diff --git a/recipes/simlord/build_failure.linux-64.yaml b/recipes/simlord/build_failure.linux-64.yaml deleted file mode 100644 index 8a04c7fb0a30f..0000000000000 --- a/recipes/simlord/build_failure.linux-64.yaml +++ /dev/null @@ -1,104 +0,0 @@ -recipe_sha: 231643e4137f1ea54da1960fde70610dac7481c5b7d8fc0c478ccb3d3ca0c4b3 # The hash of the recipe's meta.yaml at which this recipe failed to build. -skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above. -log: |- - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("python=3.4"), MatchSpec("dinopy==1.2.0=py34_0")} - Encountered problems while solving: - - package dinopy-1.2.0-py34_0 requires python 3.4*, but none of the providers can be installed - - Could not solve for environment specs - The following packages are incompatible - [32mdinopy[0m is installable with the potential options - [32mdinopy [1.2.0|1.2.1|2.0.0][0m would require - [32mpython 3.4* [0m, which can be installed; - [32mdinopy [1.2.0|1.2.1|2.0.0|2.0.1][0m would require - [32mpython [3.5* |>=3.5,<3.6.0a0 ][0m, which can be installed; - [32mdinopy 2.0.0[0m would require - [32mpython 3.6* [0m, which can be installed; - [32mdinopy [2.0.0|2.0.1|2.0.2|2.0.3][0m would require - [32mpython >=3.6,<3.7.0a0 [0m, which can be installed; - [32mdinopy [2.0.1|2.0.2|2.0.3][0m would require - [32mpython >=3.7,<3.8.0a0 [0m, which can be installed; - [32mdinopy [2.1.0|2.2.0|2.2.1][0m would require - [32mpython_abi 3.6.* *_cp36m[0m, which can be installed; - [32mdinopy [2.1.0|2.2.0|2.2.1][0m would require - [32mpython_abi 3.7.* *_cp37m[0m, which can be installed; - [32mdinopy [2.2.0|2.2.1|3.0.0][0m would require - [32mpython_abi 3.8.* *_cp38[0m, which can be installed; - [32mdinopy [2.2.0|2.2.1|3.0.0][0m would require - [32mpython_abi 3.9.* *_cp39[0m, which can be installed; - [32mdinopy [2.2.1|3.0.0][0m would require - [32mpython_abi 3.10.* *_cp310[0m, which can be installed; - [31mpython_abi 3.12.* *_cp312[0m is not installable because it requires - [31mpython 3.12.* *_cpython[0m, which conflicts with any installable versions previously reported. - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/opt/conda/bin/conda-build", line 11, in - sys.exit(execute()) - File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 590, in execute - api.build( - File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build - return build_tree( - File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3638, in build_tree - packages_from_this = build( - File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2409, in build - create_build_envs(top_level_pkg, notest) - File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2247, in create_build_envs - raise e - File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2220, in create_build_envs - environ.get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 937, in get_install_actions - precs = get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 937, in get_install_actions - precs = get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 937, in get_install_actions - precs = get_package_records( - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions - precs = _install_actions(prefix, index, specs)["LINK"] - File "/opt/conda/lib/python3.10/site-packages/conda_build/environ.py", line 1301, in install_actions - txn = solver.solve_for_transaction(prune=False, ignore_pinned=False) - File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 153, in solve_for_transaction - unlink_precs, link_precs = self.solve_for_diff( - File "/opt/conda/lib/python3.10/site-packages/conda/core/solve.py", line 222, in solve_for_diff - final_precs = self.solve_final_state( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state - out_state = self._solving_loop(in_state, out_state, index) - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop - solved = self._solve_attempt(in_state, out_state, index, attempt=attempt) - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt - new_conflicts = self._maybe_raise_for_problems( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/conda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("python=3.4"), MatchSpec("dinopy==1.2.0=py34_0")} - Encountered problems while solving: - - package dinopy-1.2.0-py34_0 requires python 3.4*, but none of the providers can be installed - - Could not solve for environment specs - The following packages are incompatible - [32mdinopy[0m is installable with the potential options - [32mdinopy [1.2.0|1.2.1|2.0.0][0m would require - [32mpython 3.4* [0m, which can be installed; - [32mdinopy [1.2.0|1.2.1|2.0.0|2.0.1][0m would require - [32mpython [3.5* |>=3.5,<3.6.0a0 ][0m, which can be installed; - [32mdinopy 2.0.0[0m would require - [32mpython 3.6* [0m, which can be installed; - [32mdinopy [2.0.0|2.0.1|2.0.2|2.0.3][0m would require - [32mpython >=3.6,<3.7.0a0 [0m, which can be installed; - [32mdinopy [2.0.1|2.0.2|2.0.3][0m would require - [32mpython >=3.7,<3.8.0a0 [0m, which can be installed; - [32mdinopy [2.1.0|2.2.0|2.2.1][0m would require - [32mpython_abi 3.6.* *_cp36m[0m, which can be installed; - [32mdinopy [2.1.0|2.2.0|2.2.1][0m would require - [32mpython_abi 3.7.* *_cp37m[0m, which can be installed; - [32mdinopy [2.2.0|2.2.1|3.0.0][0m would require - [32mpython_abi 3.8.* *_cp38[0m, which can be installed; - [32mdinopy [2.2.0|2.2.1|3.0.0][0m would require - [32mpython_abi 3.9.* *_cp39[0m, which can be installed; - [32mdinopy [2.2.1|3.0.0][0m would require - [32mpython_abi 3.10.* *_cp310[0m, which can be installed; - [31mpython_abi 3.12.* *_cp312[0m is not installable because it requires - [31mpython 3.12.* *_cpython[0m, which conflicts with any installable versions previously reported. -# Last 100 lines of the build log. diff --git a/recipes/simlord/build_failure.osx-64.yaml b/recipes/simlord/build_failure.osx-64.yaml deleted file mode 100644 index 3352a290b2588..0000000000000 --- a/recipes/simlord/build_failure.osx-64.yaml +++ /dev/null @@ -1,104 +0,0 @@ -recipe_sha: 231643e4137f1ea54da1960fde70610dac7481c5b7d8fc0c478ccb3d3ca0c4b3 # The hash of the recipe's meta.yaml at which this recipe failed to build. -skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above. -log: |- - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("dinopy==1.2.0=py34_0"), MatchSpec("python=3.4")} - Encountered problems while solving: - - package dinopy-1.2.0-py34_0 requires python 3.4*, but none of the providers can be installed - - Could not solve for environment specs - The following packages are incompatible - dinopy is installable with the potential options - dinopy [1.2.0|1.2.1|2.0.0] would require - python 3.4* , which can be installed; - dinopy [1.2.0|1.2.1|2.0.0|2.0.1] would require - python [3.5* |>=3.5,<3.6.0a0 ], which can be installed; - dinopy 2.0.0 would require - python 3.6* , which can be installed; - dinopy [2.0.0|2.0.1|2.0.2|2.0.3] would require - python >=3.6,<3.7.0a0 , which can be installed; - dinopy [2.0.1|2.0.2|2.0.3] would require - python >=3.7,<3.8.0a0 , which can be installed; - dinopy [2.1.0|2.2.0|2.2.1] would require - python_abi 3.6.* *_cp36m, which can be installed; - dinopy [2.1.0|2.2.0|2.2.1] would require - python_abi 3.7.* *_cp37m, which can be installed; - dinopy [2.2.0|2.2.1|3.0.0] would require - python_abi 3.8.* *_cp38, which can be installed; - dinopy [2.2.0|2.2.1|3.0.0] would require - python_abi 3.9.* *_cp39, which can be installed; - dinopy [2.2.1|3.0.0] would require - python_abi 3.10.* *_cp310, which can be installed; - python >=3.11,<3.12.0a0 is not installable because it requires - python_abi 3.11.* *_cp311, which conflicts with any installable versions previously reported. - - During handling of the above exception, another exception occurred: - - Traceback (most recent call last): - File "/opt/mambaforge/envs/bioconda/bin/conda-build", line 11, in - sys.exit(execute()) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 590, in execute - api.build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build - return build_tree( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3638, in build_tree - packages_from_this = build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2409, in build - create_build_envs(top_level_pkg, notest) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2247, in create_build_envs - raise e - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2220, in create_build_envs - environ.get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 937, in get_install_actions - precs = get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 937, in get_install_actions - precs = get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 937, in get_install_actions - precs = get_package_records( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 891, in get_install_actions - precs = _install_actions(prefix, index, specs)["LINK"] - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/environ.py", line 1301, in install_actions - txn = solver.solve_for_transaction(prune=False, ignore_pinned=False) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda/core/solve.py", line 153, in solve_for_transaction - unlink_precs, link_precs = self.solve_for_diff( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda/core/solve.py", line 222, in solve_for_diff - final_precs = self.solve_final_state( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 223, in solve_final_state - out_state = self._solving_loop(in_state, out_state, index) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 303, in _solving_loop - solved = self._solve_attempt(in_state, out_state, index, attempt=attempt) - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 414, in _solve_attempt - new_conflicts = self._maybe_raise_for_problems( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 712, in _maybe_raise_for_problems - self._maybe_raise_for_conda_build( - File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_libmamba_solver/solver.py", line 805, in _maybe_raise_for_conda_build - raise exc - conda_libmamba_solver.conda_build_exceptions.ExplainedDependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("dinopy==1.2.0=py34_0"), MatchSpec("python=3.4")} - Encountered problems while solving: - - package dinopy-1.2.0-py34_0 requires python 3.4*, but none of the providers can be installed - - Could not solve for environment specs - The following packages are incompatible - dinopy is installable with the potential options - dinopy [1.2.0|1.2.1|2.0.0] would require - python 3.4* , which can be installed; - dinopy [1.2.0|1.2.1|2.0.0|2.0.1] would require - python [3.5* |>=3.5,<3.6.0a0 ], which can be installed; - dinopy 2.0.0 would require - python 3.6* , which can be installed; - dinopy [2.0.0|2.0.1|2.0.2|2.0.3] would require - python >=3.6,<3.7.0a0 , which can be installed; - dinopy [2.0.1|2.0.2|2.0.3] would require - python >=3.7,<3.8.0a0 , which can be installed; - dinopy [2.1.0|2.2.0|2.2.1] would require - python_abi 3.6.* *_cp36m, which can be installed; - dinopy [2.1.0|2.2.0|2.2.1] would require - python_abi 3.7.* *_cp37m, which can be installed; - dinopy [2.2.0|2.2.1|3.0.0] would require - python_abi 3.8.* *_cp38, which can be installed; - dinopy [2.2.0|2.2.1|3.0.0] would require - python_abi 3.9.* *_cp39, which can be installed; - dinopy [2.2.1|3.0.0] would require - python_abi 3.10.* *_cp310, which can be installed; - python >=3.11,<3.12.0a0 is not installable because it requires - python_abi 3.11.* *_cp311, which conflicts with any installable versions previously reported. -# Last 100 lines of the build log. diff --git a/recipes/simlord/meta.yaml b/recipes/simlord/meta.yaml index 1da662c285efb..3e3664246012b 100644 --- a/recipes/simlord/meta.yaml +++ b/recipes/simlord/meta.yaml @@ -1,17 +1,22 @@ +{% set name = "simlord" %} +{% set version = "1.0.4" %} + package: - name: simlord - version: "1.0.4" + name: {{ name }} + version: {{ version }} source: - url: https://files.pythonhosted.org/packages/b7/41/0deb50e6d2b003799371dda32a2b81d254e5b665f8435c75d656a7d6d080/simlord-1.0.4.zip + url: https://files.pythonhosted.org/packages/b7/41/0deb50e6d2b003799371dda32a2b81d254e5b665f8435c75d656a7d6d080/simlord-{{ version }}.zip sha256: 8f3f018da10b91ad865c602eb3926513dcdbfd3b0108f5d5006aee4bca4a74b6 build: - number: 4 - skip: True # [py2k] + number: 5 + skip: True # [py2k or py>=311] script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv entry_points: - simlord = simlord.simlord:main + run_exports: + {{ pin_subpackage(name, max_pin="x") }} requirements: build: @@ -22,7 +27,7 @@ requirements: - cython run: - python - - numpy + - numpy <2 - scipy - pysam >=0.8.4 - dinopy @@ -38,3 +43,7 @@ about: home: https://bitbucket.org/genomeinformatics/simlord/ license: MIT License summary: 'SimLoRD is a read simulator for long reads from third generation sequencing. Currently, it supports the Pacific Biosciences SMRT error model.' + +extra: + additional-platforms: + - linux-aarch64