From ec03bd6bc8fabedd1dcacade32c890f1e2b40869 Mon Sep 17 00:00:00 2001
From: Russell Neches <russell@vort.org>
Date: Mon, 23 Dec 2024 17:33:24 +0900
Subject: [PATCH 1/5] conda recipe for SuchTree

---
 recipes/suchtree/meta.yaml | 56 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100644 recipes/suchtree/meta.yaml

diff --git a/recipes/suchtree/meta.yaml b/recipes/suchtree/meta.yaml
new file mode 100644
index 0000000000000..db8a4e0f35469
--- /dev/null
+++ b/recipes/suchtree/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "SuchTree" %}
+{% set version = "1.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://files.pythonhosted.org/packages/db/f0/75245602f31f80d18a7ffd4b4739e2eb442e46801c1c0ea430c0f002f2e7/suchtree-1.2.tar.gz"
+  sha256: c45af37beb1a210097151b807ccde9966c72a3cfa99ecfe80251bcc0a14f1f60
+
+build:
+  number: 0
+  dependencies:
+    - cython
+    - scipy
+    - numpy >=2.0
+  script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
+
+requirements:
+  build:
+    - cython
+    - scipy
+    - numpy >=2.0
+  host:
+    - pip
+    - python
+    - cython
+    - scipy
+    - numpy >=2.0
+  run:
+    - python
+    - dendropy
+    - pandas >2.1
+    - numpy >=2.0
+    - scipy
+
+test:
+  imports:
+    - SuchTree
+
+about:
+  home: The package home page
+  license: BSD
+  license_family: BSD
+  license_file: LICENSE
+  summary: "A python library for doing fast, thread-safe computations on phylogenetic trees"
+  doc_url: https://github.com/ryneches/SuchTree/blob/master/README.md 
+  dev_url: https://github.com/ryneches/SuchTree/
+
+extra:
+  identifiers:
+    - biotools:suchtree
+    - doi:10.21105/joss.00678
+  recipe-maintainers:
+    - ryneches

From bfe73ccf57766d227832335ba6160ce4a750f8c1 Mon Sep 17 00:00:00 2001
From: Russell Neches <russell@vort.org>
Date: Mon, 23 Dec 2024 18:11:21 +0900
Subject: [PATCH 2/5] update recipe for SuchTree

---
 recipes/suchtree/meta.yaml | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/recipes/suchtree/meta.yaml b/recipes/suchtree/meta.yaml
index db8a4e0f35469..c05e5aff24d3a 100644
--- a/recipes/suchtree/meta.yaml
+++ b/recipes/suchtree/meta.yaml
@@ -15,23 +15,27 @@ build:
     - cython
     - scipy
     - numpy >=2.0
+  run_exports:
+    - {{ pin_subpackage( "suchtree", max_pin="x.x" ) }}
   script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
 
 requirements:
   build:
+    - {{ compiler('c') }}
     - cython
     - scipy
     - numpy >=2.0
   host:
-    - pip
-    - python
     - cython
+    - python
+    - pip
+    - setuptools
     - scipy
     - numpy >=2.0
   run:
     - python
     - dendropy
-    - pandas >2.1
+    - pandas >=2.1
     - numpy >=2.0
     - scipy
 

From b2b541e9f28da33021c834026aa6876770394fb9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Mon, 23 Dec 2024 10:49:49 +0100
Subject: [PATCH 3/5] Update recipes/suchtree/meta.yaml

---
 recipes/suchtree/meta.yaml | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/recipes/suchtree/meta.yaml b/recipes/suchtree/meta.yaml
index c05e5aff24d3a..91a3cc55a848b 100644
--- a/recipes/suchtree/meta.yaml
+++ b/recipes/suchtree/meta.yaml
@@ -11,10 +11,6 @@ source:
 
 build:
   number: 0
-  dependencies:
-    - cython
-    - scipy
-    - numpy >=2.0
   run_exports:
     - {{ pin_subpackage( "suchtree", max_pin="x.x" ) }}
   script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"

From 13771c60f4af9e153a5d19fb3a274595943bf453 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Mon, 23 Dec 2024 10:49:56 +0100
Subject: [PATCH 4/5] Update recipes/suchtree/meta.yaml

---
 recipes/suchtree/meta.yaml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/recipes/suchtree/meta.yaml b/recipes/suchtree/meta.yaml
index 91a3cc55a848b..9132a8e6b800e 100644
--- a/recipes/suchtree/meta.yaml
+++ b/recipes/suchtree/meta.yaml
@@ -18,9 +18,6 @@ build:
 requirements:
   build:
     - {{ compiler('c') }}
-    - cython
-    - scipy
-    - numpy >=2.0
   host:
     - cython
     - python

From 754e9eed68fbecb8a65868043a145e6fc8d5a04b Mon Sep 17 00:00:00 2001
From: Russell Neches <russell@vort.org>
Date: Tue, 24 Dec 2024 12:01:58 +0900
Subject: [PATCH 5/5] fix home URL, use jinja template for source URL

---
 recipes/suchtree/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/suchtree/meta.yaml b/recipes/suchtree/meta.yaml
index 9132a8e6b800e..5117ea5130e7e 100644
--- a/recipes/suchtree/meta.yaml
+++ b/recipes/suchtree/meta.yaml
@@ -6,7 +6,7 @@ package:
   version: "{{ version }}"
 
 source:
-  url: "https://files.pythonhosted.org/packages/db/f0/75245602f31f80d18a7ffd4b4739e2eb442e46801c1c0ea430c0f002f2e7/suchtree-1.2.tar.gz"
+  url: "https://pypi.io/packages/source/{{ name[0]|lower }}/{{ name }}/{{ name|lower }}-{{ version }}.tar.gz"
   sha256: c45af37beb1a210097151b807ccde9966c72a3cfa99ecfe80251bcc0a14f1f60
 
 build:
@@ -37,7 +37,7 @@ test:
     - SuchTree
 
 about:
-  home: The package home page
+  home: https://github.com/ryneches/SuchTree/
   license: BSD
   license_family: BSD
   license_file: LICENSE