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setup.py
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# Much of this page is taken from the gemelli setup file
import ast
import re
from setuptools import find_packages, setup
# version parsing from __init__ pulled from Flask's setup.py
# https://github.com/mitsuhiko/flask/blob/master/setup.py
_version_re = re.compile(r"__version__\s+=\s+(.*)")
with open("evident/__init__.py", "rb") as f:
hit = _version_re.search(f.read().decode("utf-8")).group(1)
version = str(ast.literal_eval(hit))
with open("README.md") as f:
long_description = f.read()
q2_cmds = ["q2-evident=evident.q2.plugin_setup:plugin"]
classes = """
Development Status :: 4 - Beta
License :: OSI Approved :: BSD License
Topic :: Software Development :: Libraries
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Bio-Informatics
Programming Language :: Python :: 3
Programming Language :: Python :: 3 :: Only
Operating System :: Unix
Operating System :: POSIX
Operating System :: MacOS :: MacOS X
"""
classifiers = [s.strip() for s in classes.split("\n") if s]
description = "Effect size calculations for microbiome data."
setup(
name="evident",
author="Gibraan Rahman",
author_email="[email protected]",
description=description,
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/biocore/evident",
version=version,
license="BSD-3-Clause",
packages=find_packages(),
install_requires=[
"numpy",
"pandas>=1.0.0",
"statsmodels",
"scikit-bio>=0.5.6",
"matplotlib",
"seaborn",
"bokeh",
"click"
],
include_package_data=True,
classifiers=classifiers,
extras_require={"dev": ["pytest", "pytest-cov", "flake8"]},
entry_points={"qiime2.plugins": q2_cmds},
package_data={
"evident": ["citations.bib", "q2/dataframe.css", "q2/curve.css",
"support_files"]
}
)