From f9955450d8445965188a7349e8c46d9d6ab88920 Mon Sep 17 00:00:00 2001 From: rna-editing1 <165478322+rna-editing1@users.noreply.github.com> Date: Sun, 22 Dec 2024 14:52:02 +0000 Subject: [PATCH 1/5] lodei recipe --- recipes/lodei/meta.yaml | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 recipes/lodei/meta.yaml diff --git a/recipes/lodei/meta.yaml b/recipes/lodei/meta.yaml new file mode 100644 index 0000000000000..837431cc54a10 --- /dev/null +++ b/recipes/lodei/meta.yaml @@ -0,0 +1,35 @@ +package: + name: lodei + version: 1.0.0 + +source: + url: https://github.com/rna-editing1/lodei/archive/refs/tags/v1.0.0.tar.gz + md5: aab7ea1fa9c1e7b250b8b2d02065dd5d + +build: + number: 0 + script: python -m pip install . --no-deps --ignore-installed + run_exports: + - {{ pin_subpackage('lodei', max_pin="x") }} + +requirements: + host: + - python + - pip + run: + - pysamstats=1.1.2 + - pandas + - matplotlib + +test: + commands: + - lodei --help + +about: + home: https://github.com/rna-editing1/lodei + license: GPL-3.0 license + summary: Analyze differentially edited A-to-I regions in two sets of RNA-seq samples. + details: | + LoDEI - the local differential editing index - offers a collection of programs + to detect and analyze differentially edited A-to-I regions in two sets of RNA-seq samples. + From 794a61d252aed055e8b7f4042d3b1dbca4d28507 Mon Sep 17 00:00:00 2001 From: rna-editing1 <165478322+rna-editing1@users.noreply.github.com> Date: Sun, 22 Dec 2024 15:16:19 +0000 Subject: [PATCH 2/5] changed recipe --- recipes/lodei/meta.yaml | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/recipes/lodei/meta.yaml b/recipes/lodei/meta.yaml index 837431cc54a10..e8cc4f93ecf9d 100644 --- a/recipes/lodei/meta.yaml +++ b/recipes/lodei/meta.yaml @@ -7,6 +7,7 @@ source: md5: aab7ea1fa9c1e7b250b8b2d02065dd5d build: + noarch: python number: 0 script: python -m pip install . --no-deps --ignore-installed run_exports: @@ -17,9 +18,9 @@ requirements: - python - pip run: - - pysamstats=1.1.2 + - pysamstats =1.1.2 - pandas - - matplotlib + - matplotlib-base test: commands: @@ -27,7 +28,8 @@ test: about: home: https://github.com/rna-editing1/lodei - license: GPL-3.0 license + license: GPL-3.0 + license_file: LICENSE summary: Analyze differentially edited A-to-I regions in two sets of RNA-seq samples. details: | LoDEI - the local differential editing index - offers a collection of programs From 68d637ac1b6536f8536386100df5ae109531a605 Mon Sep 17 00:00:00 2001 From: rna-editing1 <165478322+rna-editing1@users.noreply.github.com> Date: Sun, 22 Dec 2024 18:57:04 +0000 Subject: [PATCH 3/5] update DOI --- recipes/lodei/meta.yaml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/recipes/lodei/meta.yaml b/recipes/lodei/meta.yaml index e8cc4f93ecf9d..451d3952e4a17 100644 --- a/recipes/lodei/meta.yaml +++ b/recipes/lodei/meta.yaml @@ -35,3 +35,6 @@ about: LoDEI - the local differential editing index - offers a collection of programs to detect and analyze differentially edited A-to-I regions in two sets of RNA-seq samples. +extra: + identifiers: + -doi: 10.1038/s41467-024-53298-y From 285ff6ac74f8f38f0535deb1319d73b419c1baa9 Mon Sep 17 00:00:00 2001 From: rna-editing1 <165478322+rna-editing1@users.noreply.github.com> Date: Sun, 22 Dec 2024 19:40:33 +0000 Subject: [PATCH 4/5] update recipe --- recipes/lodei/meta.yaml | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/recipes/lodei/meta.yaml b/recipes/lodei/meta.yaml index 451d3952e4a17..7e54644fca571 100644 --- a/recipes/lodei/meta.yaml +++ b/recipes/lodei/meta.yaml @@ -1,9 +1,11 @@ +{% set version = "1.0.0" %} + package: name: lodei version: 1.0.0 source: - url: https://github.com/rna-editing1/lodei/archive/refs/tags/v1.0.0.tar.gz + url: https://github.com/rna-editing1/lodei/archive/refs/tags/v{{version}}.tar.gz md5: aab7ea1fa9c1e7b250b8b2d02065dd5d build: @@ -18,7 +20,7 @@ requirements: - python - pip run: - - pysamstats =1.1.2 + - pysamstats - pandas - matplotlib-base @@ -28,13 +30,10 @@ test: about: home: https://github.com/rna-editing1/lodei - license: GPL-3.0 + license: GPL-3.0-or-later license_file: LICENSE + doi: 10.1038/s41467-024-53298-y summary: Analyze differentially edited A-to-I regions in two sets of RNA-seq samples. details: | LoDEI - the local differential editing index - offers a collection of programs to detect and analyze differentially edited A-to-I regions in two sets of RNA-seq samples. - -extra: - identifiers: - -doi: 10.1038/s41467-024-53298-y From 47bdb924da795ff46aa195093edcfac8946337a3 Mon Sep 17 00:00:00 2001 From: Martin Grigorov Date: Mon, 23 Dec 2024 10:11:57 +0200 Subject: [PATCH 5/5] Update meta.yaml --- recipes/lodei/meta.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/recipes/lodei/meta.yaml b/recipes/lodei/meta.yaml index 7e54644fca571..9759cc4bbe57a 100644 --- a/recipes/lodei/meta.yaml +++ b/recipes/lodei/meta.yaml @@ -2,16 +2,16 @@ package: name: lodei - version: 1.0.0 + version: {{version}} source: url: https://github.com/rna-editing1/lodei/archive/refs/tags/v{{version}}.tar.gz - md5: aab7ea1fa9c1e7b250b8b2d02065dd5d + sha256: e71d7bbd28a8227c8e5757c79f4c94f1bf9e1db278782cb82e5bcc2147721dfe build: noarch: python number: 0 - script: python -m pip install . --no-deps --ignore-installed + script: python -m pip install . --no-deps --no-build-isolation -vvv run_exports: - {{ pin_subpackage('lodei', max_pin="x") }}