From 2910e8933e0c80399546ebfc76322d69531ad59f Mon Sep 17 00:00:00 2001
From: Bioconda Bot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 5 Dec 2024 17:07:53 -0500
Subject: [PATCH] Update mashpit to 0.9.8 (#52611)

* Update mashpit to 0.9.8

* add setuptools

* fix typo

* pin numpy to <2

* Update mashpit to 0.9.8

* Update meta.yaml

---------

Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
---
 recipes/mashpit/meta.yaml | 20 ++++++++++++--------
 1 file changed, 12 insertions(+), 8 deletions(-)

diff --git a/recipes/mashpit/meta.yaml b/recipes/mashpit/meta.yaml
index 299fe006c885d..47c41dd198e5c 100644
--- a/recipes/mashpit/meta.yaml
+++ b/recipes/mashpit/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.9.7" %}
+{% set version = "0.9.8" %}
 
 package:
   name: mashpit
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/tongzhouxu/mashpit/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 4f93e00f8ff5cdb1eb81bc5cf01db824dbb8f54e67dbe9aab910b21fdd38fbed
+  sha256: 3c5fee1971a375197eaf7f79c959abdb5dda44dc4362a259a907b0cd70b2c1d9
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
   number: 0
+  entry_points:
+    - mashpit = mashpit.mashpit:main
   run_exports:
     - {{ pin_subpackage("mashpit", max_pin="x.x") }}
 
@@ -19,15 +21,16 @@ requirements:
   host:
     - python >=3.8
     - pip
+    - setuptools
   run:
-    - biopython =1.78
-    - dask >=2024.1
-    - flask >=3.0
+    - biopython >=1.83
+    - dask-core >=2024.1
+    - flask >=3.0.3
     - ncbi-datasets-cli >=16.10
     - ncbi-datasets-pylib >=16.6.0
-    - numpy >=1.19.5
+    - numpy <2.0.0
     - python >=3.8
-    - pandas >=1.1.5
+    - pandas >=2.0.3
     - requests
     - scikit-bio
     - scipy >=1.0
@@ -35,6 +38,7 @@ requirements:
     - sourmash >=4.6.1
     - tqdm
     - phytreeviz
+    - psutil
 
 test:
   commands:
@@ -45,5 +49,5 @@ about:
   license: "GPL-2.0-or-later"
   license_family: GPL2
   license_file: LICENSE
-  summary: Sketch-based surveillance platform
+  summary: "Sketch-based surveillance platform."
   dev_url: https://github.com/tongzhouxu/mashpit