaml | 2 +- ...thological_anatomical_exposure_config.yaml | 2 +- ...hological_anatomical_structure_config.yaml | 2 +- golr-views/pathological_process_config.yaml | 2 +- .../pathological_process_exposure_config.yaml | 2 +- golr-views/pathway_config.yaml | 2 +- golr-views/phenomenon_config.yaml | 2 +- golr-views/phenotypic_feature_config.yaml | 2 +- golr-views/phenotypic_quality_config.yaml | 2 +- golr-views/phenotypic_sex_config.yaml | 2 +- golr-views/physical_entity_config.yaml | 2 +- golr-views/physiological_process_config.yaml | 2 +- golr-views/planetary_entity_config.yaml | 2 +- golr-views/polypeptide_config.yaml | 2 +- ...lation_of_individual_organisms_config.yaml | 2 +- ...tion_to_population_association_config.yaml | 2 +- golr-views/procedure_config.yaml | 2 +- golr-views/processed_material_config.yaml | 2 +- golr-views/protein_config.yaml | 2 +- golr-views/protein_domain_config.yaml | 2 +- golr-views/protein_family_config.yaml | 2 +- golr-views/protein_isoform_config.yaml | 2 +- golr-views/publication_config.yaml | 2 +- golr-views/quantity_value_config.yaml | 2 +- ...action_to_catalyst_association_config.yaml | 2 +- ...ion_to_participant_association_config.yaml | 2 +- golr-views/reagent_targeted_gene_config.yaml | 2 +- golr-views/sequence_association_config.yaml | 2 +- .../sequence_feature_relationship_config.yaml | 2 +- golr-views/sequence_variant_config.yaml | 2 +- golr-views/serial_config.yaml | 2 +- golr-views/severity_value_config.yaml | 2 +- golr-views/siRNA_config.yaml | 2 +- golr-views/small_molecule_config.yaml | 2 +- golr-views/snv_config.yaml | 2 +- .../socioeconomic_attribute_config.yaml | 2 +- golr-views/socioeconomic_exposure_config.yaml | 2 +- golr-views/study_population_config.yaml | 2 +- .../taxon_to_taxon_association_config.yaml | 2 +- golr-views/transcript_config.yaml | 2 +- ...ranscript_to_gene_relationship_config.yaml | 2 +- golr-views/treatment_config.yaml | 2 +- ...a_model_of_disease_association_config.yaml | 2 +- ...variant_to_disease_association_config.yaml | 2 +- .../variant_to_gene_association_config.yaml | 2 +- ...to_gene_expression_association_config.yaml | 2 +- ...phenotypic_feature_association_config.yaml | 2 +- ...iant_to_population_association_config.yaml | 2 +- golr-views/vitamin_config.yaml | 2 +- golr-views/zygosity_config.yaml | 2 +- json-schema/biolink-model.json | 2 +- 207 files changed, 952 insertions(+), 952 deletions(-) diff --git a/biolink-model.graphql b/biolink-model.graphql index 962d6e2ead..4080197bfe 100644 --- a/biolink-model.graphql +++ b/biolink-model.graphql @@ -1,5 +1,5 @@ # metamodel_version: 1.7.0 -# version: 2.4.4 +# version: 2.4.5 type Activity implements ActivityAndBehavior { id: String! diff --git a/biolink-model.owl.ttl b/biolink-model.owl.ttl index fc8cb8d9db..c451fe3c00 100644 --- a/biolink-model.owl.ttl +++ b/biolink-model.owl.ttl @@ -107,11 +107,11 @@ biolink:UnclassifiedOntologyClass, biolink:VariantToEntityAssociationMixin ; dct:license "https://creativecommons.org/publicdomain/zero/1.0/" ; - pav:version "2.4.4" ; - linkml:generation_date "2022-07-08T22:39:30" ; + pav:version "2.4.5" ; + linkml:generation_date "2022-07-08T23:17:44" ; linkml:metamodel_version "1.7.0" ; linkml:source_file "biolink-model.yaml" ; - linkml:source_file_date "2022-07-08T22:37:18" ; + linkml:source_file_date "2022-07-08T23:14:36" ; linkml:source_file_size 346733 . biolink:Activity a owl:Class ; @@ -132,29 +132,29 @@ biolink:Activity a owl:Class ; biolink:AnatomicalEntityToAnatomicalEntityOntogenicAssociation a owl:Class ; rdfs:label "anatomical entity to anatomical entity ontogenic association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; + owl:onClass biolink:AnatomicalEntity ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:AnatomicalEntity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:AnatomicalEntity ; - owl:onProperty rdf:object ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], biolink:AnatomicalEntityToAnatomicalEntityAssociation . biolink:AnatomicalEntityToAnatomicalEntityPartOfAssociation a owl:Class ; rdfs:label "anatomical entity to anatomical entity part of association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:AnatomicalEntity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:AnatomicalEntity ; owl:onProperty rdf:object ; @@ -167,10 +167,6 @@ biolink:Article a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:issue ], - [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty biolink:published_in ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -179,34 +175,38 @@ biolink:Article a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:iso_abbreviation ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty biolink:published_in ; + owl:qualifiedCardinality 1 ], biolink:Publication . biolink:BehaviorToBehavioralFeatureAssociation a owl:Class ; rdfs:label "behavior to behavioral feature association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:Behavior ; - owl:onProperty rdf:subject ; + owl:onClass biolink:BehavioralFeature ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], + owl:onClass biolink:BiologicalSex ; + owl:onProperty biolink:sex_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:FrequencyValue ; - owl:onProperty biolink:frequency_qualifier ], + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; owl:onProperty biolink:onset_qualifier ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:BiologicalSex ; - owl:onProperty biolink:sex_qualifier ], - [ a owl:Restriction ; - owl:onClass biolink:BehavioralFeature ; - owl:onProperty rdf:object ; + owl:onClass biolink:Behavior ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:FrequencyValue ; + owl:onProperty biolink:frequency_qualifier ], biolink:Association, biolink:EntityToPhenotypicFeatureAssociationMixin . @@ -249,10 +249,6 @@ biolink:Book a owl:Class ; biolink:CaseToPhenotypicFeatureAssociation a owl:Class ; rdfs:label "case to phenotypic feature association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:BiologicalSex ; - owl:onProperty biolink:sex_qualifier ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:SeverityValue ; owl:onProperty biolink:severity_qualifier ], @@ -260,6 +256,10 @@ biolink:CaseToPhenotypicFeatureAssociation a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:FrequencyValue ; owl:onProperty biolink:frequency_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:BiologicalSex ; + owl:onProperty biolink:sex_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; @@ -281,20 +281,20 @@ biolink:CellLineAsAModelOfDiseaseAssociation a owl:Class ; rdfs:label "cell line as a model of disease association" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:FrequencyValue ; - owl:onProperty biolink:frequency_qualifier ], + owl:onClass biolink:Onset ; + owl:onProperty biolink:onset_qualifier ], [ a owl:Restriction ; owl:onClass biolink:CellLine ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:Onset ; - owl:onProperty biolink:onset_qualifier ], + owl:onClass biolink:FrequencyValue ; + owl:onProperty biolink:frequency_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], biolink:CellLineToDiseaseOrPhenotypicFeatureAssociation, biolink:EntityToDiseaseAssociationMixin, biolink:ModelToDiseaseAssociationMixin . @@ -302,10 +302,6 @@ biolink:CellLineAsAModelOfDiseaseAssociation a owl:Class ; biolink:ChemicalEntityAssessesNamedThingAssociation a owl:Class ; rdfs:label "chemical entity assesses named thing association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:ChemicalEntity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], @@ -313,25 +309,29 @@ biolink:ChemicalEntityAssessesNamedThingAssociation a owl:Class ; owl:onClass biolink:NamedThing ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:ChemicalToChemicalDerivationAssociation a owl:Class ; rdfs:label "chemical to chemical derivation association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom biolink:MacromolecularMachineMixin ; - owl:onProperty biolink:catalyst_qualifier ], + owl:onClass biolink:ChemicalEntity ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:ChemicalEntity ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:allValuesFrom biolink:MacromolecularMachineMixin ; + owl:onProperty biolink:catalyst_qualifier ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass biolink:ChemicalEntity ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], biolink:ChemicalToChemicalAssociation . biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation a owl:Class ; @@ -412,13 +412,13 @@ biolink:ContributorAssociation a owl:Class ; owl:onClass biolink:InformationContentEntity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom biolink:OntologyClass ; - owl:onProperty biolink:qualifiers ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:allValuesFrom biolink:OntologyClass ; + owl:onProperty biolink:qualifiers ], [ a owl:Restriction ; owl:onClass biolink:Agent ; owl:onProperty rdf:object ; @@ -465,17 +465,17 @@ biolink:DiseaseToPhenotypicFeatureAssociation a owl:Class ; owl:onClass biolink:FrequencyValue ; owl:onProperty biolink:frequency_qualifier ], [ a owl:Restriction ; - owl:onClass biolink:PhenotypicFeature ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], [ a owl:Restriction ; owl:onClass biolink:Disease ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], + owl:onClass biolink:PhenotypicFeature ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; @@ -506,16 +506,16 @@ biolink:DrugToGeneInteractionExposure a owl:Class ; biolink:DruggableGeneToDiseaseAssociation a owl:Class ; rdfs:label "druggable gene to disease association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom biolink:DruggableGeneCategoryEnum ; - owl:onProperty biolink:has_evidence ], + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:GeneOrGeneProduct ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], + owl:allValuesFrom biolink:DruggableGeneCategoryEnum ; + owl:onProperty biolink:has_evidence ], biolink:EntityToDiseaseAssociationMixin, biolink:GeneToDiseaseAssociation, biolink:GeneToEntityAssociationMixin . @@ -578,13 +578,13 @@ biolink:ExonToTranscriptRelationship a owl:Class ; biolink:ExposureEventToOutcomeAssociation a owl:Class ; rdfs:label "exposure event to outcome association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:PopulationOfIndividualOrganisms ; - owl:onProperty biolink:has_population_context ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:TimeType ; owl:onProperty biolink:has_temporal_context ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:PopulationOfIndividualOrganisms ; + owl:onProperty biolink:has_population_context ], biolink:Association, biolink:EntityToOutcomeAssociationMixin, biolink:ExposureEventToEntityAssociationMixin . @@ -592,25 +592,25 @@ biolink:ExposureEventToOutcomeAssociation a owl:Class ; biolink:ExposureEventToPhenotypicFeatureAssociation a owl:Class ; rdfs:label "exposure event to phenotypic feature association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:ExposureEvent ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; owl:onProperty biolink:onset_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:BiologicalSex ; + owl:onProperty biolink:sex_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:FrequencyValue ; owl:onProperty biolink:frequency_qualifier ], + [ a owl:Restriction ; + owl:onClass biolink:ExposureEvent ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:BiologicalSex ; - owl:onProperty biolink:sex_qualifier ], + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], biolink:Association, biolink:EntityToPhenotypicFeatureAssociationMixin . @@ -666,11 +666,11 @@ biolink:GeneRegulatoryRelationship a owl:Class ; rdfs:label "gene regulatory relationship" ; rdfs:subClassOf [ a owl:Restriction ; owl:onClass biolink:GeneOrGeneProduct ; - owl:onProperty rdf:subject ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:GeneOrGeneProduct ; - owl:onProperty rdf:object ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; @@ -683,23 +683,23 @@ biolink:GeneToExpressionSiteAssociation a owl:Class ; rdfs:seeAlso "https://github.com/monarch-initiative/ingest-artifacts/tree/master/sources/BGee" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:LifeStage ; - owl:onProperty biolink:stage_qualifier ], + owl:onClass biolink:OntologyClass ; + owl:onProperty biolink:quantifier_qualifier ], [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; + owl:onClass biolink:GeneOrGeneProduct ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:AnatomicalEntity ; - owl:onProperty rdf:object ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:OntologyClass ; - owl:onProperty biolink:quantifier_qualifier ], + owl:onClass biolink:LifeStage ; + owl:onProperty biolink:stage_qualifier ], [ a owl:Restriction ; - owl:onClass biolink:GeneOrGeneProduct ; - owl:onProperty rdf:subject ; + owl:onClass biolink:AnatomicalEntity ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], biolink:Association ; skos:editorialNote "TBD: introduce subclasses for distinction between wild-type and experimental conditions?" . @@ -707,35 +707,31 @@ biolink:GeneToExpressionSiteAssociation a owl:Class ; biolink:GeneToGeneCoexpressionAssociation a owl:Class ; rdfs:label "gene to gene coexpression association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:AnatomicalEntity ; + owl:onProperty biolink:expression_site ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:LifeStage ; - owl:onProperty biolink:stage_qualifier ], + owl:onClass biolink:DiseaseOrPhenotypicFeature ; + owl:onProperty biolink:phenotypic_state ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:OntologyClass ; owl:onProperty biolink:quantifier_qualifier ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:AnatomicalEntity ; - owl:onProperty biolink:expression_site ], + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:DiseaseOrPhenotypicFeature ; - owl:onProperty biolink:phenotypic_state ], + owl:onClass biolink:LifeStage ; + owl:onProperty biolink:stage_qualifier ], biolink:GeneExpressionMixin, biolink:GeneToGeneAssociation . biolink:GeneToGeneHomologyAssociation a owl:Class ; rdfs:label "gene to gene homology association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:GeneOrGeneProduct ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], @@ -743,15 +739,15 @@ biolink:GeneToGeneHomologyAssociation a owl:Class ; owl:onClass biolink:GeneOrGeneProduct ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], biolink:GeneToGeneAssociation . biolink:GeneToGeneProductRelationship a owl:Class ; rdfs:label "gene to gene product relationship" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:Gene ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:GeneProductMixin ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], @@ -759,6 +755,10 @@ biolink:GeneToGeneProductRelationship a owl:Class ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:Gene ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], biolink:SequenceFeatureRelationship . biolink:GeneToGoTermAssociation a owl:Class ; @@ -792,28 +792,28 @@ biolink:GeneToPhenotypicFeatureAssociation a owl:Class ; rdfs:label "gene to phenotypic feature association" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], - [ a owl:Restriction ; - owl:onClass biolink:PhenotypicFeature ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], + owl:onClass biolink:FrequencyValue ; + owl:onProperty biolink:frequency_qualifier ], [ a owl:Restriction ; - owl:onClass biolink:GeneOrGeneProduct ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:Onset ; + owl:onProperty biolink:onset_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:BiologicalSex ; owl:onProperty biolink:sex_qualifier ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:Onset ; - owl:onProperty biolink:onset_qualifier ], + owl:onClass biolink:GeneOrGeneProduct ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:FrequencyValue ; - owl:onProperty biolink:frequency_qualifier ], + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], + [ a owl:Restriction ; + owl:onClass biolink:PhenotypicFeature ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:Association, biolink:EntityToPhenotypicFeatureAssociationMixin, biolink:GeneToEntityAssociationMixin ; @@ -837,19 +837,19 @@ biolink:Genome a owl:Class ; biolink:GenomicBackgroundExposure a owl:Class ; rdfs:label "genomic background exposure" ; rdfs:subClassOf [ a owl:Restriction ; - owl:allValuesFrom biolink:OrganismTaxon ; - owl:onProperty biolink:in_taxon ], - [ a owl:Restriction ; owl:allValuesFrom biolink:Gene ; owl:onProperty biolink:has_gene_or_gene_product ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:BiologicalSequence ; - owl:onProperty biolink:has_biological_sequence ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:TimeType ; owl:onProperty biolink:timepoint ], + [ a owl:Restriction ; + owl:allValuesFrom biolink:OrganismTaxon ; + owl:onProperty biolink:in_taxon ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:BiologicalSequence ; + owl:onProperty biolink:has_biological_sequence ], biolink:Attribute, biolink:ExposureEvent, biolink:GeneGroupingMixin, @@ -871,10 +871,6 @@ biolink:GenotypeAsAModelOfDiseaseAssociation a owl:Class ; biolink:GenotypeToGeneAssociation a owl:Class ; rdfs:label "genotype to gene association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:Gene ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:Genotype ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], @@ -882,6 +878,10 @@ biolink:GenotypeToGeneAssociation a owl:Class ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:Gene ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:GenotypeToGenotypePartAssociation a owl:Class ; @@ -890,14 +890,14 @@ biolink:GenotypeToGenotypePartAssociation a owl:Class ; owl:onClass biolink:Genotype ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass biolink:Genotype ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:Genotype ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:GenotypeToPhenotypicFeatureAssociation a owl:Class ; @@ -906,26 +906,26 @@ biolink:GenotypeToPhenotypicFeatureAssociation a owl:Class ; owl:onClass biolink:Genotype ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:FrequencyValue ; - owl:onProperty biolink:frequency_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; owl:onProperty biolink:onset_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], + owl:onClass biolink:FrequencyValue ; + owl:onProperty biolink:frequency_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:BiologicalSex ; + owl:onProperty biolink:sex_qualifier ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:BiologicalSex ; - owl:onProperty biolink:sex_qualifier ], + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], biolink:Association, biolink:EntityToPhenotypicFeatureAssociationMixin, biolink:GenotypeToEntityAssociationMixin . @@ -933,6 +933,10 @@ biolink:GenotypeToPhenotypicFeatureAssociation a owl:Class ; biolink:GenotypeToVariantAssociation a owl:Class ; rdfs:label "genotype to variant association" ; rdfs:subClassOf [ a owl:Restriction ; + owl:onClass biolink:Genotype ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], @@ -940,10 +944,6 @@ biolink:GenotypeToVariantAssociation a owl:Class ; owl:onClass biolink:SequenceVariant ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass biolink:Genotype ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], biolink:Association . biolink:GenotypicSex a owl:Class ; @@ -1020,14 +1020,14 @@ biolink:InformationContentEntityToNamedThingAssociation a owl:Class ; owl:onClass biolink:NamedThing ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass biolink:NamedThing ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:NamedThing ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:Inheritance a owl:Class ; @@ -1082,14 +1082,14 @@ biolink:MaterialSampleDerivationAssociation a owl:Class ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass biolink:NamedThing ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:MaterialSample ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:NamedThing ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:MaterialSampleToDiseaseOrPhenotypicFeatureAssociation a owl:Class ; @@ -1108,40 +1108,40 @@ biolink:MicroRNA a owl:Class ; biolink:MolecularActivityToChemicalEntityAssociation a owl:Class ; rdfs:label "molecular activity to chemical entity association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:ChemicalEntity ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:MolecularActivity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:ChemicalEntity ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:MolecularActivityToMolecularActivityAssociation a owl:Class ; rdfs:label "molecular activity to molecular activity association" ; rdfs:subClassOf [ a owl:Restriction ; owl:onClass biolink:MolecularActivity ; - owl:onProperty rdf:subject ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:MolecularActivity ; - owl:onProperty rdf:object ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], biolink:Association . biolink:MolecularActivityToPathwayAssociation a owl:Class ; rdfs:label "molecular activity to pathway association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:MolecularActivity ; - owl:onProperty rdf:subject ; + owl:onClass biolink:Pathway ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:Pathway ; - owl:onProperty rdf:object ; + owl:onClass biolink:MolecularActivity ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], biolink:Association . @@ -1177,14 +1177,14 @@ biolink:OrganismTaxonToOrganismTaxonInteraction a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:associated_environmental_context ], - [ a owl:Restriction ; - owl:onClass biolink:OrganismTaxon ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:OrganismTaxon ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:OrganismTaxon ; owl:onProperty rdf:object ; @@ -1194,10 +1194,6 @@ biolink:OrganismTaxonToOrganismTaxonInteraction a owl:Class ; biolink:OrganismTaxonToOrganismTaxonSpecialization a owl:Class ; rdfs:label "organism taxon to organism taxon specialization" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:OrganismTaxon ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], @@ -1205,6 +1201,10 @@ biolink:OrganismTaxonToOrganismTaxonSpecialization a owl:Class ; owl:onClass biolink:OrganismTaxon ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], biolink:OrganismTaxonToOrganismTaxonAssociation . biolink:OrganismToOrganismAssociation a owl:Class ; @@ -1222,6 +1222,10 @@ biolink:OrganismToOrganismAssociation a owl:Class ; biolink:OrganismalEntityAsAModelOfDiseaseAssociation a owl:Class ; rdfs:label "organismal entity as a model of disease association" ; rdfs:subClassOf [ a owl:Restriction ; + owl:onClass biolink:OrganismalEntity ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:FrequencyValue ; owl:onProperty biolink:frequency_qualifier ], @@ -1229,10 +1233,6 @@ biolink:OrganismalEntityAsAModelOfDiseaseAssociation a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:SeverityValue ; owl:onProperty biolink:severity_qualifier ], - [ a owl:Restriction ; - owl:onClass biolink:OrganismalEntity ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; @@ -1252,16 +1252,16 @@ biolink:PairwiseMolecularInteraction a owl:Class ; owl:onProperty biolink:id ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:MolecularEntity ; - owl:onProperty rdf:object ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:MolecularEntity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; + owl:onClass biolink:MolecularEntity ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], biolink:PairwiseGeneToGeneInteraction . @@ -1355,6 +1355,10 @@ biolink:PhysiologicalProcess a owl:Class ; biolink:PopulationToPopulationAssociation a owl:Class ; rdfs:label "population to population association" ; rdfs:subClassOf [ a owl:Restriction ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; owl:onClass biolink:PopulationOfIndividualOrganisms ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], @@ -1362,10 +1366,6 @@ biolink:PopulationToPopulationAssociation a owl:Class ; owl:onClass biolink:PopulationOfIndividualOrganisms ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], biolink:Association . biolink:PredicateQualifierEnum a owl:Class ; @@ -1478,7 +1478,7 @@ biolink:Serial a owl:Class ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty biolink:iso_abbreviation ], + owl:onProperty biolink:issue ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty biolink:id ; @@ -1494,7 +1494,7 @@ biolink:Serial a owl:Class ; [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty biolink:issue ], + owl:onProperty biolink:iso_abbreviation ], biolink:Publication ; skos:altLabel "journal" . @@ -1540,16 +1540,16 @@ biolink:Snv a owl:Class ; biolink:SocioeconomicExposure a owl:Class ; rdfs:label "socioeconomic exposure" ; - rdfs:subClassOf [ a owl:Class ; + rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:TimeType ; + owl:onProperty biolink:timepoint ], + [ a owl:Class ; owl:intersectionOf ( [ a owl:Restriction ; owl:allValuesFrom biolink:SocioeconomicAttribute ; owl:onProperty biolink:has_attribute ] [ a owl:Restriction ; owl:onProperty biolink:has_attribute ; owl:someValuesFrom biolink:SocioeconomicAttribute ] ) ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:TimeType ; - owl:onProperty biolink:timepoint ], biolink:Attribute, biolink:ExposureEvent . @@ -1561,11 +1561,11 @@ biolink:TaxonToTaxonAssociation a owl:Class ; rdfs:label "taxon to taxon association" ; rdfs:subClassOf [ a owl:Restriction ; owl:onClass biolink:OrganismTaxon ; - owl:onProperty rdf:subject ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:OrganismTaxon ; - owl:onProperty rdf:object ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], biolink:Association . @@ -1594,25 +1594,25 @@ biolink:VariantAsAModelOfDiseaseAssociation a owl:Class ; biolink:VariantToGeneExpressionAssociation a owl:Class ; rdfs:label "variant to gene expression association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:LifeStage ; - owl:onProperty biolink:stage_qualifier ], + owl:onClass biolink:AnatomicalEntity ; + owl:onProperty biolink:expression_site ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:DiseaseOrPhenotypicFeature ; owl:onProperty biolink:phenotypic_state ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:AnatomicalEntity ; - owl:onProperty biolink:expression_site ], + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:OntologyClass ; owl:onProperty biolink:quantifier_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:LifeStage ; + owl:onProperty biolink:stage_qualifier ], biolink:GeneExpressionMixin, biolink:VariantToGeneAssociation . @@ -1645,21 +1645,21 @@ biolink:VariantToPhenotypicFeatureAssociation a owl:Class ; biolink:VariantToPopulationAssociation a owl:Class ; rdfs:label "variant to population association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:SequenceVariant ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:PopulationOfIndividualOrganisms ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Integer ; + owl:onProperty biolink:has_count ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Double ; owl:onProperty biolink:has_percentage ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty biolink:has_total ], + owl:onClass biolink:FrequencyValue ; + owl:onProperty biolink:frequency_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Double ; @@ -1667,11 +1667,11 @@ biolink:VariantToPopulationAssociation a owl:Class ; [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; - owl:onProperty biolink:has_count ], + owl:onProperty biolink:has_total ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:FrequencyValue ; - owl:onProperty biolink:frequency_qualifier ], + owl:onClass biolink:SequenceVariant ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], biolink:Association, biolink:FrequencyQualifierMixin, biolink:FrequencyQuantifier, @@ -2152,10 +2152,6 @@ biolink:BehavioralFeature a owl:Class ; biolink:BookChapter a owl:Class ; rdfs:label "book chapter" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:Uriorcurie ; - owl:onProperty biolink:published_in ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:chapter ], @@ -2163,6 +2159,10 @@ biolink:BookChapter a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:volume ], + [ a owl:Restriction ; + owl:onClass linkml:Uriorcurie ; + owl:onProperty biolink:published_in ; + owl:qualifiedCardinality 1 ], biolink:Publication . biolink:Case a owl:Class ; @@ -2282,6 +2282,10 @@ biolink:Exon a owl:Class ; biolink:FrequencyQuantifier a owl:Class ; rdfs:label "frequency quantifier" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Integer ; + owl:onProperty biolink:has_total ], + [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Integer ; owl:onProperty biolink:has_count ], @@ -2293,10 +2297,6 @@ biolink:FrequencyQuantifier a owl:Class ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Double ; owl:onProperty biolink:has_percentage ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty biolink:has_total ], biolink:RelationshipQuantifier, linkml:mixin . @@ -2304,8 +2304,8 @@ biolink:GenotypeToDiseaseAssociation a owl:Class ; rdfs:label "genotype to disease association" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], + owl:onClass biolink:Onset ; + owl:onProperty biolink:onset_qualifier ], [ a owl:Restriction ; owl:onClass biolink:NamedThing ; owl:onProperty rdf:object ; @@ -2324,8 +2324,8 @@ biolink:GenotypeToDiseaseAssociation a owl:Class ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:Onset ; - owl:onProperty biolink:onset_qualifier ], + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], biolink:Association, biolink:EntityToDiseaseAssociationMixin, biolink:GenotypeToEntityAssociationMixin ; @@ -2336,11 +2336,11 @@ biolink:GeographicLocation a owl:Class ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty biolink:latitude ], + owl:onProperty biolink:longitude ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Float ; - owl:onProperty biolink:longitude ], + owl:onProperty biolink:latitude ], biolink:PlanetaryEntity ; skos:exactMatch STY:T083, UMLSSG:GEOG . @@ -2383,13 +2383,13 @@ biolink:Polypeptide a owl:Class ; biolink:ReactionToParticipantAssociation a owl:Class ; rdfs:label "reaction to participant association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty biolink:stoichiometry ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:ReactionDirectionEnum ; owl:onProperty biolink:reaction_direction ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Integer ; + owl:onProperty biolink:stoichiometry ], [ a owl:Restriction ; owl:onClass biolink:MolecularEntity ; owl:onProperty rdf:subject ; @@ -2428,13 +2428,13 @@ biolink:Treatment a owl:Class ; rdfs:subClassOf [ a owl:Restriction ; owl:allValuesFrom biolink:Device ; owl:onProperty biolink:has_device ], + [ a owl:Restriction ; + owl:allValuesFrom biolink:Drug ; + owl:onProperty biolink:has_drug ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:TimeType ; owl:onProperty biolink:timepoint ], - [ a owl:Restriction ; - owl:allValuesFrom biolink:Drug ; - owl:onProperty biolink:has_drug ], [ a owl:Restriction ; owl:allValuesFrom biolink:Procedure ; owl:onProperty biolink:has_procedure ], @@ -2453,29 +2453,29 @@ biolink:UnclassifiedOntologyClass a owl:Class ; biolink:VariantToDiseaseAssociation a owl:Class ; rdfs:label "variant to disease association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:Onset ; - owl:onProperty biolink:onset_qualifier ], - [ a owl:Restriction ; owl:onClass biolink:NamedThing ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; + owl:onClass biolink:NamedThing ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:SeverityValue ; owl:onProperty biolink:severity_qualifier ], [ a owl:Restriction ; - owl:onClass biolink:NamedThing ; - owl:onProperty rdf:subject ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:FrequencyValue ; owl:onProperty biolink:frequency_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:Onset ; + owl:onProperty biolink:onset_qualifier ], biolink:Association, biolink:EntityToDiseaseAssociationMixin, biolink:VariantToEntityAssociationMixin ; @@ -2484,13 +2484,13 @@ biolink:VariantToDiseaseAssociation a owl:Class ; biolink:VariantToGeneAssociation a owl:Class ; rdfs:label "variant to gene association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:Gene ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:Gene ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:Association, biolink:VariantToEntityAssociationMixin . @@ -4864,11 +4864,11 @@ biolink:AnatomicalEntityToAnatomicalEntityAssociation a owl:Class ; rdfs:label "anatomical entity to anatomical entity association" ; rdfs:subClassOf [ a owl:Restriction ; owl:onClass biolink:AnatomicalEntity ; - owl:onProperty rdf:subject ; + owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:onClass biolink:AnatomicalEntity ; - owl:onProperty rdf:object ; + owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], biolink:Association . @@ -4985,13 +4985,13 @@ biolink:EntityToExposureEventAssociationMixin a owl:Class ; biolink:EntityToFeatureOrDiseaseQualifiersMixin a owl:Class ; rdfs:label "entity to feature or disease qualifiers mixin" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:Onset ; owl:onProperty biolink:onset_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], biolink:FrequencyQualifierMixin, linkml:mixin . @@ -5647,35 +5647,35 @@ biolink:DiseaseToEntityAssociationMixin a owl:Class ; biolink:Entity a owl:Class ; rdfs:label "entity" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:LabelType ; - owl:onProperty rdfs:label ], + owl:allValuesFrom biolink:CategoryType ; + owl:onProperty biolink:category ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty biolink:source ], + owl:onClass biolink:NarrativeText ; + owl:onProperty dct:description ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:IriType ; owl:onProperty biolink:iri ], + [ a owl:Restriction ; + owl:allValuesFrom biolink:Attribute ; + owl:onProperty biolink:has_attribute ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty biolink:id ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom biolink:CategoryType ; - owl:onProperty biolink:category ], - [ a owl:Restriction ; - owl:allValuesFrom biolink:Attribute ; - owl:onProperty biolink:has_attribute ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:NarrativeText ; - owl:onProperty dct:description ], + owl:onClass linkml:String ; + owl:onProperty biolink:source ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty rdf:type ] . + owl:onProperty rdf:type ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:LabelType ; + owl:onProperty rdfs:label ] . biolink:FDAApprovalStatusEnum a owl:Class ; rdfs:label "FDA_approval_status_enum" ; @@ -5712,16 +5712,16 @@ biolink:GeneExpressionMixin a owl:Class ; owl:onProperty biolink:stage_qualifier ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:OntologyClass ; - owl:onProperty biolink:quantifier_qualifier ], + owl:onClass biolink:DiseaseOrPhenotypicFeature ; + owl:onProperty biolink:phenotypic_state ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:AnatomicalEntity ; owl:onProperty biolink:expression_site ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:DiseaseOrPhenotypicFeature ; - owl:onProperty biolink:phenotypic_state ], + owl:onClass biolink:OntologyClass ; + owl:onProperty biolink:quantifier_qualifier ], linkml:mixin . biolink:GeneOntologyClass a owl:Class ; @@ -5731,24 +5731,24 @@ biolink:GeneToDiseaseAssociation a owl:Class ; rdfs:label "gene to disease association" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:FrequencyValue ; - owl:onProperty biolink:frequency_qualifier ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:Onset ; - owl:onProperty biolink:onset_qualifier ], + owl:onClass biolink:SeverityValue ; + owl:onProperty biolink:severity_qualifier ], [ a owl:Restriction ; owl:onClass biolink:Disease ; owl:onProperty rdf:object ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:SeverityValue ; - owl:onProperty biolink:severity_qualifier ], [ a owl:Restriction ; owl:onClass biolink:GeneOrGeneProduct ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:FrequencyValue ; + owl:onProperty biolink:frequency_qualifier ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:Onset ; + owl:onProperty biolink:onset_qualifier ], biolink:Association, biolink:EntityToDiseaseAssociationMixin, biolink:GeneToEntityAssociationMixin ; @@ -6323,16 +6323,16 @@ biolink:DatasetVersion a owl:Class ; rdfs:label "dataset version" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:Dataset ; - owl:onProperty dct:source ], + owl:onClass biolink:DatasetDistribution ; + owl:onProperty dct:distribution ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty pav:version ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:DatasetDistribution ; - owl:onProperty dct:distribution ], + owl:onClass biolink:Dataset ; + owl:onProperty dct:source ], biolink:InformationContentEntity . biolink:EntityToDiseaseOrPhenotypicFeatureAssociationMixin a owl:Class ; @@ -6346,13 +6346,13 @@ biolink:EntityToDiseaseOrPhenotypicFeatureAssociationMixin a owl:Class ; biolink:FunctionalAssociation a owl:Class ; rdfs:label "functional association" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:GeneOntologyClass ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:onClass biolink:MacromolecularMachineMixin ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:GeneOntologyClass ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:Association . biolink:LifeStage a owl:Class ; @@ -6864,9 +6864,8 @@ biolink:sequence_localization_attribute a owl:ObjectProperty ; biolink:ChemicalMixture a owl:Class ; rdfs:label "chemical mixture" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty biolink:drug_regulatory_status_world_wide ], + owl:allValuesFrom biolink:DrugDeliveryEnum ; + owl:onProperty biolink:routes_of_delivery ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; @@ -6876,8 +6875,9 @@ biolink:ChemicalMixture a owl:Class ; owl:onClass biolink:ChemicalMixture ; owl:onProperty biolink:is_supplement ], [ a owl:Restriction ; - owl:allValuesFrom biolink:DrugDeliveryEnum ; - owl:onProperty biolink:routes_of_delivery ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty biolink:drug_regulatory_status_world_wide ], biolink:ChemicalEntity ; skos:closeMatch dcid:ChemicalCompound ; skos:narrowMatch , @@ -7071,13 +7071,13 @@ biolink:part_of a owl:ObjectProperty ; biolink:EntityToPhenotypicFeatureAssociationMixin a owl:Class ; rdfs:label "entity to phenotypic feature association mixin" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:PhenotypicFeature ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:BiologicalSex ; owl:onProperty biolink:sex_qualifier ], + [ a owl:Restriction ; + owl:onClass biolink:PhenotypicFeature ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], biolink:EntityToFeatureOrDiseaseQualifiersMixin, linkml:mixin . @@ -7200,14 +7200,14 @@ biolink:sex_qualifier a owl:ObjectProperty ; biolink:BiologicalProcessOrActivity a owl:Class ; rdfs:label "biological process or activity" ; rdfs:subClassOf [ a owl:Restriction ; + owl:allValuesFrom biolink:BiologicalProcessOrActivity ; + owl:onProperty biolink:has_input ], + [ a owl:Restriction ; owl:allValuesFrom biolink:BiologicalProcessOrActivity ; owl:onProperty biolink:has_output ], [ a owl:Restriction ; owl:allValuesFrom biolink:PhysicalEntity ; owl:onProperty biolink:enabled_by ], - [ a owl:Restriction ; - owl:allValuesFrom biolink:BiologicalProcessOrActivity ; - owl:onProperty biolink:has_input ], biolink:BiologicalEntity, biolink:Occurrent, biolink:OntologyClass . @@ -7238,37 +7238,37 @@ biolink:GenomicEntity a owl:Class ; biolink:GenomicSequenceLocalization a owl:Class ; rdfs:label "genomic sequence localization" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass biolink:NucleicAcidEntity ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty biolink:end_interbase_coordinate ], + owl:onClass biolink:StrandEnum ; + owl:onProperty biolink:strand ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:StrandEnum ; owl:onProperty biolink:genome_build ], - [ a owl:Restriction ; - owl:onClass biolink:PredicateType ; - owl:onProperty rdf:predicate ; - owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:PhaseEnum ; owl:onProperty biolink:phase ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Integer ; - owl:onProperty biolink:start_interbase_coordinate ], + owl:onClass biolink:NucleicAcidEntity ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:StrandEnum ; - owl:onProperty biolink:strand ], + owl:onClass linkml:Integer ; + owl:onProperty biolink:end_interbase_coordinate ], [ a owl:Restriction ; owl:onClass biolink:NucleicAcidEntity ; owl:onProperty rdf:subject ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:PredicateType ; + owl:onProperty rdf:predicate ; + owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:Integer ; + owl:onProperty biolink:start_interbase_coordinate ], biolink:SequenceAssociation ; skos:broadMatch dcid:Chromosome ; skos:exactMatch dcid:GenomeAnnotation . @@ -7277,10 +7277,10 @@ biolink:MolecularActivity a owl:Class ; rdfs:label "molecular activity" ; rdfs:subClassOf [ a owl:Restriction ; owl:allValuesFrom biolink:MolecularEntity ; - owl:onProperty biolink:has_output ], + owl:onProperty biolink:has_input ], [ a owl:Restriction ; owl:allValuesFrom biolink:MolecularEntity ; - owl:onProperty biolink:has_input ], + owl:onProperty biolink:has_output ], [ a owl:Restriction ; owl:allValuesFrom biolink:MacromolecularMachineMixin ; owl:onProperty biolink:enabled_by ], @@ -7335,20 +7335,20 @@ biolink:PhysicalEssence a owl:Class ; biolink:Agent a owl:Class ; rdfs:label "agent" ; rdfs:subClassOf [ a owl:Restriction ; - owl:onClass linkml:String ; - owl:onProperty biolink:id ; - owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:Uriorcurie ; - owl:onProperty biolink:affiliation ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:LabelType ; owl:onProperty rdfs:label ], + [ a owl:Restriction ; + owl:onClass linkml:String ; + owl:onProperty biolink:id ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:address ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:Uriorcurie ; + owl:onProperty biolink:affiliation ], biolink:AdministrativeEntity ; skos:altLabel "group" ; skos:exactMatch dct:Agent, @@ -7413,7 +7413,7 @@ biolink:InformationContentEntity a owl:Class ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty biolink:format ], + owl:onProperty biolink:license ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:Date ; @@ -7425,7 +7425,7 @@ biolink:InformationContentEntity a owl:Class ; [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty biolink:license ], + owl:onProperty biolink:format ], biolink:NamedThing ; skos:altLabel "information", "information artefact", @@ -7508,33 +7508,33 @@ biolink:AnatomicalEntity a owl:Class ; biolink:Publication a owl:Class ; rdfs:label "publication" ; rdfs:subClassOf [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty biolink:summary ], + [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty dct:type ; owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty biolink:keywords ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty biolink:summary ], + owl:onProperty biolink:pages ], [ a owl:Restriction ; owl:allValuesFrom linkml:Uriorcurie ; owl:onProperty biolink:mesh_terms ], [ a owl:Restriction ; owl:allValuesFrom linkml:String ; - owl:onProperty biolink:pages ], + owl:onProperty biolink:keywords ], [ a owl:Restriction ; owl:onClass linkml:String ; owl:onProperty biolink:id ; owl:qualifiedCardinality 1 ], - [ a owl:Restriction ; - owl:allValuesFrom linkml:String ; - owl:onProperty biolink:authors ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:LabelType ; owl:onProperty rdfs:label ], + [ a owl:Restriction ; + owl:allValuesFrom linkml:String ; + owl:onProperty biolink:authors ], biolink:InformationContentEntity ; skos:exactMatch IAO:0000311 ; skos:narrowMatch STY:T170, @@ -7561,14 +7561,14 @@ biolink:Attribute a owl:Class ; [ a owl:Restriction ; owl:allValuesFrom biolink:QuantityValue ; owl:onProperty biolink:has_quantitative_value ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:NamedThing ; - owl:onProperty biolink:has_qualitative_value ], [ a owl:Restriction ; owl:onClass biolink:OntologyClass ; owl:onProperty biolink:has_attribute_type ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:NamedThing ; + owl:onProperty biolink:has_qualitative_value ], biolink:NamedThing, biolink:OntologyClass ; skos:exactMatch SIO:000614 . @@ -7682,22 +7682,22 @@ biolink:ChemicalEntity a owl:Class ; rdfs:label "chemical entity" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty biolink:is_toxic ], + owl:onClass biolink:ChemicalEntity ; + owl:onProperty biolink:trade_name ], [ a owl:Restriction ; - owl:allValuesFrom biolink:DrugAvailabilityEnum ; - owl:onProperty biolink:available_from ], + owl:maxQualifiedCardinality 1 ; + owl:onClass linkml:String ; + owl:onProperty biolink:max_tolerated_dose ], [ a owl:Restriction ; owl:allValuesFrom biolink:ChemicalRole ; owl:onProperty biolink:has_chemical_role ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:ChemicalEntity ; - owl:onProperty biolink:trade_name ], + owl:onClass linkml:Boolean ; + owl:onProperty biolink:is_toxic ], [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:String ; - owl:onProperty biolink:max_tolerated_dose ], + owl:allValuesFrom biolink:DrugAvailabilityEnum ; + owl:onProperty biolink:available_from ], biolink:ChemicalEntityOrGeneOrGeneProduct, biolink:ChemicalEntityOrProteinOrPolypeptide, biolink:ChemicalOrDrugOrTreatment, @@ -7747,16 +7747,16 @@ biolink:OntologyClass a owl:Class ; biolink:Gene a owl:Class ; rdfs:label "gene" ; rdfs:subClassOf [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:BiologicalSequence ; - owl:onProperty biolink:has_biological_sequence ], - [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; owl:onProperty biolink:symbol ], [ a owl:Restriction ; owl:allValuesFrom biolink:LabelType ; owl:onProperty biolink:synonym ], + [ a owl:Restriction ; + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:BiologicalSequence ; + owl:onProperty biolink:has_biological_sequence ], biolink:BiologicalEntity, biolink:ChemicalEntityOrGeneOrGeneProduct, biolink:GeneOrGeneProduct, @@ -7801,55 +7801,55 @@ biolink:Association a owl:Class ; rdfs:label "association" ; rdfs:subClassOf [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:InformationResource ; - owl:onProperty biolink:knowledge_source ], + owl:onClass linkml:Boolean ; + owl:onProperty biolink:negated ], [ a owl:Restriction ; owl:onClass biolink:PredicateType ; owl:onProperty rdf:predicate ; owl:qualifiedCardinality 1 ], + [ a owl:Restriction ; + owl:onClass biolink:NamedThing ; + owl:onProperty rdf:subject ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom biolink:InformationResource ; owl:onProperty biolink:aggregator_knowledge_source ], - [ a owl:Restriction ; - owl:allValuesFrom biolink:OntologyClass ; - owl:onProperty biolink:qualifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty biolink:original_knowledge_source ], + owl:onProperty rdf:type ], [ a owl:Restriction ; - owl:onClass biolink:NamedThing ; - owl:onProperty rdf:subject ; - owl:qualifiedCardinality 1 ], + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:InformationResource ; + owl:onProperty biolink:knowledge_source ], + [ a owl:Restriction ; + owl:allValuesFrom biolink:OntologyClass ; + owl:onProperty biolink:qualifiers ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass biolink:TimeType ; owl:onProperty biolink:timepoint ], [ a owl:Restriction ; - owl:onClass biolink:NamedThing ; - owl:onProperty rdf:object ; - owl:qualifiedCardinality 1 ], + owl:allValuesFrom biolink:Publication ; + owl:onProperty biolink:publications ], [ a owl:Restriction ; owl:allValuesFrom biolink:CategoryType ; owl:onProperty biolink:category ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass biolink:InformationResource ; - owl:onProperty biolink:primary_knowledge_source ], - [ a owl:Restriction ; - owl:maxQualifiedCardinality 1 ; - owl:onClass linkml:Boolean ; - owl:onProperty biolink:negated ], [ a owl:Restriction ; owl:maxQualifiedCardinality 1 ; owl:onClass linkml:String ; - owl:onProperty rdf:type ], + owl:onProperty biolink:original_knowledge_source ], + [ a owl:Restriction ; + owl:onClass biolink:NamedThing ; + owl:onProperty rdf:object ; + owl:qualifiedCardinality 1 ], [ a owl:Restriction ; owl:allValuesFrom biolink:EvidenceType ; owl:onProperty biolink:has_evidence ], [ a owl:Restriction ; - owl:allValuesFrom biolink:Publication ; - owl:onProperty biolink:publications ], + owl:maxQualifiedCardinality 1 ; + owl:onClass biolink:InformationResource ; + owl:onProperty biolink:primary_knowledge_source ], biolink:Entity ; skos:exactMatch OBAN:association, rdf:Statement, diff --git a/biolink-model.proto b/biolink-model.proto index 7ec7293a6c..aefc4fd572 100644 --- a/biolink-model.proto +++ b/biolink-model.proto @@ -1,5 +1,5 @@ // metamodel_version: 1.7.0 -// version: 2.4.4 +// version: 2.4.5 // An activity is something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, relocating, using, or generating entities. message Activity { diff --git a/biolink-model.shex b/biolink-model.shex index 8bf359401e..b26953e4ef 100644 --- a/biolink-model.shex +++ b/biolink-model.shex @@ -1,5 +1,5 @@ # metamodel_version: 1.7.0 -# version: 2.4.4 +# version: 2.4.5 BASE PREFIX dcterms: PREFIX rdf: diff --git a/biolink-model.shexj b/biolink-model.shexj index a28802d0c8..51cc28e1ae 100644 --- a/biolink-model.shexj +++ b/biolink-model.shexj @@ -1,5 +1,5 @@ # metamodel_version: 1.7.0 -# version: 2.4.4 +# version: 2.4.5 { "type": "Schema", "@context": [ diff --git a/biolink-model.ttl b/biolink-model.ttl index aeead33c8d..c70daeb2e7 100644 --- a/biolink-model.ttl +++ b/biolink-model.ttl @@ -17,7 +17,7 @@ a linkml:SchemaDefinition ; dcterms:license "https://creativecommons.org/publicdomain/zero/1.0/" ; - pav:version "2.4.4" ; + pav:version "2.4.5" ; skos:definition "Entity and association taxonomy and datamodel for life-sciences data" ; linkml:classes , , @@ -310,258 +310,258 @@ , , ; - linkml:generation_date "2022-07-08T22:39:40"^^xsd:dateTime ; + linkml:generation_date "2022-07-08T23:17:53"^^xsd:dateTime ; linkml:id ; linkml:imports linkml:types ; linkml:metamodel_version "1.7.0" ; - linkml:prefixes [ linkml:prefix_prefix "GOREL" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ncats.drug" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ORCID" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "GTOPDB" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "FYECO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "HsapDv" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CTD" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "MAXO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "gtpo" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "MmusDv" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "os" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "OMIM.PS" ; + linkml:prefixes [ linkml:prefix_prefix "OMIM.PS" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "COG" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "WIKIDATA_PROPERTY" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "UO-PROPERTY" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "PHAROS" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "Xenbase" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "NCBIGene" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "GAMMA" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "mmmp.biomaps" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "UBERGRAPH" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "alliancegenome" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "WBbt" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "ICD10" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "PomBase" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "DOID-PROPERTY" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ChemBank" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "isbn" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "CLINVAR" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "KEGG.PATHWAY" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "isni" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ncats.bioplanet" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CTD.CHEMICAL" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "DGIdb" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "MSigDB" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CID" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "EDAM-TOPIC" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "UMLSSG" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "oboformat" ; - linkml:prefix_reference OIO: ], - [ linkml:prefix_prefix "KEGG.GENE" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "gpi" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "SNOMED" ; - linkml:prefix_reference ], [ linkml:prefix_prefix "GTEx" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "SEMMEDDB" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "interpro" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ICD9" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "fabio" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "dct" ; - linkml:prefix_reference dcterms: ], + [ linkml:prefix_prefix "CTD.DISEASE" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "dcat" ; + linkml:prefix_reference dcat: ], [ linkml:prefix_prefix "wgs" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "SIO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "prov" ; - linkml:prefix_reference prov: ], - [ linkml:prefix_prefix "EDAM-FORMAT" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "dcid" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CHEMBL.MECHANISM" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CHADO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "SEED.REACTION" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "MESH" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "alliancegenome" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "NLMID" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "doi" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "AspGD" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "LOINC" ; - linkml:prefix_reference ], [ linkml:prefix_prefix "KEGG.BRITE" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "dcat" ; - linkml:prefix_reference dcat: ], - [ linkml:prefix_prefix "MI" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "ncats.drug" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "Xenbase" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ResearchID" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "foaf" ; linkml:prefix_reference foaf: ], - [ linkml:prefix_prefix "schema" ; - linkml:prefix_reference schema1: ], - [ linkml:prefix_prefix "VMC" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "doi" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CTD.GENE" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "EFO" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "NDDF" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ExO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "GSID" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "pav" ; - linkml:prefix_reference pav: ], - [ linkml:prefix_prefix "OBAN" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "NBO-PROPERTY" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "REPODB" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "VMC" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "MSigDB" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "STY" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "EDAM-OPERATION" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "foodb.food" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "XPO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "FYPO" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "os" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "AspGD" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CLINVAR" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "MmusDv" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "gpi" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "UO-PROPERTY" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "gtpo" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ICD10" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "metacyc.reaction" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "OBAN" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ncats.bioplanet" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "biolink" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ORCID" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "UMLSSG" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "WBls" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "GOP" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "EDAM-DATA" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ResearchID" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "SNOMEDCT" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "EDAM-OPERATION" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "OBOREL" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "HCPCS" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "RXNORM" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "DrugCentral" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CTD.DISEASE" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ScopusID" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "ExO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CID" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "GSID" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "KEGG.RCLASS" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "CTD.GENE" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "ChemBank" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "KEGG.ENZYME" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "RO" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "bioschemas" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "COAR_RESOURCE" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "FYPO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "FYECO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CAID" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ICD9" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "SEMMEDDB" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CTD" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "mirbase" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "RXCUI" ; linkml:prefix_reference ], + [ linkml:prefix_prefix "GTOPDB" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "COG" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "isni" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "prov" ; + linkml:prefix_reference prov: ], + [ linkml:prefix_prefix "NBO-PROPERTY" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "qud" ; linkml:prefix_reference ], + [ linkml:prefix_prefix "GOREL" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CHADO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "dcid" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "schema" ; + linkml:prefix_reference schema1: ], + [ linkml:prefix_prefix "dct" ; + linkml:prefix_reference dcterms: ], + [ linkml:prefix_prefix "EDAM-TOPIC" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "MAXO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "medgen" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "NCIT-OBO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CHEMBL.MECHANISM" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "KEGG.GENE" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "WIKIDATA" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "ScopusID" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "DrugCentral" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "HANCESTRO" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "CPT" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "MESH" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "COAR_RESOURCE" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "SNOMED" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "foodb.compound" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "PathWhiz" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "METANETX.REACTION" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "WIKIDATA" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "OBOREL" ; + [ linkml:prefix_prefix "RO" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "linkml" ; - linkml:prefix_reference linkml: ], + [ linkml:prefix_prefix "CPT" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "PHAROS" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "UBERON_NONAMESPACE" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "SEED.REACTION" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "NDDF" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "foodb.food" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "RXNORM" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "issn" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "UBERON_CORE" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "VANDF" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "pav" ; + linkml:prefix_reference pav: ], + [ linkml:prefix_prefix "DGIdb" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "KEGG.PATHWAY" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "GAMMA" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "PANTHER.FAMILY" ; linkml:prefix_reference ], + [ linkml:prefix_prefix "NCBIGene" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "SNOMEDCT" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "KEGG.DGROUP" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "gff3" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "PomBase" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "WIKIDATA_PROPERTY" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "bioschemas" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "METANETX.REACTION" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "SIO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "UBERON_CORE" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "CTD.CHEMICAL" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "WBVocab" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "fabio" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "EDAM-DATA" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "oboformat" ; + linkml:prefix_reference OIO: ], + [ linkml:prefix_prefix "linkml" ; + linkml:prefix_reference linkml: ], + [ linkml:prefix_prefix "UBERGRAPH" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "apollo" ; linkml:prefix_reference ], + [ linkml:prefix_prefix "NLMID" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "interpro" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "GOP" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "mmmp.biomaps" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "INO" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "mirbase" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "EDAM-FORMAT" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "HsapDv" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "XPO" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "KEGG.ENZYME" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "ECTO" ; linkml:prefix_reference ], - [ linkml:prefix_prefix "biolink" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "CAID" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "WBVocab" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "metacyc.reaction" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "KEGG.DGROUP" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "DOID-PROPERTY" ; - linkml:prefix_reference ], + [ linkml:prefix_prefix "PathWhiz" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "LOINC" ; + linkml:prefix_reference ], + [ linkml:prefix_prefix "MI" ; + linkml:prefix_reference ], [ linkml:prefix_prefix "ORPHA" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "REPODB" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "gff3" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "VANDF" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "medgen" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "UBERON_NONAMESPACE" ; - linkml:prefix_reference ], - [ linkml:prefix_prefix "NCIT-OBO" ; - linkml:prefix_reference ] ; + linkml:prefix_reference ] ; linkml:slots , , , @@ -1220,7 +1220,7 @@ , ; linkml:source_file "biolink-model.yaml" ; - linkml:source_file_date "2022-07-08T22:37:18"^^xsd:dateTime ; + linkml:source_file_date "2022-07-08T23:14:36"^^xsd:dateTime ; linkml:source_file_size 346733 ; linkml:subsets , , @@ -2578,11 +2578,11 @@ linkml:domain ; linkml:domain_of ; linkml:examples [ a linkml:Example ; - skos:definition "abnormal brain ventricle size" ; - skos:example "MP:0013229" ], - [ a linkml:Example ; skos:definition "Ehlers-Danlos syndrome, vascular type" ; - skos:example "MONDO:0017314" ] ; + skos:example "MONDO:0017314" ], + [ a linkml:Example ; + skos:definition "abnormal brain ventricle size" ; + skos:example "MP:0013229" ] ; linkml:is_a ; linkml:is_usage_slot true ; linkml:local_names [ linkml:ga4gh [ skos:altLabel "descriptor" ; @@ -2653,12 +2653,12 @@ linkml:examples [ a linkml:Example ; skos:definition "Hyperkinesis" ; skos:example "HP:0002487" ], - [ a linkml:Example ; - skos:definition "axon morphology variant" ; - skos:example "WBPhenotype:0000180" ], [ a linkml:Example ; skos:definition "abnormal circulating bilirubin level" ; - skos:example "MP:0001569" ] ; + skos:example "MP:0001569" ], + [ a linkml:Example ; + skos:definition "axon morphology variant" ; + skos:example "WBPhenotype:0000180" ] ; linkml:is_a ; linkml:is_usage_slot true ; linkml:local_names [ linkml:ga4gh [ skos:altLabel "descriptor" ; @@ -5117,11 +5117,11 @@ linkml:domain ; linkml:domain_of ; linkml:examples [ a linkml:Example ; - skos:definition "ClinVar representation of NM_000059.3(BRCA2):c.7007G>A (p.Arg2336His)" ; - skos:example "ClinVar:38077" ], - [ a linkml:Example ; skos:definition "chr13:g.32921033G>C (hg19) in ClinGen" ; - skos:example "ClinGen:CA024716" ] ; + skos:example "ClinGen:CA024716" ], + [ a linkml:Example ; + skos:definition "ClinVar representation of NM_000059.3(BRCA2):c.7007G>A (p.Arg2336His)" ; + skos:example "ClinVar:38077" ] ; linkml:is_a ; linkml:is_usage_slot true ; linkml:local_names [ linkml:ga4gh [ skos:altLabel "annotation subject" ; @@ -9754,11 +9754,11 @@ skos:inScheme ; skos:relatedMatch ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:increases abundance of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -9807,11 +9807,11 @@ , ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:increases activity of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -9919,11 +9919,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:increases metabolic processing of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10136,11 +10136,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:increases synthesis of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:increases synthesis of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10181,13 +10181,13 @@ skos:broadMatch ; skos:definition "holds between two chemical or gene/gene product entities where the action or effect of one decreases the rate of uptake of the other into of a cell, gland, or organ" ; skos:exactMatch ; - skos:inScheme ; - linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:increases uptake of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; + skos:inScheme ; + linkml:annotations [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:increases uptake of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10302,11 +10302,11 @@ skos:narrowMatch , ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:enables" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10337,11 +10337,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:prevents" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:prevents" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10375,11 +10375,11 @@ skos:narrowMatch , ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:entity positively regulates entity" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:entity positively regulates entity" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10423,11 +10423,11 @@ , ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:entity negatively regulates entity" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:entity negatively regulates entity" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10725,11 +10725,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:has not completed" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:has not completed" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10820,11 +10820,11 @@ skos:inScheme ; skos:narrowMatch ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:has decreased amount" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:has decreased amount" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -10968,11 +10968,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:has completed" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:has completed" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11162,11 +11162,11 @@ skos:inScheme ; skos:relatedMatch ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases abundance of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11270,11 +11270,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases folding of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11292,11 +11292,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:decreases localization of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:decreases localization of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11316,11 +11316,11 @@ skos:inScheme ; skos:narrowMatch ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases metabolic processing of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11338,11 +11338,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:decreases molecular interaction" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:decreases molecular interaction" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11393,11 +11393,11 @@ , ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases molecular modification of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11417,11 +11417,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:decreases mutation rate of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:decreases mutation rate of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11463,11 +11463,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases secretion of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11487,11 +11487,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases splicing of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11509,11 +11509,11 @@ skos:definition "holds between two chemical or gene/gene product entities where the action or effect of one increases the stability of the other within a system of interest" ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "decreases stability of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "decreases stability of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11556,11 +11556,11 @@ skos:definition "holds between two chemical or gene/gene product entities where the action or effect of one increases the rate of transport of the other across some boundary in a system of interest" ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:decreases transport of" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -11580,11 +11580,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:decreases uptake of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:decreases uptake of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -12280,11 +12280,11 @@ , ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:preceded by" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:preceded by" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -12341,11 +12341,11 @@ skos:inScheme ; skos:narrowMatch ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:predisposes" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:predisposes" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -12407,11 +12407,11 @@ skos:exactMatch ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:process negatively regulates process" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -12805,11 +12805,11 @@ ; skos:inScheme ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:transcribed to" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -14102,11 +14102,11 @@ linkml:domain ; linkml:domain_of ; linkml:examples [ a linkml:Example ; - skos:definition "kinase activity" ; - skos:example "GO:0016301" ], - [ a linkml:Example ; skos:definition "postsynaptic membrane" ; - skos:example "GO:0045211" ] ; + skos:example "GO:0045211" ], + [ a linkml:Example ; + skos:definition "kinase activity" ; + skos:example "GO:0016301" ] ; linkml:inlined true ; linkml:is_a ; linkml:is_usage_slot true ; @@ -14722,11 +14722,11 @@ , rdfs:subPropertyOf ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:superclass of" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:superclass of" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -14837,11 +14837,11 @@ ; skos:relatedMatch ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:contraindicated for" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -15502,11 +15502,11 @@ , ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:prevents" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:prevents" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -17573,11 +17573,11 @@ , ; linkml:annotations [ a linkml:Annotation ; - skos:example "True" ; - linkml:tag ns1:canonical_predicate ], - [ a linkml:Annotation ; skos:example "biolink:lacks part" ; - linkml:tag ns1:opposite_of ] ; + linkml:tag ns1:opposite_of ], + [ a linkml:Annotation ; + skos:example "True" ; + linkml:tag ns1:canonical_predicate ] ; linkml:definition_uri ; linkml:domain ; linkml:inherited true ; @@ -19042,11 +19042,11 @@ In an RDF database, nodes will typically have an rdf:type triples. This can be t , ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:has input" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:has input" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:domain_of ; @@ -19269,11 +19269,11 @@ In an RDF database, nodes will typically have an rdf:type triples. This can be t , ; linkml:annotations [ a linkml:Annotation ; - skos:example "biolink:has output" ; - linkml:tag ns1:opposite_of ], - [ a linkml:Annotation ; skos:example "True" ; - linkml:tag ns1:canonical_predicate ] ; + linkml:tag ns1:canonical_predicate ], + [ a linkml:Annotation ; + skos:example "biolink:has output" ; + linkml:tag ns1:opposite_of ] ; linkml:definition_uri ; linkml:domain ; linkml:domain_of ; @@ -20453,11 +20453,11 @@ In an RDF database, nodes will typically have an rdf:type triples. This can be t skos:inScheme ; skos:note "This class is for modeling the specific state at a locus. A single DBSNP rs ID could correspond to more than one sequence variants (e.g CIViC:1252 and CIViC:1253, two distinct BRCA2 alleles for rs28897743)" ; linkml:alt_descriptions [ a linkml:AltDescription ; - skos:definition "An entity that describes a single affected, endogenous allele. These can be of any type that matches that definition" ; - linkml:source "AGR" ], - [ a linkml:AltDescription ; skos:definition "A contiguous change at a Location" ; - linkml:source "VMC" ] ; + linkml:source "VMC" ], + [ a linkml:AltDescription ; + skos:definition "An entity that describes a single affected, endogenous allele. These can be of any type that matches that definition" ; + linkml:source "AGR" ] ; linkml:class_uri ; linkml:definition_uri ; linkml:id_prefixes "CAID", @@ -20881,11 +20881,11 @@ In an RDF database, nodes will typically have an rdf:type triples. This can be t linkml:domain_of ; linkml:is_a ; linkml:local_names [ a linkml:LocalName ; - skos:altLabel "predicate" ; - linkml:local_name_source "translator" ], - [ a linkml:LocalName ; skos:altLabel "annotation predicate" ; - linkml:local_name_source "ga4gh" ] ; + linkml:local_name_source "ga4gh" ], + [ a linkml:LocalName ; + skos:altLabel "predicate" ; + linkml:local_name_source "translator" ] ; linkml:owner ; linkml:range ; linkml:required true ; diff --git a/biolink-modeln.shex b/biolink-modeln.shex index c632a49df6..123b2f5d64 100644 --- a/biolink-modeln.shex +++ b/biolink-modeln.shex @@ -1,5 +1,5 @@ # metamodel_version: 1.7.0 -# version: 2.4.4 +# version: 2.4.5 BASE PREFIX rdf: PREFIX xsd: diff --git a/biolink-modeln.shexj b/biolink-modeln.shexj index 8bc36eb5e9..3def86173b 100644 --- a/biolink-modeln.shexj +++ b/biolink-modeln.shexj @@ -1,5 +1,5 @@ # metamodel_version: 1.7.0 -# version: 2.4.4 +# version: 2.4.5 { "type": "Schema", "@context": [ diff --git a/biolink/model.py b/biolink/model.py index 1f200078e6..b4dadba386 100644 --- a/biolink/model.py +++ b/biolink/model.py @@ -1,5 +1,5 @@ # Auto generated from biolink-model.yaml by pythongen.py version: 0.9.0 -# Generation date: 2022-07-08T22:39:50 +# Generation date: 2022-07-08T23:18:02 # Schema: Biolink-Model # # id: https://w3id.org/biolink/biolink-model @@ -26,7 +26,7 @@ from linkml_runtime.utils.metamodelcore import Bool, URIorCURIE, XSDDate, XSDTime metamodel_version = "1.7.0" -version = "2.4.4" +version = "2.4.5" # Overwrite dataclasses _init_fn to add **kwargs in __init__ dataclasses._init_fn = dataclasses_init_fn_with_kwargs diff --git a/context.jsonld b/context.jsonld index 9bb3115863..3bd2ef9c5e 100644 --- a/context.jsonld +++ b/context.jsonld @@ -1,5 +1,5 @@ { - "_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2022-07-08T22:39:16\n Schema: Biolink-Model\n metamodel version: 1.7.0\n model version: 2.4.4\n \n id: https://w3id.org/biolink/biolink-model\n description: Entity and association taxonomy and datamodel for life-sciences data\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ", + "_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2022-07-08T23:17:31\n Schema: Biolink-Model\n metamodel version: 1.7.0\n model version: 2.4.5\n \n id: https://w3id.org/biolink/biolink-model\n description: Entity and association taxonomy and datamodel for life-sciences data\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ", "@context": { "APO": { "@id": "http://purl.obolibrary.org/obo/APO_", diff --git a/contextn.jsonld b/contextn.jsonld index 082d2a7b39..062712f6f9 100644 --- a/contextn.jsonld +++ b/contextn.jsonld @@ -1,5 +1,5 @@ { - "_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2022-07-08T22:39:20\n Schema: Biolink-Model\n metamodel version: 1.7.0\n model version: 2.4.4\n \n id: https://w3id.org/biolink/biolink-model\n description: Entity and association taxonomy and datamodel for life-sciences data\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ", + "_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2022-07-08T23:17:35\n Schema: Biolink-Model\n metamodel version: 1.7.0\n model version: 2.4.5\n \n id: https://w3id.org/biolink/biolink-model\n description: Entity and association taxonomy and datamodel for life-sciences data\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ", "@context": { "APO": { "@id": "http://purl.obolibrary.org/obo/APO_", diff --git a/golr-views/RNA_product_config.yaml b/golr-views/RNA_product_config.yaml index 5e14b62f14..757bb996b2 100644 --- a/golr-views/RNA_product_config.yaml +++ b/golr-views/RNA_product_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: RNA_product +# metamodel_version: 1.7.0# version: 2.4.5id: RNA_product schema_generating: true display_name: RNA product document_category: RNA product diff --git a/golr-views/RNA_product_isoform_config.yaml b/golr-views/RNA_product_isoform_config.yaml index 8608a5506e..a4b65e2cb4 100644 --- a/golr-views/RNA_product_isoform_config.yaml +++ b/golr-views/RNA_product_isoform_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: RNA_product_isoform +# metamodel_version: 1.7.0# version: 2.4.5id: RNA_product_isoform schema_generating: true description: Represents a protein that is a specific isoform of the canonical or reference RNA diff --git a/golr-views/activity_config.yaml b/golr-views/activity_config.yaml index a4079f8a27..8d52683802 100644 --- a/golr-views/activity_config.yaml +++ b/golr-views/activity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: activity +# metamodel_version: 1.7.0# version: 2.4.5id: activity schema_generating: true description: An activity is something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, diff --git a/golr-views/agent_config.yaml b/golr-views/agent_config.yaml index 1a92bd9b3b..9a5f68466e 100644 --- a/golr-views/agent_config.yaml +++ b/golr-views/agent_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: agent +# metamodel_version: 1.7.0# version: 2.4.5id: agent schema_generating: true description: person, group, organization or project that provides a piece of information (i.e. a knowledge association) diff --git a/golr-views/anatomical_entity_config.yaml b/golr-views/anatomical_entity_config.yaml index 816277ad46..2fdec16154 100644 --- a/golr-views/anatomical_entity_config.yaml +++ b/golr-views/anatomical_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: anatomical_entity +# metamodel_version: 1.7.0# version: 2.4.5id: anatomical_entity schema_generating: true description: A subcellular location, cell type or gross anatomical part display_name: anatomical entity diff --git a/golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association_config.yaml b/golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association_config.yaml index ae073dfdf5..9ab93f654b 100644 --- a/golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association_config.yaml +++ b/golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: anatomical_entity_to_anatomical_entity_ontogenic_association +# metamodel_version: 1.7.0# version: 2.4.5id: anatomical_entity_to_anatomical_entity_ontogenic_association schema_generating: true description: A relationship between two anatomical entities where the relationship is ontogenic, i.e. the two entities are related by development. A number of different diff --git a/golr-views/anatomical_entity_to_anatomical_entity_part_of_association_config.yaml b/golr-views/anatomical_entity_to_anatomical_entity_part_of_association_config.yaml index 6ea59f1bae..20f9f9c3ca 100644 --- a/golr-views/anatomical_entity_to_anatomical_entity_part_of_association_config.yaml +++ b/golr-views/anatomical_entity_to_anatomical_entity_part_of_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: anatomical_entity_to_anatomical_entity_part_of_association +# metamodel_version: 1.7.0# version: 2.4.5id: anatomical_entity_to_anatomical_entity_part_of_association schema_generating: true description: A relationship between two anatomical entities where the relationship is mereological, i.e the two entities are related by parthood. This includes relationships diff --git a/golr-views/article_config.yaml b/golr-views/article_config.yaml index 181260afd2..548dd1e86f 100644 --- a/golr-views/article_config.yaml +++ b/golr-views/article_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: article +# metamodel_version: 1.7.0# version: 2.4.5id: article schema_generating: true display_name: article document_category: article diff --git a/golr-views/association_config.yaml b/golr-views/association_config.yaml index ecf3cba7e1..2f10230ac2 100644 --- a/golr-views/association_config.yaml +++ b/golr-views/association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: association +# metamodel_version: 1.7.0# version: 2.4.5id: association schema_generating: true description: A typed association between two entities, supported by evidence display_name: association diff --git a/golr-views/attribute_config.yaml b/golr-views/attribute_config.yaml index 86a653a21d..c3540af8c5 100644 --- a/golr-views/attribute_config.yaml +++ b/golr-views/attribute_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: attribute +# metamodel_version: 1.7.0# version: 2.4.5id: attribute schema_generating: true description: A property or characteristic of an entity. For example, an apple may have properties such as color, shape, age, crispiness. An environmental sample may diff --git a/golr-views/behavior_config.yaml b/golr-views/behavior_config.yaml index 6f404df27b..15f3cc703c 100644 --- a/golr-views/behavior_config.yaml +++ b/golr-views/behavior_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: behavior +# metamodel_version: 1.7.0# version: 2.4.5id: behavior schema_generating: true display_name: behavior document_category: behavior diff --git a/golr-views/behavior_to_behavioral_feature_association_config.yaml b/golr-views/behavior_to_behavioral_feature_association_config.yaml index 29965c2c57..6a5ae1a455 100644 --- a/golr-views/behavior_to_behavioral_feature_association_config.yaml +++ b/golr-views/behavior_to_behavioral_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: behavior_to_behavioral_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: behavior_to_behavioral_feature_association schema_generating: true description: An association between an mixture behavior and a behavioral feature manifested by the individual exhibited or has exhibited the behavior. diff --git a/golr-views/behavioral_exposure_config.yaml b/golr-views/behavioral_exposure_config.yaml index e57b78292f..59f5ddf4ef 100644 --- a/golr-views/behavioral_exposure_config.yaml +++ b/golr-views/behavioral_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: behavioral_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: behavioral_exposure schema_generating: true description: A behavioral exposure is a factor relating to behavior impacting an individual. display_name: behavioral exposure diff --git a/golr-views/behavioral_feature_config.yaml b/golr-views/behavioral_feature_config.yaml index 2bb61d68e8..66a8b0ad45 100644 --- a/golr-views/behavioral_feature_config.yaml +++ b/golr-views/behavioral_feature_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: behavioral_feature +# metamodel_version: 1.7.0# version: 2.4.5id: behavioral_feature schema_generating: true description: A phenotypic feature which is behavioral in nature. display_name: behavioral feature diff --git a/golr-views/biological_process_config.yaml b/golr-views/biological_process_config.yaml index 27e23d8a19..2e03815c5f 100644 --- a/golr-views/biological_process_config.yaml +++ b/golr-views/biological_process_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: biological_process +# metamodel_version: 1.7.0# version: 2.4.5id: biological_process schema_generating: true description: One or more causally connected executions of molecular functions display_name: biological process diff --git a/golr-views/biological_process_or_activity_config.yaml b/golr-views/biological_process_or_activity_config.yaml index a679cd80fc..01d2a78aeb 100644 --- a/golr-views/biological_process_or_activity_config.yaml +++ b/golr-views/biological_process_or_activity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: biological_process_or_activity +# metamodel_version: 1.7.0# version: 2.4.5id: biological_process_or_activity schema_generating: true description: Either an individual molecular activity, or a collection of causally connected molecular activities in a biological system. diff --git a/golr-views/biological_sex_config.yaml b/golr-views/biological_sex_config.yaml index 2ac42579c1..a0e564ca98 100644 --- a/golr-views/biological_sex_config.yaml +++ b/golr-views/biological_sex_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: biological_sex +# metamodel_version: 1.7.0# version: 2.4.5id: biological_sex schema_generating: true display_name: biological sex document_category: biological sex diff --git a/golr-views/biotic_exposure_config.yaml b/golr-views/biotic_exposure_config.yaml index 8ac5ee25cd..881c595482 100644 --- a/golr-views/biotic_exposure_config.yaml +++ b/golr-views/biotic_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: biotic_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: biotic_exposure schema_generating: true description: An external biotic exposure is an intake of (sometimes pathological) biological organisms (including viruses). diff --git a/golr-views/book_chapter_config.yaml b/golr-views/book_chapter_config.yaml index 1af1cc8c14..92a24ab400 100644 --- a/golr-views/book_chapter_config.yaml +++ b/golr-views/book_chapter_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: book_chapter +# metamodel_version: 1.7.0# version: 2.4.5id: book_chapter schema_generating: true display_name: book chapter document_category: book chapter diff --git a/golr-views/book_config.yaml b/golr-views/book_config.yaml index 239f56fe33..898aed522c 100644 --- a/golr-views/book_config.yaml +++ b/golr-views/book_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: book +# metamodel_version: 1.7.0# version: 2.4.5id: book schema_generating: true description: This class may rarely be instantiated except if use cases of a given knowledge graph support its utility. diff --git a/golr-views/case_config.yaml b/golr-views/case_config.yaml index 06ac293045..ed0c94033c 100644 --- a/golr-views/case_config.yaml +++ b/golr-views/case_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: case +# metamodel_version: 1.7.0# version: 2.4.5id: case schema_generating: true description: An individual (human) organism that has a patient role in some clinical context. diff --git a/golr-views/case_to_phenotypic_feature_association_config.yaml b/golr-views/case_to_phenotypic_feature_association_config.yaml index f61c927bba..16e7356942 100644 --- a/golr-views/case_to_phenotypic_feature_association_config.yaml +++ b/golr-views/case_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: case_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: case_to_phenotypic_feature_association schema_generating: true description: An association between a case (e.g. individual patient) and a phenotypic feature in which the individual has or has had the phenotype. diff --git a/golr-views/cell_config.yaml b/golr-views/cell_config.yaml index 863a78535d..405669279b 100644 --- a/golr-views/cell_config.yaml +++ b/golr-views/cell_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: cell +# metamodel_version: 1.7.0# version: 2.4.5id: cell schema_generating: true display_name: cell document_category: cell diff --git a/golr-views/cell_line_as_a_model_of_disease_association_config.yaml b/golr-views/cell_line_as_a_model_of_disease_association_config.yaml index 954d6abda7..d28322730c 100644 --- a/golr-views/cell_line_as_a_model_of_disease_association_config.yaml +++ b/golr-views/cell_line_as_a_model_of_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: cell_line_as_a_model_of_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: cell_line_as_a_model_of_disease_association schema_generating: true display_name: cell line as a model of disease association document_category: cell line as a model of disease association diff --git a/golr-views/cell_line_config.yaml b/golr-views/cell_line_config.yaml index 88268ee605..06047941bf 100644 --- a/golr-views/cell_line_config.yaml +++ b/golr-views/cell_line_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: cell_line +# metamodel_version: 1.7.0# version: 2.4.5id: cell_line schema_generating: true display_name: cell line document_category: cell line diff --git a/golr-views/cell_line_to_disease_or_phenotypic_feature_association_config.yaml b/golr-views/cell_line_to_disease_or_phenotypic_feature_association_config.yaml index cfd792a7f2..e1cbaf266f 100644 --- a/golr-views/cell_line_to_disease_or_phenotypic_feature_association_config.yaml +++ b/golr-views/cell_line_to_disease_or_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: cell_line_to_disease_or_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: cell_line_to_disease_or_phenotypic_feature_association schema_generating: true description: An relationship between a cell line and a disease or a phenotype, where the cell line is derived from an individual with that disease or phenotype. diff --git a/golr-views/cellular_component_config.yaml b/golr-views/cellular_component_config.yaml index 02ba099a3d..cca1fafa8d 100644 --- a/golr-views/cellular_component_config.yaml +++ b/golr-views/cellular_component_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: cellular_component +# metamodel_version: 1.7.0# version: 2.4.5id: cellular_component schema_generating: true description: A location in or around a cell display_name: cellular component diff --git a/golr-views/chemical_entity_assesses_named_thing_association_config.yaml b/golr-views/chemical_entity_assesses_named_thing_association_config.yaml index 9b806e441f..fb7e46962b 100644 --- a/golr-views/chemical_entity_assesses_named_thing_association_config.yaml +++ b/golr-views/chemical_entity_assesses_named_thing_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_entity_assesses_named_thing_association +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_entity_assesses_named_thing_association schema_generating: true display_name: chemical entity assesses named thing association document_category: chemical entity assesses named thing association diff --git a/golr-views/chemical_entity_config.yaml b/golr-views/chemical_entity_config.yaml index 43b5894030..efc4306b9a 100644 --- a/golr-views/chemical_entity_config.yaml +++ b/golr-views/chemical_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_entity +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_entity schema_generating: true description: A chemical entity is a physical entity that pertains to chemistry or biochemistry. diff --git a/golr-views/chemical_exposure_config.yaml b/golr-views/chemical_exposure_config.yaml index 83f5be5fe2..2e21b81a6c 100644 --- a/golr-views/chemical_exposure_config.yaml +++ b/golr-views/chemical_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_exposure schema_generating: true description: A chemical exposure is an intake of a particular chemical entity. display_name: chemical exposure diff --git a/golr-views/chemical_mixture_config.yaml b/golr-views/chemical_mixture_config.yaml index 658db45fcc..a6aa1aada7 100644 --- a/golr-views/chemical_mixture_config.yaml +++ b/golr-views/chemical_mixture_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_mixture +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_mixture schema_generating: true description: A chemical mixture is a chemical entity composed of two or more molecular entities. diff --git a/golr-views/chemical_role_config.yaml b/golr-views/chemical_role_config.yaml index 329f009bba..a167bcf1d2 100644 --- a/golr-views/chemical_role_config.yaml +++ b/golr-views/chemical_role_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_role +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_role schema_generating: true display_name: chemical role document_category: chemical role diff --git a/golr-views/chemical_to_chemical_association_config.yaml b/golr-views/chemical_to_chemical_association_config.yaml index c0b31749df..5337934fc2 100644 --- a/golr-views/chemical_to_chemical_association_config.yaml +++ b/golr-views/chemical_to_chemical_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_to_chemical_association +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_to_chemical_association schema_generating: true description: A relationship between two chemical entities. This can encompass actual interactions as well as temporal causal edges, e.g. one chemical converted to another. diff --git a/golr-views/chemical_to_chemical_derivation_association_config.yaml b/golr-views/chemical_to_chemical_derivation_association_config.yaml index 3e96166ab5..a11002aa71 100644 --- a/golr-views/chemical_to_chemical_derivation_association_config.yaml +++ b/golr-views/chemical_to_chemical_derivation_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_to_chemical_derivation_association +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_to_chemical_derivation_association schema_generating: true description: "A causal relationship between two chemical entities, where the subject\ \ represents the upstream entity and the object represents the downstream. For any\ diff --git a/golr-views/chemical_to_disease_or_phenotypic_feature_association_config.yaml b/golr-views/chemical_to_disease_or_phenotypic_feature_association_config.yaml index 6f685f9277..f78b9bed1e 100644 --- a/golr-views/chemical_to_disease_or_phenotypic_feature_association_config.yaml +++ b/golr-views/chemical_to_disease_or_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_to_disease_or_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_to_disease_or_phenotypic_feature_association schema_generating: true description: An interaction between a chemical entity and a phenotype or disease, where the presence of the chemical gives rise to or exacerbates the phenotype. diff --git a/golr-views/chemical_to_gene_association_config.yaml b/golr-views/chemical_to_gene_association_config.yaml index 2b09c4c23c..620a92299b 100644 --- a/golr-views/chemical_to_gene_association_config.yaml +++ b/golr-views/chemical_to_gene_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_to_gene_association +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_to_gene_association schema_generating: true description: An interaction between a chemical entity and a gene or gene product. display_name: chemical to gene association diff --git a/golr-views/chemical_to_pathway_association_config.yaml b/golr-views/chemical_to_pathway_association_config.yaml index 61f67198aa..15e4383f1f 100644 --- a/golr-views/chemical_to_pathway_association_config.yaml +++ b/golr-views/chemical_to_pathway_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: chemical_to_pathway_association +# metamodel_version: 1.7.0# version: 2.4.5id: chemical_to_pathway_association schema_generating: true description: An interaction between a chemical entity and a biological process or pathway. diff --git a/golr-views/clinical_attribute_config.yaml b/golr-views/clinical_attribute_config.yaml index d458e27aff..01edc87a4b 100644 --- a/golr-views/clinical_attribute_config.yaml +++ b/golr-views/clinical_attribute_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_attribute +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_attribute schema_generating: true description: Attributes relating to a clinical manifestation display_name: clinical attribute diff --git a/golr-views/clinical_course_config.yaml b/golr-views/clinical_course_config.yaml index a3f36c8b65..375e2488fe 100644 --- a/golr-views/clinical_course_config.yaml +++ b/golr-views/clinical_course_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_course +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_course schema_generating: true description: The course a disease typically takes from its onset, progression in time, and eventual resolution or death of the affected individual diff --git a/golr-views/clinical_entity_config.yaml b/golr-views/clinical_entity_config.yaml index 0808fd7176..dad915820e 100644 --- a/golr-views/clinical_entity_config.yaml +++ b/golr-views/clinical_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_entity +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_entity schema_generating: true description: Any entity or process that exists in the clinical domain and outside the biological realm. Diseases are placed under biological entities diff --git a/golr-views/clinical_finding_config.yaml b/golr-views/clinical_finding_config.yaml index da964299a7..c52f6f2c3c 100644 --- a/golr-views/clinical_finding_config.yaml +++ b/golr-views/clinical_finding_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_finding +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_finding schema_generating: true description: this category is currently considered broad enough to tag clinical lab measurements and other biological attributes taken as 'clinical traits' with some diff --git a/golr-views/clinical_intervention_config.yaml b/golr-views/clinical_intervention_config.yaml index e863117224..3224983e68 100644 --- a/golr-views/clinical_intervention_config.yaml +++ b/golr-views/clinical_intervention_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_intervention +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_intervention schema_generating: true display_name: clinical intervention document_category: clinical intervention diff --git a/golr-views/clinical_measurement_config.yaml b/golr-views/clinical_measurement_config.yaml index f97e51a034..485b1dc3f0 100644 --- a/golr-views/clinical_measurement_config.yaml +++ b/golr-views/clinical_measurement_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_measurement +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_measurement schema_generating: true description: A clinical measurement is a special kind of attribute which results from a laboratory observation from a subject individual or sample. Measurements can be diff --git a/golr-views/clinical_modifier_config.yaml b/golr-views/clinical_modifier_config.yaml index c9fe75d68f..3b6d3982dc 100644 --- a/golr-views/clinical_modifier_config.yaml +++ b/golr-views/clinical_modifier_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_modifier +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_modifier schema_generating: true description: Used to characterize and specify the phenotypic abnormalities defined in the phenotypic abnormality sub-ontology, with respect to severity, laterality, diff --git a/golr-views/clinical_trial_config.yaml b/golr-views/clinical_trial_config.yaml index 9a8af387d0..c2a0037f65 100644 --- a/golr-views/clinical_trial_config.yaml +++ b/golr-views/clinical_trial_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: clinical_trial +# metamodel_version: 1.7.0# version: 2.4.5id: clinical_trial schema_generating: true display_name: clinical trial document_category: clinical trial diff --git a/golr-views/coding_sequence_config.yaml b/golr-views/coding_sequence_config.yaml index 1cfd18bfda..d4443cd858 100644 --- a/golr-views/coding_sequence_config.yaml +++ b/golr-views/coding_sequence_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: coding_sequence +# metamodel_version: 1.7.0# version: 2.4.5id: coding_sequence schema_generating: true display_name: coding sequence document_category: coding sequence diff --git a/golr-views/cohort_config.yaml b/golr-views/cohort_config.yaml index 81181392e9..7421e94e08 100644 --- a/golr-views/cohort_config.yaml +++ b/golr-views/cohort_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: cohort +# metamodel_version: 1.7.0# version: 2.4.5id: cohort schema_generating: true description: A group of people banded together or treated as a group who share common characteristics. A cohort 'study' is a particular form of longitudinal study that diff --git a/golr-views/complex_chemical_exposure_config.yaml b/golr-views/complex_chemical_exposure_config.yaml index 762ced301b..0fb858ba54 100644 --- a/golr-views/complex_chemical_exposure_config.yaml +++ b/golr-views/complex_chemical_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: complex_chemical_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: complex_chemical_exposure schema_generating: true description: A complex chemical exposure is an intake of a chemical mixture (e.g. gasoline), other than a drug. diff --git a/golr-views/complex_molecular_mixture_config.yaml b/golr-views/complex_molecular_mixture_config.yaml index 6569fbd1c8..08c9c9c649 100644 --- a/golr-views/complex_molecular_mixture_config.yaml +++ b/golr-views/complex_molecular_mixture_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: complex_molecular_mixture +# metamodel_version: 1.7.0# version: 2.4.5id: complex_molecular_mixture schema_generating: true description: A complex molecular mixture is a chemical mixture composed of two or more molecular entities with unknown concentration and stoichiometry. diff --git a/golr-views/confidence_level_config.yaml b/golr-views/confidence_level_config.yaml index 4aaa809ba1..4683d06f1c 100644 --- a/golr-views/confidence_level_config.yaml +++ b/golr-views/confidence_level_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: confidence_level +# metamodel_version: 1.7.0# version: 2.4.5id: confidence_level schema_generating: true description: Level of confidence in a statement display_name: confidence level diff --git a/golr-views/contributor_association_config.yaml b/golr-views/contributor_association_config.yaml index 3f97e268d8..118c864512 100644 --- a/golr-views/contributor_association_config.yaml +++ b/golr-views/contributor_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: contributor_association +# metamodel_version: 1.7.0# version: 2.4.5id: contributor_association schema_generating: true description: Any association between an entity (such as a publication) and various agents that contribute to its realisation diff --git a/golr-views/dataset_config.yaml b/golr-views/dataset_config.yaml index 2b3c6417b7..1e052fe8eb 100644 --- a/golr-views/dataset_config.yaml +++ b/golr-views/dataset_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: dataset +# metamodel_version: 1.7.0# version: 2.4.5id: dataset schema_generating: true description: an item that refers to a collection of data from a data source. display_name: dataset diff --git a/golr-views/dataset_distribution_config.yaml b/golr-views/dataset_distribution_config.yaml index 3b3bacce76..4f567aec71 100644 --- a/golr-views/dataset_distribution_config.yaml +++ b/golr-views/dataset_distribution_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: dataset_distribution +# metamodel_version: 1.7.0# version: 2.4.5id: dataset_distribution schema_generating: true description: an item that holds distribution level information about a dataset. display_name: dataset distribution diff --git a/golr-views/dataset_summary_config.yaml b/golr-views/dataset_summary_config.yaml index f792aa1f4f..a0deea2dd2 100644 --- a/golr-views/dataset_summary_config.yaml +++ b/golr-views/dataset_summary_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: dataset_summary +# metamodel_version: 1.7.0# version: 2.4.5id: dataset_summary schema_generating: true description: an item that holds summary level information about a dataset. display_name: dataset summary diff --git a/golr-views/dataset_version_config.yaml b/golr-views/dataset_version_config.yaml index f2114bd246..2748bc15e0 100644 --- a/golr-views/dataset_version_config.yaml +++ b/golr-views/dataset_version_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: dataset_version +# metamodel_version: 1.7.0# version: 2.4.5id: dataset_version schema_generating: true description: an item that holds version level information about a dataset. display_name: dataset version diff --git a/golr-views/device_config.yaml b/golr-views/device_config.yaml index 8c03664a15..d54d8a165c 100644 --- a/golr-views/device_config.yaml +++ b/golr-views/device_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: device +# metamodel_version: 1.7.0# version: 2.4.5id: device schema_generating: true description: A thing made or adapted for a particular purpose, especially a piece of mechanical or electronic equipment diff --git a/golr-views/disease_config.yaml b/golr-views/disease_config.yaml index 97739e4023..dad6141b53 100644 --- a/golr-views/disease_config.yaml +++ b/golr-views/disease_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: disease +# metamodel_version: 1.7.0# version: 2.4.5id: disease schema_generating: true display_name: disease document_category: disease diff --git a/golr-views/disease_or_phenotypic_feature_config.yaml b/golr-views/disease_or_phenotypic_feature_config.yaml index 50c78d8b23..d63fdf39b8 100644 --- a/golr-views/disease_or_phenotypic_feature_config.yaml +++ b/golr-views/disease_or_phenotypic_feature_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: disease_or_phenotypic_feature +# metamodel_version: 1.7.0# version: 2.4.5id: disease_or_phenotypic_feature schema_generating: true description: Either one of a disease or an individual phenotypic feature. Some knowledge resources such as Monarch treat these as distinct, others such as MESH conflate. diff --git a/golr-views/disease_or_phenotypic_feature_exposure_config.yaml b/golr-views/disease_or_phenotypic_feature_exposure_config.yaml index e7cf6644d2..27781bd5b9 100644 --- a/golr-views/disease_or_phenotypic_feature_exposure_config.yaml +++ b/golr-views/disease_or_phenotypic_feature_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: disease_or_phenotypic_feature_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: disease_or_phenotypic_feature_exposure schema_generating: true description: A disease or phenotypic feature state, when viewed as an exposure, represents an precondition, leading to or influencing an outcome, e.g. HIV predisposing an diff --git a/golr-views/disease_or_phenotypic_feature_to_location_association_config.yaml b/golr-views/disease_or_phenotypic_feature_to_location_association_config.yaml index 15d7eac116..c2d91683cc 100644 --- a/golr-views/disease_or_phenotypic_feature_to_location_association_config.yaml +++ b/golr-views/disease_or_phenotypic_feature_to_location_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: disease_or_phenotypic_feature_to_location_association +# metamodel_version: 1.7.0# version: 2.4.5id: disease_or_phenotypic_feature_to_location_association schema_generating: true description: An association between either a disease or a phenotypic feature and an anatomical entity, where the disease/feature manifests in that site. diff --git a/golr-views/disease_to_exposure_event_association_config.yaml b/golr-views/disease_to_exposure_event_association_config.yaml index 2df6141c88..11db710625 100644 --- a/golr-views/disease_to_exposure_event_association_config.yaml +++ b/golr-views/disease_to_exposure_event_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: disease_to_exposure_event_association +# metamodel_version: 1.7.0# version: 2.4.5id: disease_to_exposure_event_association schema_generating: true description: An association between an exposure event and a disease. display_name: disease to exposure event association diff --git a/golr-views/disease_to_phenotypic_feature_association_config.yaml b/golr-views/disease_to_phenotypic_feature_association_config.yaml index f38f8dc52e..74e02ca556 100644 --- a/golr-views/disease_to_phenotypic_feature_association_config.yaml +++ b/golr-views/disease_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: disease_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: disease_to_phenotypic_feature_association schema_generating: true description: An association between a disease and a phenotypic feature in which the phenotypic feature is associated with the disease in some way. diff --git a/golr-views/drug_config.yaml b/golr-views/drug_config.yaml index 4bffdf2076..64c76eea5e 100644 --- a/golr-views/drug_config.yaml +++ b/golr-views/drug_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: drug +# metamodel_version: 1.7.0# version: 2.4.5id: drug schema_generating: true description: A substance intended for use in the diagnosis, cure, mitigation, treatment, or prevention of disease diff --git a/golr-views/drug_exposure_config.yaml b/golr-views/drug_exposure_config.yaml index 4005e3d1d8..0f52e26966 100644 --- a/golr-views/drug_exposure_config.yaml +++ b/golr-views/drug_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: drug_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: drug_exposure schema_generating: true description: A drug exposure is an intake of a particular drug. display_name: drug exposure diff --git a/golr-views/drug_to_gene_association_config.yaml b/golr-views/drug_to_gene_association_config.yaml index d7c4ec6539..705968396a 100644 --- a/golr-views/drug_to_gene_association_config.yaml +++ b/golr-views/drug_to_gene_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: drug_to_gene_association +# metamodel_version: 1.7.0# version: 2.4.5id: drug_to_gene_association schema_generating: true description: An interaction between a drug and a gene or gene product. display_name: drug to gene association diff --git a/golr-views/drug_to_gene_interaction_exposure_config.yaml b/golr-views/drug_to_gene_interaction_exposure_config.yaml index e527054363..38b0ba23c5 100644 --- a/golr-views/drug_to_gene_interaction_exposure_config.yaml +++ b/golr-views/drug_to_gene_interaction_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: drug_to_gene_interaction_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: drug_to_gene_interaction_exposure schema_generating: true description: drug to gene interaction exposure is a drug exposure is where the interactions of the drug with specific genes are known to constitute an 'exposure' to the organism, diff --git a/golr-views/druggable_gene_to_disease_association_config.yaml b/golr-views/druggable_gene_to_disease_association_config.yaml index fa1b2086cc..c4c90e84fe 100644 --- a/golr-views/druggable_gene_to_disease_association_config.yaml +++ b/golr-views/druggable_gene_to_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: druggable_gene_to_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: druggable_gene_to_disease_association schema_generating: true display_name: druggable gene to disease association document_category: druggable gene to disease association diff --git a/golr-views/entity_to_disease_association_config.yaml b/golr-views/entity_to_disease_association_config.yaml index f6f048ab4a..1960f61e1f 100644 --- a/golr-views/entity_to_disease_association_config.yaml +++ b/golr-views/entity_to_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: entity_to_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: entity_to_disease_association schema_generating: true display_name: entity to disease association document_category: entity to disease association diff --git a/golr-views/entity_to_phenotypic_feature_association_config.yaml b/golr-views/entity_to_phenotypic_feature_association_config.yaml index c4c2d113d9..f1378f7dfb 100644 --- a/golr-views/entity_to_phenotypic_feature_association_config.yaml +++ b/golr-views/entity_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: entity_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: entity_to_phenotypic_feature_association schema_generating: true display_name: entity to phenotypic feature association document_category: entity to phenotypic feature association diff --git a/golr-views/environmental_exposure_config.yaml b/golr-views/environmental_exposure_config.yaml index 8187133dcf..f5a8b007a2 100644 --- a/golr-views/environmental_exposure_config.yaml +++ b/golr-views/environmental_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: environmental_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: environmental_exposure schema_generating: true description: A environmental exposure is a factor relating to abiotic processes in the environment including sunlight (UV-B), atmospheric (heat, cold, general pollution) diff --git a/golr-views/environmental_feature_config.yaml b/golr-views/environmental_feature_config.yaml index dbc8834211..cbfa39de32 100644 --- a/golr-views/environmental_feature_config.yaml +++ b/golr-views/environmental_feature_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: environmental_feature +# metamodel_version: 1.7.0# version: 2.4.5id: environmental_feature schema_generating: true display_name: environmental feature document_category: environmental feature diff --git a/golr-views/environmental_food_contaminant_config.yaml b/golr-views/environmental_food_contaminant_config.yaml index ff3e037590..886095195d 100644 --- a/golr-views/environmental_food_contaminant_config.yaml +++ b/golr-views/environmental_food_contaminant_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: environmental_food_contaminant +# metamodel_version: 1.7.0# version: 2.4.5id: environmental_food_contaminant schema_generating: true display_name: environmental food contaminant document_category: environmental food contaminant diff --git a/golr-views/environmental_process_config.yaml b/golr-views/environmental_process_config.yaml index ad94a8ac9b..d5eea49c0e 100644 --- a/golr-views/environmental_process_config.yaml +++ b/golr-views/environmental_process_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: environmental_process +# metamodel_version: 1.7.0# version: 2.4.5id: environmental_process schema_generating: true display_name: environmental process document_category: environmental process diff --git a/golr-views/event_config.yaml b/golr-views/event_config.yaml index 5b8af87e90..8f0e146bea 100644 --- a/golr-views/event_config.yaml +++ b/golr-views/event_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: event +# metamodel_version: 1.7.0# version: 2.4.5id: event schema_generating: true description: Something that happens at a given place and time. display_name: event diff --git a/golr-views/evidence_type_config.yaml b/golr-views/evidence_type_config.yaml index f49f116319..57cf2c63af 100644 --- a/golr-views/evidence_type_config.yaml +++ b/golr-views/evidence_type_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: evidence_type +# metamodel_version: 1.7.0# version: 2.4.5id: evidence_type schema_generating: true description: Class of evidence that supports an association display_name: evidence type diff --git a/golr-views/exon_config.yaml b/golr-views/exon_config.yaml index 67ed634f4c..94f625f23f 100644 --- a/golr-views/exon_config.yaml +++ b/golr-views/exon_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: exon +# metamodel_version: 1.7.0# version: 2.4.5id: exon schema_generating: true description: A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing. diff --git a/golr-views/exon_to_transcript_relationship_config.yaml b/golr-views/exon_to_transcript_relationship_config.yaml index 7f42ddc265..92af1cdee4 100644 --- a/golr-views/exon_to_transcript_relationship_config.yaml +++ b/golr-views/exon_to_transcript_relationship_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: exon_to_transcript_relationship +# metamodel_version: 1.7.0# version: 2.4.5id: exon_to_transcript_relationship schema_generating: true description: A transcript is formed from multiple exons display_name: exon to transcript relationship diff --git a/golr-views/exposure_event_to_outcome_association_config.yaml b/golr-views/exposure_event_to_outcome_association_config.yaml index 1dc310a333..df4d671a36 100644 --- a/golr-views/exposure_event_to_outcome_association_config.yaml +++ b/golr-views/exposure_event_to_outcome_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: exposure_event_to_outcome_association +# metamodel_version: 1.7.0# version: 2.4.5id: exposure_event_to_outcome_association schema_generating: true description: An association between an exposure event and an outcome. display_name: exposure event to outcome association diff --git a/golr-views/exposure_event_to_phenotypic_feature_association_config.yaml b/golr-views/exposure_event_to_phenotypic_feature_association_config.yaml index 1373021fed..ecef43b87f 100644 --- a/golr-views/exposure_event_to_phenotypic_feature_association_config.yaml +++ b/golr-views/exposure_event_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: exposure_event_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: exposure_event_to_phenotypic_feature_association schema_generating: true description: Any association between an environment and a phenotypic feature, where being in the environment influences the phenotype. diff --git a/golr-views/food_additive_config.yaml b/golr-views/food_additive_config.yaml index c1c1ead2ff..a0fa921cdc 100644 --- a/golr-views/food_additive_config.yaml +++ b/golr-views/food_additive_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: food_additive +# metamodel_version: 1.7.0# version: 2.4.5id: food_additive schema_generating: true display_name: food additive document_category: food additive diff --git a/golr-views/food_config.yaml b/golr-views/food_config.yaml index 3c11eed42f..87f002d1de 100644 --- a/golr-views/food_config.yaml +++ b/golr-views/food_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: food +# metamodel_version: 1.7.0# version: 2.4.5id: food schema_generating: true description: A substance consumed by a living organism as a source of nutrition display_name: food diff --git a/golr-views/functional_association_config.yaml b/golr-views/functional_association_config.yaml index 07833490be..48d022959f 100644 --- a/golr-views/functional_association_config.yaml +++ b/golr-views/functional_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: functional_association +# metamodel_version: 1.7.0# version: 2.4.5id: functional_association schema_generating: true description: An association between a macromolecular machine mixin (gene, gene product or complex of gene products) and either a molecular activity, a biological process diff --git a/golr-views/gene_as_a_model_of_disease_association_config.yaml b/golr-views/gene_as_a_model_of_disease_association_config.yaml index 589f68e401..81cfa01964 100644 --- a/golr-views/gene_as_a_model_of_disease_association_config.yaml +++ b/golr-views/gene_as_a_model_of_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_as_a_model_of_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_as_a_model_of_disease_association schema_generating: true display_name: gene as a model of disease association document_category: gene as a model of disease association diff --git a/golr-views/gene_config.yaml b/golr-views/gene_config.yaml index c076687aa7..2842de3696 100644 --- a/golr-views/gene_config.yaml +++ b/golr-views/gene_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene +# metamodel_version: 1.7.0# version: 2.4.5id: gene schema_generating: true description: A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene locus may include regulatory regions, diff --git a/golr-views/gene_family_config.yaml b/golr-views/gene_family_config.yaml index 075a0a9193..bfd6c03c54 100644 --- a/golr-views/gene_family_config.yaml +++ b/golr-views/gene_family_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_family +# metamodel_version: 1.7.0# version: 2.4.5id: gene_family schema_generating: true description: any grouping of multiple genes or gene products related by common descent display_name: gene family diff --git a/golr-views/gene_has_variant_that_contributes_to_disease_association_config.yaml b/golr-views/gene_has_variant_that_contributes_to_disease_association_config.yaml index 7f5ae6cde0..c0354f7a58 100644 --- a/golr-views/gene_has_variant_that_contributes_to_disease_association_config.yaml +++ b/golr-views/gene_has_variant_that_contributes_to_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_has_variant_that_contributes_to_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_has_variant_that_contributes_to_disease_association schema_generating: true display_name: gene has variant that contributes to disease association document_category: gene has variant that contributes to disease association diff --git a/golr-views/gene_regulatory_relationship_config.yaml b/golr-views/gene_regulatory_relationship_config.yaml index d37c21691d..e03d3d41c5 100644 --- a/golr-views/gene_regulatory_relationship_config.yaml +++ b/golr-views/gene_regulatory_relationship_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_regulatory_relationship +# metamodel_version: 1.7.0# version: 2.4.5id: gene_regulatory_relationship schema_generating: true description: A regulatory relationship between two genes display_name: gene regulatory relationship diff --git a/golr-views/gene_to_disease_association_config.yaml b/golr-views/gene_to_disease_association_config.yaml index c43ec5b38c..0551f99af4 100644 --- a/golr-views/gene_to_disease_association_config.yaml +++ b/golr-views/gene_to_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_disease_association schema_generating: true display_name: gene to disease association document_category: gene to disease association diff --git a/golr-views/gene_to_expression_site_association_config.yaml b/golr-views/gene_to_expression_site_association_config.yaml index e9c7db6783..cdbd045d2f 100644 --- a/golr-views/gene_to_expression_site_association_config.yaml +++ b/golr-views/gene_to_expression_site_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_expression_site_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_expression_site_association schema_generating: true description: An association between a gene and a gene expression site, possibly qualified by stage/timing info. diff --git a/golr-views/gene_to_gene_coexpression_association_config.yaml b/golr-views/gene_to_gene_coexpression_association_config.yaml index 43ccecfebb..e3df25c5ad 100644 --- a/golr-views/gene_to_gene_coexpression_association_config.yaml +++ b/golr-views/gene_to_gene_coexpression_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_gene_coexpression_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_gene_coexpression_association schema_generating: true description: Indicates that two genes are co-expressed, generally under the same conditions. display_name: gene to gene coexpression association diff --git a/golr-views/gene_to_gene_homology_association_config.yaml b/golr-views/gene_to_gene_homology_association_config.yaml index 2407a9776f..313b0f2a14 100644 --- a/golr-views/gene_to_gene_homology_association_config.yaml +++ b/golr-views/gene_to_gene_homology_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_gene_homology_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_gene_homology_association schema_generating: true description: A homology association between two genes. May be orthology (in which case the species of subject and object should differ) or paralogy (in which case diff --git a/golr-views/gene_to_gene_product_relationship_config.yaml b/golr-views/gene_to_gene_product_relationship_config.yaml index 85f34e1ce3..94a2f7a628 100644 --- a/golr-views/gene_to_gene_product_relationship_config.yaml +++ b/golr-views/gene_to_gene_product_relationship_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_gene_product_relationship +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_gene_product_relationship schema_generating: true description: A gene is transcribed and potentially translated to a gene product display_name: gene to gene product relationship diff --git a/golr-views/gene_to_go_term_association_config.yaml b/golr-views/gene_to_go_term_association_config.yaml index 3863be2d8c..d1d545ec8f 100644 --- a/golr-views/gene_to_go_term_association_config.yaml +++ b/golr-views/gene_to_go_term_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_go_term_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_go_term_association schema_generating: true display_name: gene to go term association document_category: gene to go term association diff --git a/golr-views/gene_to_pathway_association_config.yaml b/golr-views/gene_to_pathway_association_config.yaml index e818ce3e2e..91c14511ad 100644 --- a/golr-views/gene_to_pathway_association_config.yaml +++ b/golr-views/gene_to_pathway_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_pathway_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_pathway_association schema_generating: true description: An interaction between a gene or gene product and a biological process or pathway. diff --git a/golr-views/gene_to_phenotypic_feature_association_config.yaml b/golr-views/gene_to_phenotypic_feature_association_config.yaml index bf68ef20c0..77ebd1a8d5 100644 --- a/golr-views/gene_to_phenotypic_feature_association_config.yaml +++ b/golr-views/gene_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gene_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: gene_to_phenotypic_feature_association schema_generating: true display_name: gene to phenotypic feature association document_category: gene to phenotypic feature association diff --git a/golr-views/genome_config.yaml b/golr-views/genome_config.yaml index a493161615..6837e16e15 100644 --- a/golr-views/genome_config.yaml +++ b/golr-views/genome_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genome +# metamodel_version: 1.7.0# version: 2.4.5id: genome schema_generating: true description: A genome is the sum of genetic material within a cell or virion. display_name: genome diff --git a/golr-views/genomic_background_exposure_config.yaml b/golr-views/genomic_background_exposure_config.yaml index 99f2277111..3f2bed2bff 100644 --- a/golr-views/genomic_background_exposure_config.yaml +++ b/golr-views/genomic_background_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genomic_background_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: genomic_background_exposure schema_generating: true description: A genomic background exposure is where an individual's specific genomic background of genes, sequence variants or other pre-existing genomic conditions diff --git a/golr-views/genomic_sequence_localization_config.yaml b/golr-views/genomic_sequence_localization_config.yaml index 696f3c4814..bdae34d542 100644 --- a/golr-views/genomic_sequence_localization_config.yaml +++ b/golr-views/genomic_sequence_localization_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genomic_sequence_localization +# metamodel_version: 1.7.0# version: 2.4.5id: genomic_sequence_localization schema_generating: true description: A relationship between a sequence feature and a nucleic acid entity it is localized to. The reference entity may be a chromosome, chromosome region or diff --git a/golr-views/genotype_as_a_model_of_disease_association_config.yaml b/golr-views/genotype_as_a_model_of_disease_association_config.yaml index ffd194471a..677e5b5958 100644 --- a/golr-views/genotype_as_a_model_of_disease_association_config.yaml +++ b/golr-views/genotype_as_a_model_of_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype_as_a_model_of_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: genotype_as_a_model_of_disease_association schema_generating: true display_name: genotype as a model of disease association document_category: genotype as a model of disease association diff --git a/golr-views/genotype_config.yaml b/golr-views/genotype_config.yaml index 7b1c8019a8..55668c5920 100644 --- a/golr-views/genotype_config.yaml +++ b/golr-views/genotype_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype +# metamodel_version: 1.7.0# version: 2.4.5id: genotype schema_generating: true description: An information content entity that describes a genome by specifying the total variation in genomic sequence and/or gene expression, relative to some established diff --git a/golr-views/genotype_to_disease_association_config.yaml b/golr-views/genotype_to_disease_association_config.yaml index ca943d9ea3..71a57790ab 100644 --- a/golr-views/genotype_to_disease_association_config.yaml +++ b/golr-views/genotype_to_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype_to_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: genotype_to_disease_association schema_generating: true display_name: genotype to disease association document_category: genotype to disease association diff --git a/golr-views/genotype_to_gene_association_config.yaml b/golr-views/genotype_to_gene_association_config.yaml index 47a3d0691f..45e2f2aa5c 100644 --- a/golr-views/genotype_to_gene_association_config.yaml +++ b/golr-views/genotype_to_gene_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype_to_gene_association +# metamodel_version: 1.7.0# version: 2.4.5id: genotype_to_gene_association schema_generating: true description: Any association between a genotype and a gene. The genotype have have multiple variants in that gene or a single one. There is no assumption of cardinality diff --git a/golr-views/genotype_to_genotype_part_association_config.yaml b/golr-views/genotype_to_genotype_part_association_config.yaml index 02470fddcd..da1ee1b24c 100644 --- a/golr-views/genotype_to_genotype_part_association_config.yaml +++ b/golr-views/genotype_to_genotype_part_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype_to_genotype_part_association +# metamodel_version: 1.7.0# version: 2.4.5id: genotype_to_genotype_part_association schema_generating: true description: Any association between one genotype and a genotypic entity that is a sub-component of it diff --git a/golr-views/genotype_to_phenotypic_feature_association_config.yaml b/golr-views/genotype_to_phenotypic_feature_association_config.yaml index 1c097fc21c..924c922ba4 100644 --- a/golr-views/genotype_to_phenotypic_feature_association_config.yaml +++ b/golr-views/genotype_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: genotype_to_phenotypic_feature_association schema_generating: true description: Any association between one genotype and a phenotypic feature, where having the genotype confers the phenotype, either in isolation or through environment diff --git a/golr-views/genotype_to_variant_association_config.yaml b/golr-views/genotype_to_variant_association_config.yaml index e7e93eb9ed..2e2b031115 100644 --- a/golr-views/genotype_to_variant_association_config.yaml +++ b/golr-views/genotype_to_variant_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotype_to_variant_association +# metamodel_version: 1.7.0# version: 2.4.5id: genotype_to_variant_association schema_generating: true description: Any association between a genotype and a sequence variant. display_name: genotype to variant association diff --git a/golr-views/genotypic_sex_config.yaml b/golr-views/genotypic_sex_config.yaml index 3867b58bba..98c50e5b8a 100644 --- a/golr-views/genotypic_sex_config.yaml +++ b/golr-views/genotypic_sex_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: genotypic_sex +# metamodel_version: 1.7.0# version: 2.4.5id: genotypic_sex schema_generating: true description: An attribute corresponding to the genotypic sex of the individual, based upon genotypic composition of sex chromosomes. diff --git a/golr-views/geographic_exposure_config.yaml b/golr-views/geographic_exposure_config.yaml index 759e6d0e1c..fdaf27da8d 100644 --- a/golr-views/geographic_exposure_config.yaml +++ b/golr-views/geographic_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: geographic_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: geographic_exposure schema_generating: true description: A geographic exposure is a factor relating to geographic proximity to some impactful entity. diff --git a/golr-views/geographic_location_at_time_config.yaml b/golr-views/geographic_location_at_time_config.yaml index 40cc2a4f77..81fa4e2dca 100644 --- a/golr-views/geographic_location_at_time_config.yaml +++ b/golr-views/geographic_location_at_time_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: geographic_location_at_time +# metamodel_version: 1.7.0# version: 2.4.5id: geographic_location_at_time schema_generating: true description: a location that can be described in lat/long coordinates, for a particular time diff --git a/golr-views/geographic_location_config.yaml b/golr-views/geographic_location_config.yaml index 6676e0fde0..4f25f43ece 100644 --- a/golr-views/geographic_location_config.yaml +++ b/golr-views/geographic_location_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: geographic_location +# metamodel_version: 1.7.0# version: 2.4.5id: geographic_location schema_generating: true description: a location that can be described in lat/long coordinates display_name: geographic location diff --git a/golr-views/gross_anatomical_structure_config.yaml b/golr-views/gross_anatomical_structure_config.yaml index 9ebdecf037..ccbf885057 100644 --- a/golr-views/gross_anatomical_structure_config.yaml +++ b/golr-views/gross_anatomical_structure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: gross_anatomical_structure +# metamodel_version: 1.7.0# version: 2.4.5id: gross_anatomical_structure schema_generating: true display_name: gross anatomical structure document_category: gross anatomical structure diff --git a/golr-views/haplotype_config.yaml b/golr-views/haplotype_config.yaml index 1cfba76d97..39e68ba67d 100644 --- a/golr-views/haplotype_config.yaml +++ b/golr-views/haplotype_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: haplotype +# metamodel_version: 1.7.0# version: 2.4.5id: haplotype schema_generating: true description: A set of zero or more Alleles on a single instance of a Sequence[VMC] display_name: haplotype diff --git a/golr-views/hospitalization_config.yaml b/golr-views/hospitalization_config.yaml index 2f6e13e884..619c0419b6 100644 --- a/golr-views/hospitalization_config.yaml +++ b/golr-views/hospitalization_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: hospitalization +# metamodel_version: 1.7.0# version: 2.4.5id: hospitalization schema_generating: true display_name: hospitalization document_category: hospitalization diff --git a/golr-views/individual_organism_config.yaml b/golr-views/individual_organism_config.yaml index d8fcc0ce60..80a70f054c 100644 --- a/golr-views/individual_organism_config.yaml +++ b/golr-views/individual_organism_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: individual_organism +# metamodel_version: 1.7.0# version: 2.4.5id: individual_organism schema_generating: true description: 'An instance of an organism. For example, Richard Nixon, Charles Darwin, my pet cat. Example ID: ORCID:0000-0002-5355-2576' diff --git a/golr-views/information_content_entity_to_named_thing_association_config.yaml b/golr-views/information_content_entity_to_named_thing_association_config.yaml index b2d250c73f..314caa61ec 100644 --- a/golr-views/information_content_entity_to_named_thing_association_config.yaml +++ b/golr-views/information_content_entity_to_named_thing_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: information_content_entity_to_named_thing_association +# metamodel_version: 1.7.0# version: 2.4.5id: information_content_entity_to_named_thing_association schema_generating: true description: association between a named thing and a information content entity where the specific context of the relationship between that named thing and the publication diff --git a/golr-views/information_resource_config.yaml b/golr-views/information_resource_config.yaml index 71442b59e4..f4b57139cb 100644 --- a/golr-views/information_resource_config.yaml +++ b/golr-views/information_resource_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: information_resource +# metamodel_version: 1.7.0# version: 2.4.5id: information_resource schema_generating: true description: A database or knowledgebase and its supporting ecosystem of interfaces and services that deliver content to consumers (e.g. web portals, APIs, query endpoints, diff --git a/golr-views/inheritance_config.yaml b/golr-views/inheritance_config.yaml index 96d7d4dce8..f813885667 100644 --- a/golr-views/inheritance_config.yaml +++ b/golr-views/inheritance_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: inheritance +# metamodel_version: 1.7.0# version: 2.4.5id: inheritance schema_generating: true description: The pattern or 'mode' in which a particular genetic trait or disorder is passed from one generation to the next, e.g. autosomal dominant, autosomal recessive, diff --git a/golr-views/life_stage_config.yaml b/golr-views/life_stage_config.yaml index e826682aa4..f5f68de8cb 100644 --- a/golr-views/life_stage_config.yaml +++ b/golr-views/life_stage_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: life_stage +# metamodel_version: 1.7.0# version: 2.4.5id: life_stage schema_generating: true description: A stage of development or growth of an organism, including post-natal adult stages diff --git a/golr-views/macromolecular_machine_to_biological_process_association_config.yaml b/golr-views/macromolecular_machine_to_biological_process_association_config.yaml index 81e585361d..a608ffb475 100644 --- a/golr-views/macromolecular_machine_to_biological_process_association_config.yaml +++ b/golr-views/macromolecular_machine_to_biological_process_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: macromolecular_machine_to_biological_process_association +# metamodel_version: 1.7.0# version: 2.4.5id: macromolecular_machine_to_biological_process_association schema_generating: true description: A functional association between a macromolecular machine (gene, gene product or complex) and a biological process or pathway (as represented in the GO diff --git a/golr-views/macromolecular_machine_to_cellular_component_association_config.yaml b/golr-views/macromolecular_machine_to_cellular_component_association_config.yaml index f27fcdd02a..4dd217e65f 100644 --- a/golr-views/macromolecular_machine_to_cellular_component_association_config.yaml +++ b/golr-views/macromolecular_machine_to_cellular_component_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: macromolecular_machine_to_cellular_component_association +# metamodel_version: 1.7.0# version: 2.4.5id: macromolecular_machine_to_cellular_component_association schema_generating: true description: A functional association between a macromolecular machine (gene, gene product or complex) and a cellular component (as represented in the GO cellular diff --git a/golr-views/macromolecular_machine_to_molecular_activity_association_config.yaml b/golr-views/macromolecular_machine_to_molecular_activity_association_config.yaml index 85d5558d4c..2a54e1e975 100644 --- a/golr-views/macromolecular_machine_to_molecular_activity_association_config.yaml +++ b/golr-views/macromolecular_machine_to_molecular_activity_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: macromolecular_machine_to_molecular_activity_association +# metamodel_version: 1.7.0# version: 2.4.5id: macromolecular_machine_to_molecular_activity_association schema_generating: true description: A functional association between a macromolecular machine (gene, gene product or complex) and a molecular activity (as represented in the GO molecular diff --git a/golr-views/macronutrient_config.yaml b/golr-views/macronutrient_config.yaml index e93ef32ae9..2ba3264fae 100644 --- a/golr-views/macronutrient_config.yaml +++ b/golr-views/macronutrient_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: macronutrient +# metamodel_version: 1.7.0# version: 2.4.5id: macronutrient schema_generating: true display_name: macronutrient document_category: macronutrient diff --git a/golr-views/material_sample_config.yaml b/golr-views/material_sample_config.yaml index 9816701a3a..0a4fcc659e 100644 --- a/golr-views/material_sample_config.yaml +++ b/golr-views/material_sample_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: material_sample +# metamodel_version: 1.7.0# version: 2.4.5id: material_sample schema_generating: true description: A sample is a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, diff --git a/golr-views/material_sample_derivation_association_config.yaml b/golr-views/material_sample_derivation_association_config.yaml index 7d42597446..855217af1e 100644 --- a/golr-views/material_sample_derivation_association_config.yaml +++ b/golr-views/material_sample_derivation_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: material_sample_derivation_association +# metamodel_version: 1.7.0# version: 2.4.5id: material_sample_derivation_association schema_generating: true description: An association between a material sample and the material entity from which it is derived. diff --git a/golr-views/material_sample_to_disease_or_phenotypic_feature_association_config.yaml b/golr-views/material_sample_to_disease_or_phenotypic_feature_association_config.yaml index 3b839cc890..f144b332a4 100644 --- a/golr-views/material_sample_to_disease_or_phenotypic_feature_association_config.yaml +++ b/golr-views/material_sample_to_disease_or_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: material_sample_to_disease_or_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: material_sample_to_disease_or_phenotypic_feature_association schema_generating: true description: An association between a material sample and a disease or phenotype. display_name: material sample to disease or phenotypic feature association diff --git a/golr-views/microRNA_config.yaml b/golr-views/microRNA_config.yaml index 3559ed9049..70877ec689 100644 --- a/golr-views/microRNA_config.yaml +++ b/golr-views/microRNA_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: microRNA +# metamodel_version: 1.7.0# version: 2.4.5id: microRNA schema_generating: true display_name: microRNA document_category: microRNA diff --git a/golr-views/micronutrient_config.yaml b/golr-views/micronutrient_config.yaml index 1e3a644a86..8432e1ded9 100644 --- a/golr-views/micronutrient_config.yaml +++ b/golr-views/micronutrient_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: micronutrient +# metamodel_version: 1.7.0# version: 2.4.5id: micronutrient schema_generating: true display_name: micronutrient document_category: micronutrient diff --git a/golr-views/molecular_activity_config.yaml b/golr-views/molecular_activity_config.yaml index 3390d0f7e7..4f10c85b66 100644 --- a/golr-views/molecular_activity_config.yaml +++ b/golr-views/molecular_activity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: molecular_activity +# metamodel_version: 1.7.0# version: 2.4.5id: molecular_activity schema_generating: true description: An execution of a molecular function carried out by a gene product or macromolecular complex. diff --git a/golr-views/molecular_activity_to_chemical_entity_association_config.yaml b/golr-views/molecular_activity_to_chemical_entity_association_config.yaml index de857966f2..2613005d96 100644 --- a/golr-views/molecular_activity_to_chemical_entity_association_config.yaml +++ b/golr-views/molecular_activity_to_chemical_entity_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: molecular_activity_to_chemical_entity_association +# metamodel_version: 1.7.0# version: 2.4.5id: molecular_activity_to_chemical_entity_association schema_generating: true description: Added in response to capturing relationship between microbiome activities as measured via measurements of blood analytes as collected via blood and stool diff --git a/golr-views/molecular_activity_to_molecular_activity_association_config.yaml b/golr-views/molecular_activity_to_molecular_activity_association_config.yaml index d88df9fc0e..7c6f9f59a6 100644 --- a/golr-views/molecular_activity_to_molecular_activity_association_config.yaml +++ b/golr-views/molecular_activity_to_molecular_activity_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: molecular_activity_to_molecular_activity_association +# metamodel_version: 1.7.0# version: 2.4.5id: molecular_activity_to_molecular_activity_association schema_generating: true description: Added in response to capturing relationship between microbiome activities as measured via measurements of blood analytes as collected via blood and stool diff --git a/golr-views/molecular_activity_to_pathway_association_config.yaml b/golr-views/molecular_activity_to_pathway_association_config.yaml index c93b6cb8e4..6370ed76a4 100644 --- a/golr-views/molecular_activity_to_pathway_association_config.yaml +++ b/golr-views/molecular_activity_to_pathway_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: molecular_activity_to_pathway_association +# metamodel_version: 1.7.0# version: 2.4.5id: molecular_activity_to_pathway_association schema_generating: true description: Association that holds the relationship between a reaction and the pathway it participates in. diff --git a/golr-views/molecular_entity_config.yaml b/golr-views/molecular_entity_config.yaml index 3c0b1b9b88..0ba97bc466 100644 --- a/golr-views/molecular_entity_config.yaml +++ b/golr-views/molecular_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: molecular_entity +# metamodel_version: 1.7.0# version: 2.4.5id: molecular_entity schema_generating: true description: A molecular entity is a chemical entity composed of individual or covalently bonded atoms. diff --git a/golr-views/molecular_mixture_config.yaml b/golr-views/molecular_mixture_config.yaml index 49f83e1923..9da1fd566a 100644 --- a/golr-views/molecular_mixture_config.yaml +++ b/golr-views/molecular_mixture_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: molecular_mixture +# metamodel_version: 1.7.0# version: 2.4.5id: molecular_mixture schema_generating: true description: A molecular mixture is a chemical mixture composed of two or more molecular entities with known concentration and stoichiometry. diff --git a/golr-views/named_thing_config.yaml b/golr-views/named_thing_config.yaml index 6554090bf1..326cb9823a 100644 --- a/golr-views/named_thing_config.yaml +++ b/golr-views/named_thing_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: named_thing +# metamodel_version: 1.7.0# version: 2.4.5id: named_thing schema_generating: true description: a databased entity or concept/class display_name: named thing diff --git a/golr-views/noncoding_RNA_product_config.yaml b/golr-views/noncoding_RNA_product_config.yaml index ac74235ee1..0af83b3a78 100644 --- a/golr-views/noncoding_RNA_product_config.yaml +++ b/golr-views/noncoding_RNA_product_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: noncoding_RNA_product +# metamodel_version: 1.7.0# version: 2.4.5id: noncoding_RNA_product schema_generating: true display_name: noncoding RNA product document_category: noncoding RNA product diff --git a/golr-views/nucleic_acid_entity_config.yaml b/golr-views/nucleic_acid_entity_config.yaml index 892ee43fd2..4a0e3e430c 100644 --- a/golr-views/nucleic_acid_entity_config.yaml +++ b/golr-views/nucleic_acid_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: nucleic_acid_entity +# metamodel_version: 1.7.0# version: 2.4.5id: nucleic_acid_entity schema_generating: true description: A nucleic acid entity is a molecular entity characterized by availability in gene databases of nucleotide-based sequence representations of its precise sequence; diff --git a/golr-views/nucleic_acid_sequence_motif_config.yaml b/golr-views/nucleic_acid_sequence_motif_config.yaml index 12e3aa9ea4..e030adf4e1 100644 --- a/golr-views/nucleic_acid_sequence_motif_config.yaml +++ b/golr-views/nucleic_acid_sequence_motif_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: nucleic_acid_sequence_motif +# metamodel_version: 1.7.0# version: 2.4.5id: nucleic_acid_sequence_motif schema_generating: true description: A linear nucleotide sequence pattern that is widespread and has, or is conjectured to have, a biological significance. e.g. the TATA box promoter motif, diff --git a/golr-views/nutrient_config.yaml b/golr-views/nutrient_config.yaml index 313eb7fa92..982f4241ab 100644 --- a/golr-views/nutrient_config.yaml +++ b/golr-views/nutrient_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: nutrient +# metamodel_version: 1.7.0# version: 2.4.5id: nutrient schema_generating: true display_name: nutrient document_category: nutrient diff --git a/golr-views/onset_config.yaml b/golr-views/onset_config.yaml index 7cd96b9fd5..0e4d3733a5 100644 --- a/golr-views/onset_config.yaml +++ b/golr-views/onset_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: onset +# metamodel_version: 1.7.0# version: 2.4.5id: onset schema_generating: true description: The age group in which (disease) symptom manifestations appear display_name: onset diff --git a/golr-views/organism_attribute_config.yaml b/golr-views/organism_attribute_config.yaml index 037d2b1404..3033b1dba2 100644 --- a/golr-views/organism_attribute_config.yaml +++ b/golr-views/organism_attribute_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: organism_attribute +# metamodel_version: 1.7.0# version: 2.4.5id: organism_attribute schema_generating: true description: describes a characteristic of an organismal entity. display_name: organism attribute diff --git a/golr-views/organism_taxon_config.yaml b/golr-views/organism_taxon_config.yaml index 6bc89f2dcf..bf86b16183 100644 --- a/golr-views/organism_taxon_config.yaml +++ b/golr-views/organism_taxon_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: organism_taxon +# metamodel_version: 1.7.0# version: 2.4.5id: organism_taxon schema_generating: true description: 'A classification of a set of organisms. Example instances: NCBITaxon:9606 (Homo sapiens), NCBITaxon:2 (Bacteria). Can also be used to represent strains or diff --git a/golr-views/organism_taxon_to_organism_taxon_interaction_config.yaml b/golr-views/organism_taxon_to_organism_taxon_interaction_config.yaml index 9c3ddd7046..49e7d1e75a 100644 --- a/golr-views/organism_taxon_to_organism_taxon_interaction_config.yaml +++ b/golr-views/organism_taxon_to_organism_taxon_interaction_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: organism_taxon_to_organism_taxon_interaction +# metamodel_version: 1.7.0# version: 2.4.5id: organism_taxon_to_organism_taxon_interaction schema_generating: true description: 'An interaction relationship between two taxa. This may be a symbiotic relationship (encompassing mutualism and parasitism), or it may be non-symbiotic. diff --git a/golr-views/organism_taxon_to_organism_taxon_specialization_config.yaml b/golr-views/organism_taxon_to_organism_taxon_specialization_config.yaml index 71eb942cdf..67ae0243d2 100644 --- a/golr-views/organism_taxon_to_organism_taxon_specialization_config.yaml +++ b/golr-views/organism_taxon_to_organism_taxon_specialization_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: organism_taxon_to_organism_taxon_specialization +# metamodel_version: 1.7.0# version: 2.4.5id: organism_taxon_to_organism_taxon_specialization schema_generating: true description: 'A child-parent relationship between two taxa. For example: Homo sapiens subclass_of Homo' diff --git a/golr-views/organism_to_organism_association_config.yaml b/golr-views/organism_to_organism_association_config.yaml index 2ed5b1e22c..c1e5d405f4 100644 --- a/golr-views/organism_to_organism_association_config.yaml +++ b/golr-views/organism_to_organism_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: organism_to_organism_association +# metamodel_version: 1.7.0# version: 2.4.5id: organism_to_organism_association schema_generating: true display_name: organism to organism association document_category: organism to organism association diff --git a/golr-views/organismal_entity_as_a_model_of_disease_association_config.yaml b/golr-views/organismal_entity_as_a_model_of_disease_association_config.yaml index f8da95bdd1..2bb29161e4 100644 --- a/golr-views/organismal_entity_as_a_model_of_disease_association_config.yaml +++ b/golr-views/organismal_entity_as_a_model_of_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: organismal_entity_as_a_model_of_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: organismal_entity_as_a_model_of_disease_association schema_generating: true display_name: organismal entity as a model of disease association document_category: organismal entity as a model of disease association diff --git a/golr-views/pairwise_gene_to_gene_interaction_config.yaml b/golr-views/pairwise_gene_to_gene_interaction_config.yaml index 058f42a321..51fdc8bd04 100644 --- a/golr-views/pairwise_gene_to_gene_interaction_config.yaml +++ b/golr-views/pairwise_gene_to_gene_interaction_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pairwise_gene_to_gene_interaction +# metamodel_version: 1.7.0# version: 2.4.5id: pairwise_gene_to_gene_interaction schema_generating: true description: An interaction between two genes or two gene products. May be physical (e.g. protein binding) or genetic (between genes). May be symmetric (e.g. protein diff --git a/golr-views/pairwise_molecular_interaction_config.yaml b/golr-views/pairwise_molecular_interaction_config.yaml index e2a5956b2d..fada46ef56 100644 --- a/golr-views/pairwise_molecular_interaction_config.yaml +++ b/golr-views/pairwise_molecular_interaction_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pairwise_molecular_interaction +# metamodel_version: 1.7.0# version: 2.4.5id: pairwise_molecular_interaction schema_generating: true description: An interaction at the molecular level between two physical entities display_name: pairwise molecular interaction diff --git a/golr-views/pathological_anatomical_exposure_config.yaml b/golr-views/pathological_anatomical_exposure_config.yaml index 4e25bd712e..3a6a73e922 100644 --- a/golr-views/pathological_anatomical_exposure_config.yaml +++ b/golr-views/pathological_anatomical_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pathological_anatomical_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: pathological_anatomical_exposure schema_generating: true description: An abnormal anatomical structure, when viewed as an exposure, representing an precondition, leading to or influencing an outcome, e.g. thrombosis leading to diff --git a/golr-views/pathological_anatomical_structure_config.yaml b/golr-views/pathological_anatomical_structure_config.yaml index ad7bf86f9d..0563e70203 100644 --- a/golr-views/pathological_anatomical_structure_config.yaml +++ b/golr-views/pathological_anatomical_structure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pathological_anatomical_structure +# metamodel_version: 1.7.0# version: 2.4.5id: pathological_anatomical_structure schema_generating: true description: An anatomical structure with the potential of have an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level. diff --git a/golr-views/pathological_process_config.yaml b/golr-views/pathological_process_config.yaml index 3c8bf63be2..c951b6cec4 100644 --- a/golr-views/pathological_process_config.yaml +++ b/golr-views/pathological_process_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pathological_process +# metamodel_version: 1.7.0# version: 2.4.5id: pathological_process schema_generating: true description: A biologic function or a process having an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level. diff --git a/golr-views/pathological_process_exposure_config.yaml b/golr-views/pathological_process_exposure_config.yaml index dd6a65feb5..f8a8d88d1a 100644 --- a/golr-views/pathological_process_exposure_config.yaml +++ b/golr-views/pathological_process_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pathological_process_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: pathological_process_exposure schema_generating: true description: A pathological process, when viewed as an exposure, representing a precondition, leading to or influencing an outcome, e.g. autoimmunity leading to disease. diff --git a/golr-views/pathway_config.yaml b/golr-views/pathway_config.yaml index cb2da85094..1c11ea0417 100644 --- a/golr-views/pathway_config.yaml +++ b/golr-views/pathway_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: pathway +# metamodel_version: 1.7.0# version: 2.4.5id: pathway schema_generating: true display_name: pathway document_category: pathway diff --git a/golr-views/phenomenon_config.yaml b/golr-views/phenomenon_config.yaml index 630f270de6..46388b4738 100644 --- a/golr-views/phenomenon_config.yaml +++ b/golr-views/phenomenon_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: phenomenon +# metamodel_version: 1.7.0# version: 2.4.5id: phenomenon schema_generating: true description: a fact or situation that is observed to exist or happen, especially one whose cause or explanation is in question diff --git a/golr-views/phenotypic_feature_config.yaml b/golr-views/phenotypic_feature_config.yaml index 8b5c6fa9b5..a213d29522 100644 --- a/golr-views/phenotypic_feature_config.yaml +++ b/golr-views/phenotypic_feature_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: phenotypic_feature +# metamodel_version: 1.7.0# version: 2.4.5id: phenotypic_feature schema_generating: true description: A combination of entity and quality that makes up a phenotyping statement. display_name: phenotypic feature diff --git a/golr-views/phenotypic_quality_config.yaml b/golr-views/phenotypic_quality_config.yaml index d9f40c336c..2372ce259e 100644 --- a/golr-views/phenotypic_quality_config.yaml +++ b/golr-views/phenotypic_quality_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: phenotypic_quality +# metamodel_version: 1.7.0# version: 2.4.5id: phenotypic_quality schema_generating: true description: A property of a phenotype display_name: phenotypic quality diff --git a/golr-views/phenotypic_sex_config.yaml b/golr-views/phenotypic_sex_config.yaml index db97129fff..a65f96f174 100644 --- a/golr-views/phenotypic_sex_config.yaml +++ b/golr-views/phenotypic_sex_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: phenotypic_sex +# metamodel_version: 1.7.0# version: 2.4.5id: phenotypic_sex schema_generating: true description: An attribute corresponding to the phenotypic sex of the individual, based upon the reproductive organs present. diff --git a/golr-views/physical_entity_config.yaml b/golr-views/physical_entity_config.yaml index 4c12824a06..7d6b8701f4 100644 --- a/golr-views/physical_entity_config.yaml +++ b/golr-views/physical_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: physical_entity +# metamodel_version: 1.7.0# version: 2.4.5id: physical_entity schema_generating: true description: An entity that has material reality (a.k.a. physical essence). display_name: physical entity diff --git a/golr-views/physiological_process_config.yaml b/golr-views/physiological_process_config.yaml index 5938aaa1cb..e209871d27 100644 --- a/golr-views/physiological_process_config.yaml +++ b/golr-views/physiological_process_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: physiological_process +# metamodel_version: 1.7.0# version: 2.4.5id: physiological_process schema_generating: true display_name: physiological process document_category: physiological process diff --git a/golr-views/planetary_entity_config.yaml b/golr-views/planetary_entity_config.yaml index 85b41666df..01135152c6 100644 --- a/golr-views/planetary_entity_config.yaml +++ b/golr-views/planetary_entity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: planetary_entity +# metamodel_version: 1.7.0# version: 2.4.5id: planetary_entity schema_generating: true description: Any entity or process that exists at the level of the whole planet display_name: planetary entity diff --git a/golr-views/polypeptide_config.yaml b/golr-views/polypeptide_config.yaml index 991f166d25..f90e07ac8b 100644 --- a/golr-views/polypeptide_config.yaml +++ b/golr-views/polypeptide_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: polypeptide +# metamodel_version: 1.7.0# version: 2.4.5id: polypeptide schema_generating: true description: A polypeptide is a molecular entity characterized by availability in protein databases of amino-acid-based sequence representations of its precise primary diff --git a/golr-views/population_of_individual_organisms_config.yaml b/golr-views/population_of_individual_organisms_config.yaml index c2f8b2bd3b..6648760afd 100644 --- a/golr-views/population_of_individual_organisms_config.yaml +++ b/golr-views/population_of_individual_organisms_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: population_of_individual_organisms +# metamodel_version: 1.7.0# version: 2.4.5id: population_of_individual_organisms schema_generating: true description: A collection of individuals from the same taxonomic class distinguished by one or more characteristics. Characteristics can include, but are not limited diff --git a/golr-views/population_to_population_association_config.yaml b/golr-views/population_to_population_association_config.yaml index 53bf0fcc17..a9404800b5 100644 --- a/golr-views/population_to_population_association_config.yaml +++ b/golr-views/population_to_population_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: population_to_population_association +# metamodel_version: 1.7.0# version: 2.4.5id: population_to_population_association schema_generating: true description: An association between a two populations display_name: population to population association diff --git a/golr-views/procedure_config.yaml b/golr-views/procedure_config.yaml index 51667917bc..a6640e1426 100644 --- a/golr-views/procedure_config.yaml +++ b/golr-views/procedure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: procedure +# metamodel_version: 1.7.0# version: 2.4.5id: procedure schema_generating: true description: A series of actions conducted in a certain order or manner display_name: procedure diff --git a/golr-views/processed_material_config.yaml b/golr-views/processed_material_config.yaml index 7278702e4c..64f5ce0e6f 100644 --- a/golr-views/processed_material_config.yaml +++ b/golr-views/processed_material_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: processed_material +# metamodel_version: 1.7.0# version: 2.4.5id: processed_material schema_generating: true description: A chemical entity (often a mixture) processed for consumption for nutritional, medical or technical use. Is a material entity that is created or changed during diff --git a/golr-views/protein_config.yaml b/golr-views/protein_config.yaml index fe38bdea2a..87fd4f9d7b 100644 --- a/golr-views/protein_config.yaml +++ b/golr-views/protein_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: protein +# metamodel_version: 1.7.0# version: 2.4.5id: protein schema_generating: true description: A gene product that is composed of a chain of amino acid sequences and is produced by ribosome-mediated translation of mRNA diff --git a/golr-views/protein_domain_config.yaml b/golr-views/protein_domain_config.yaml index a8cf30be6a..27c77e0bbc 100644 --- a/golr-views/protein_domain_config.yaml +++ b/golr-views/protein_domain_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: protein_domain +# metamodel_version: 1.7.0# version: 2.4.5id: protein_domain schema_generating: true description: A conserved part of protein sequence and (tertiary) structure that can evolve, function, and exist independently of the rest of the protein chain. Protein diff --git a/golr-views/protein_family_config.yaml b/golr-views/protein_family_config.yaml index 64643ea353..a8f06ecfa6 100644 --- a/golr-views/protein_family_config.yaml +++ b/golr-views/protein_family_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: protein_family +# metamodel_version: 1.7.0# version: 2.4.5id: protein_family schema_generating: true display_name: protein family document_category: protein family diff --git a/golr-views/protein_isoform_config.yaml b/golr-views/protein_isoform_config.yaml index abb3ab8bf7..31a8eec8bd 100644 --- a/golr-views/protein_isoform_config.yaml +++ b/golr-views/protein_isoform_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: protein_isoform +# metamodel_version: 1.7.0# version: 2.4.5id: protein_isoform schema_generating: true description: Represents a protein that is a specific isoform of the canonical or reference protein. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4114032/ diff --git a/golr-views/publication_config.yaml b/golr-views/publication_config.yaml index 7f0d93fdd1..aae0c84f79 100644 --- a/golr-views/publication_config.yaml +++ b/golr-views/publication_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: publication +# metamodel_version: 1.7.0# version: 2.4.5id: publication schema_generating: true description: Any published piece of information. Can refer to a whole publication, its encompassing publication (i.e. journal or book) or to a part of a publication, diff --git a/golr-views/quantity_value_config.yaml b/golr-views/quantity_value_config.yaml index 112335c6e0..8b5d2d7b2c 100644 --- a/golr-views/quantity_value_config.yaml +++ b/golr-views/quantity_value_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: quantity_value +# metamodel_version: 1.7.0# version: 2.4.5id: quantity_value schema_generating: true description: A value of an attribute that is quantitative and measurable, expressed as a combination of a unit and a numeric value diff --git a/golr-views/reaction_to_catalyst_association_config.yaml b/golr-views/reaction_to_catalyst_association_config.yaml index 3ba0fca937..920b3b2826 100644 --- a/golr-views/reaction_to_catalyst_association_config.yaml +++ b/golr-views/reaction_to_catalyst_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: reaction_to_catalyst_association +# metamodel_version: 1.7.0# version: 2.4.5id: reaction_to_catalyst_association schema_generating: true display_name: reaction to catalyst association document_category: reaction to catalyst association diff --git a/golr-views/reaction_to_participant_association_config.yaml b/golr-views/reaction_to_participant_association_config.yaml index 614c01c954..380d04ad75 100644 --- a/golr-views/reaction_to_participant_association_config.yaml +++ b/golr-views/reaction_to_participant_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: reaction_to_participant_association +# metamodel_version: 1.7.0# version: 2.4.5id: reaction_to_participant_association schema_generating: true display_name: reaction to participant association document_category: reaction to participant association diff --git a/golr-views/reagent_targeted_gene_config.yaml b/golr-views/reagent_targeted_gene_config.yaml index b5296b1b35..3170a7a37f 100644 --- a/golr-views/reagent_targeted_gene_config.yaml +++ b/golr-views/reagent_targeted_gene_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: reagent_targeted_gene +# metamodel_version: 1.7.0# version: 2.4.5id: reagent_targeted_gene schema_generating: true description: A gene altered in its expression level in the context of some experiment as a result of being targeted by gene-knockdown reagent(s) such as a morpholino diff --git a/golr-views/sequence_association_config.yaml b/golr-views/sequence_association_config.yaml index c18ee99789..bf8a1370c5 100644 --- a/golr-views/sequence_association_config.yaml +++ b/golr-views/sequence_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: sequence_association +# metamodel_version: 1.7.0# version: 2.4.5id: sequence_association schema_generating: true description: An association between a sequence feature and a nucleic acid entity it is localized to. diff --git a/golr-views/sequence_feature_relationship_config.yaml b/golr-views/sequence_feature_relationship_config.yaml index 7cf0d0242a..1fac6bee9b 100644 --- a/golr-views/sequence_feature_relationship_config.yaml +++ b/golr-views/sequence_feature_relationship_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: sequence_feature_relationship +# metamodel_version: 1.7.0# version: 2.4.5id: sequence_feature_relationship schema_generating: true description: For example, a particular exon is part of a particular transcript or gene diff --git a/golr-views/sequence_variant_config.yaml b/golr-views/sequence_variant_config.yaml index 4ffe2721ec..a98a6a841d 100644 --- a/golr-views/sequence_variant_config.yaml +++ b/golr-views/sequence_variant_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: sequence_variant +# metamodel_version: 1.7.0# version: 2.4.5id: sequence_variant schema_generating: true description: An allele that varies in its sequence from what is considered the reference allele at that locus. diff --git a/golr-views/serial_config.yaml b/golr-views/serial_config.yaml index e55a758b16..1bf815b1c1 100644 --- a/golr-views/serial_config.yaml +++ b/golr-views/serial_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: serial +# metamodel_version: 1.7.0# version: 2.4.5id: serial schema_generating: true description: This class may rarely be instantiated except if use cases of a given knowledge graph support its utility. diff --git a/golr-views/severity_value_config.yaml b/golr-views/severity_value_config.yaml index a6d3fdd73a..272921567d 100644 --- a/golr-views/severity_value_config.yaml +++ b/golr-views/severity_value_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: severity_value +# metamodel_version: 1.7.0# version: 2.4.5id: severity_value schema_generating: true description: describes the severity of a phenotypic feature or disease display_name: severity value diff --git a/golr-views/siRNA_config.yaml b/golr-views/siRNA_config.yaml index 5f93f2611c..c7fc5587cb 100644 --- a/golr-views/siRNA_config.yaml +++ b/golr-views/siRNA_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: siRNA +# metamodel_version: 1.7.0# version: 2.4.5id: siRNA schema_generating: true description: A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via diff --git a/golr-views/small_molecule_config.yaml b/golr-views/small_molecule_config.yaml index b058c5f3b1..3550761a82 100644 --- a/golr-views/small_molecule_config.yaml +++ b/golr-views/small_molecule_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: small_molecule +# metamodel_version: 1.7.0# version: 2.4.5id: small_molecule schema_generating: true description: A small molecule entity is a molecular entity characterized by availability in small-molecule databases of SMILES, InChI, IUPAC, or other unambiguous representation diff --git a/golr-views/snv_config.yaml b/golr-views/snv_config.yaml index bc1f574e67..5062b6c74a 100644 --- a/golr-views/snv_config.yaml +++ b/golr-views/snv_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: snv +# metamodel_version: 1.7.0# version: 2.4.5id: snv schema_generating: true description: SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist diff --git a/golr-views/socioeconomic_attribute_config.yaml b/golr-views/socioeconomic_attribute_config.yaml index 4d01b5d7f4..65c92f33d5 100644 --- a/golr-views/socioeconomic_attribute_config.yaml +++ b/golr-views/socioeconomic_attribute_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: socioeconomic_attribute +# metamodel_version: 1.7.0# version: 2.4.5id: socioeconomic_attribute schema_generating: true description: Attributes relating to a socioeconomic manifestation display_name: socioeconomic attribute diff --git a/golr-views/socioeconomic_exposure_config.yaml b/golr-views/socioeconomic_exposure_config.yaml index 5846c52b0f..38d91b0a12 100644 --- a/golr-views/socioeconomic_exposure_config.yaml +++ b/golr-views/socioeconomic_exposure_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: socioeconomic_exposure +# metamodel_version: 1.7.0# version: 2.4.5id: socioeconomic_exposure schema_generating: true description: A socioeconomic exposure is a factor relating to social and financial status of an affected individual (e.g. poverty). diff --git a/golr-views/study_population_config.yaml b/golr-views/study_population_config.yaml index 7e88e25cd5..65b6601431 100644 --- a/golr-views/study_population_config.yaml +++ b/golr-views/study_population_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: study_population +# metamodel_version: 1.7.0# version: 2.4.5id: study_population schema_generating: true description: A group of people banded together or treated as a group as participants in a research study. diff --git a/golr-views/taxon_to_taxon_association_config.yaml b/golr-views/taxon_to_taxon_association_config.yaml index 3b4bb4e52f..6c698d1e8c 100644 --- a/golr-views/taxon_to_taxon_association_config.yaml +++ b/golr-views/taxon_to_taxon_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: taxon_to_taxon_association +# metamodel_version: 1.7.0# version: 2.4.5id: taxon_to_taxon_association schema_generating: true display_name: taxon to taxon association document_category: taxon to taxon association diff --git a/golr-views/transcript_config.yaml b/golr-views/transcript_config.yaml index 1f52820c7b..c89adc9f98 100644 --- a/golr-views/transcript_config.yaml +++ b/golr-views/transcript_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: transcript +# metamodel_version: 1.7.0# version: 2.4.5id: transcript schema_generating: true description: An RNA synthesized on a DNA or RNA template by an RNA polymerase. display_name: transcript diff --git a/golr-views/transcript_to_gene_relationship_config.yaml b/golr-views/transcript_to_gene_relationship_config.yaml index 1aff7923ff..b9bf28f36f 100644 --- a/golr-views/transcript_to_gene_relationship_config.yaml +++ b/golr-views/transcript_to_gene_relationship_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: transcript_to_gene_relationship +# metamodel_version: 1.7.0# version: 2.4.5id: transcript_to_gene_relationship schema_generating: true description: A gene is a collection of transcripts display_name: transcript to gene relationship diff --git a/golr-views/treatment_config.yaml b/golr-views/treatment_config.yaml index 5a015e8d51..938571780a 100644 --- a/golr-views/treatment_config.yaml +++ b/golr-views/treatment_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: treatment +# metamodel_version: 1.7.0# version: 2.4.5id: treatment schema_generating: true description: A treatment is targeted at a disease or phenotype and may involve multiple drug 'exposures', medical devices and/or procedures diff --git a/golr-views/variant_as_a_model_of_disease_association_config.yaml b/golr-views/variant_as_a_model_of_disease_association_config.yaml index 67ed0e31ca..9a2b0a6ff2 100644 --- a/golr-views/variant_as_a_model_of_disease_association_config.yaml +++ b/golr-views/variant_as_a_model_of_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: variant_as_a_model_of_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: variant_as_a_model_of_disease_association schema_generating: true display_name: variant as a model of disease association document_category: variant as a model of disease association diff --git a/golr-views/variant_to_disease_association_config.yaml b/golr-views/variant_to_disease_association_config.yaml index 6defa1703b..606d193ac7 100644 --- a/golr-views/variant_to_disease_association_config.yaml +++ b/golr-views/variant_to_disease_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: variant_to_disease_association +# metamodel_version: 1.7.0# version: 2.4.5id: variant_to_disease_association schema_generating: true display_name: variant to disease association document_category: variant to disease association diff --git a/golr-views/variant_to_gene_association_config.yaml b/golr-views/variant_to_gene_association_config.yaml index 2c5e9b7dfd..5e69285724 100644 --- a/golr-views/variant_to_gene_association_config.yaml +++ b/golr-views/variant_to_gene_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: variant_to_gene_association +# metamodel_version: 1.7.0# version: 2.4.5id: variant_to_gene_association schema_generating: true description: An association between a variant and a gene, where the variant has a genetic association with the gene (i.e. is in linkage disequilibrium) diff --git a/golr-views/variant_to_gene_expression_association_config.yaml b/golr-views/variant_to_gene_expression_association_config.yaml index b63dcc7807..78c3ded716 100644 --- a/golr-views/variant_to_gene_expression_association_config.yaml +++ b/golr-views/variant_to_gene_expression_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: variant_to_gene_expression_association +# metamodel_version: 1.7.0# version: 2.4.5id: variant_to_gene_expression_association schema_generating: true description: An association between a variant and expression of a gene (i.e. e-QTL) display_name: variant to gene expression association diff --git a/golr-views/variant_to_phenotypic_feature_association_config.yaml b/golr-views/variant_to_phenotypic_feature_association_config.yaml index 52ce3ff5d3..e70e075a94 100644 --- a/golr-views/variant_to_phenotypic_feature_association_config.yaml +++ b/golr-views/variant_to_phenotypic_feature_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: variant_to_phenotypic_feature_association +# metamodel_version: 1.7.0# version: 2.4.5id: variant_to_phenotypic_feature_association schema_generating: true display_name: variant to phenotypic feature association document_category: variant to phenotypic feature association diff --git a/golr-views/variant_to_population_association_config.yaml b/golr-views/variant_to_population_association_config.yaml index 61d3dda2d9..7fa4db7977 100644 --- a/golr-views/variant_to_population_association_config.yaml +++ b/golr-views/variant_to_population_association_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: variant_to_population_association +# metamodel_version: 1.7.0# version: 2.4.5id: variant_to_population_association schema_generating: true description: An association between a variant and a population, where the variant has particular frequency in the population diff --git a/golr-views/vitamin_config.yaml b/golr-views/vitamin_config.yaml index 22bd812002..d9a1d5472b 100644 --- a/golr-views/vitamin_config.yaml +++ b/golr-views/vitamin_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: vitamin +# metamodel_version: 1.7.0# version: 2.4.5id: vitamin schema_generating: true display_name: vitamin document_category: vitamin diff --git a/golr-views/zygosity_config.yaml b/golr-views/zygosity_config.yaml index 471ff1b558..b39ae1027c 100644 --- a/golr-views/zygosity_config.yaml +++ b/golr-views/zygosity_config.yaml @@ -1,4 +1,4 @@ -# metamodel_version: 1.7.0# version: 2.4.4id: zygosity +# metamodel_version: 1.7.0# version: 2.4.5id: zygosity schema_generating: true display_name: zygosity document_category: zygosity diff --git a/json-schema/biolink-model.json b/json-schema/biolink-model.json index 565d04dc9d..b56d86e466 100644 --- a/json-schema/biolink-model.json +++ b/json-schema/biolink-model.json @@ -18628,6 +18628,6 @@ "required": [], "title": "Biolink-Model", "type": "object", - "version": "2.4.4" + "version": "2.4.5" }