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<meta name="description" content=" Bio4j is a bioinformatics graph data platform, integrating most data available in Uniprot KB (SwissProt + Trembl), Gene Ontology ...">
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<h2>bio data graph db</h2>
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<p>Bio4j is a bioinformatics graph data platform, integrating most data available in <a href="http://www.uniprot.org/"><strong>Uniprot KB</strong></a> (SwissProt + Trembl), <a href="http://www.geneontology.org/"><strong>Gene Ontology</strong></a> (GO), <a href="http://www.ebi.ac.uk/uniref/"><strong>UniRef</strong></a> (50,90,100), <a href="http://www.ncbi.nlm.nih.gov/Taxonomy/"><strong>NCBI Taxonomy</strong></a>, and <a href="http://enzyme.expasy.org/"><strong>Expasy Enzyme DB</strong></a>. </p>
<p>Bio4j provides a completely new and powerful <strong>framework for protein related information querying and management</strong>.
The use of a graph-based data model makes possible to store and query data in a way that semantically represents its own structure. On the contrary, traditional relational models and databases must flatten the data they represent into tables, creating <em>artificial</em> ids in order to connect the different tuples; which can in some cases eventually lead to domain models that have almost nothing to do with the actual structure of data.</p>
<p>For more, go to <a href="https://github.com/bio4j/bio4j">bio4j/bio4j</a> at GitHub.</p>
<h2>Community and contact</h2>
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<p>Bio4j is an <strong>open source</strong> platform released under the <strong><a href="http://www.gnu.org/licenses/agpl.html">AGPLv3</a></strong> license.</p>
<h2>Citing Bio4j</h2>
<p><strong>Bio4j: a high-performance cloud-enabled graph-based data platform.</strong> <br /> Pablo Pareja-Tobes, Raquel Tobes, Marina Manrique, Eduardo Pareja, Eduardo Pareja-Tobes <br /> <em>bioRxiv</em> – <strong>doi</strong> <a href="http://dx.doi.org/10.1101/016758">10.1101/016758</a></p>
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