From 6f9b47fba409212d01cbc9a851f131446dd9f214 Mon Sep 17 00:00:00 2001
From: Parham Kazemi <pkazemi3@gmail.com>
Date: Mon, 4 Nov 2024 14:24:21 -0800
Subject: [PATCH] Add ntStat (#51897)

* Create meta.yaml

* Create build.sh

* Update meta.yaml

* Rename ntstat/build.sh to recipes/ntstat/build.sh

* Rename ntstat/meta.yaml to recipes/ntstat/meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update build.sh
---
 recipes/ntstat/build.sh  |  6 +++++
 recipes/ntstat/meta.yaml | 50 ++++++++++++++++++++++++++++++++++++++++
 2 files changed, 56 insertions(+)
 create mode 100644 recipes/ntstat/build.sh
 create mode 100644 recipes/ntstat/meta.yaml

diff --git a/recipes/ntstat/build.sh b/recipes/ntstat/build.sh
new file mode 100644
index 0000000000000..4fa9d5a8b56ec
--- /dev/null
+++ b/recipes/ntstat/build.sh
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY"
+
+meson setup --buildtype release --prefix=$PREFIX build
+meson install -C build
diff --git a/recipes/ntstat/meta.yaml b/recipes/ntstat/meta.yaml
new file mode 100644
index 0000000000000..b68ab46df1dd5
--- /dev/null
+++ b/recipes/ntstat/meta.yaml
@@ -0,0 +1,50 @@
+{% set version = "1.0.0" %}
+
+package:
+  name: ntstat
+  version: {{ version }}
+
+source:
+  url: https://github.com/bcgsc/ntStat/releases/download/v{{ version }}/ntStat-{{ version }}.tar.gz
+  sha256: cbdf691033727466aaa774c5b9a7fc549448280b53f59579d1a43d9e943f9abd
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('ntstat', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - meson
+    - meson-python
+    - cmake
+    - python
+  host:
+    - python
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
+    - btllib >=1.7.2
+    - cpp-argparse
+    - cpp-tabulate
+    - indicators
+    - pybind11
+  run:
+    - python
+    - ntcard
+    - btllib >=1.7.2
+    - matplotlib-base
+    - numpy
+    - scipy
+    - tabulate
+
+test:
+  commands:
+    - ntstat --version
+    - ntstat count --help
+
+about:
+  home: https://github.com/bcgsc/ntStat
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: 'a toolkit for statistical analysis of k-mer frequency and depth'