From 71bb1b98d2f34dae9e585fbed2647a02e520f001 Mon Sep 17 00:00:00 2001
From: aliciaaevans <alicia.evans@nih.gov>
Date: Fri, 7 Jun 2024 16:13:28 -0400
Subject: [PATCH] workflow for testing bulk failures

---
 .github/workflows/Bulk-PR.yml | 79 +++++++++++++++++++++++++++++++++++
 azure-pipeline.yml            |  3 ++
 2 files changed, 82 insertions(+)
 create mode 100644 .github/workflows/Bulk-PR.yml

diff --git a/.github/workflows/Bulk-PR.yml b/.github/workflows/Bulk-PR.yml
new file mode 100644
index 0000000000000..a35f2144c2c15
--- /dev/null
+++ b/.github/workflows/Bulk-PR.yml
@@ -0,0 +1,79 @@
+name: PR to Bulk branch
+on:
+  pull_request:
+    branches:
+      - bulk
+    types: [opened, synchronize, reopened]
+
+concurrency:
+  group: build-${{ github.event.pull_request.number || github.head_ref }}
+  cancel-in-progress: true
+
+jobs:
+  build_and_test-osx:
+    name: Bulk PR OSX
+    runs-on: macos-13 # amd64
+    strategy:
+      fail-fast: true
+      max-parallel: 13
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: set path
+        run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH
+
+      - name: Fetch conda install script
+        run: |
+          wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh
+
+      - name: Set up bioconda-utils
+        run: bash install-and-set-up-conda.sh
+
+      - name: Configure conda
+        run: bash configure-conda.sh
+
+      - name: Build and Test
+        env:
+          # Mimic circleci
+          OSTYPE: "darwin"
+          CI: "true"
+        run: |
+          set -e
+          eval "$(conda shell.bash hook)"
+          conda activate bioconda
+
+          # Clean up lingering build artifacts
+          rm -f /opt/mambaforge/envs/bioconda/conda-bld/osx-64/*.tar.bz2
+
+          # The SDK isn't actually cached, so reinstall it
+          run_conda_forge_build_setup
+
+          if [ -z "$GITHUB_BASE_REF" ] ; then
+              export GITHUB_BASE_REF="bulk"
+          fi
+          git fetch origin "$GITHUB_BASE_REF"
+
+          bioconda-utils build recipes config.yml \
+            --lint \
+            --git-range origin/"$GITHUB_BASE_REF" HEAD
+
+      - name: Prepare artifacts
+        run: |
+              (
+              rm -rf /tmp/artifacts
+              mkdir -p /tmp/artifacts/packages
+              cd /opt/mambaforge/envs/bioconda/conda-bld || exit 0
+              find -name .cache | xargs rm -rf || true
+              for n in index.html channeldata.json osx-64 noarch; do
+                cp -rv $n /tmp/artifacts/packages || true
+              done
+              ) || true
+
+      - name: Archive packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: osx-64-packages
+          path: |
+            /tmp/artifacts
\ No newline at end of file
diff --git a/azure-pipeline.yml b/azure-pipeline.yml
index f7d6b429615d6..4e852bb53f2a3 100644
--- a/azure-pipeline.yml
+++ b/azure-pipeline.yml
@@ -1,4 +1,7 @@
 pr:
+  branches:
+    exclude:
+      - bulk
   autoCancel: true
 trigger:
   branches: