DESCRIPTION

Package: NetCoMi
Type: Package
Title: Network Construction and Comparison for Microbiome Data
Version: 1.1.0
Author: Stefanie Peschel [aut, cre]
Maintainer: Stefanie Peschel <stefpeschel@gmail.com>
Description: NetCoMi offers functions for constructing, analyzing, and comparing 
    microbial association networks as well as dissimilarity-based networks for 
    microbial compositional data. It also includes functionality for 
    constructing differential association networks.
License: GPL-3 + file LICENSE
Depends: SpiecEasi (>= 1.0.6)
Imports: 
    Biobase,
    corrplot,
    doSNOW,
    fdrtool,
    filematrix,
    foreach,
    graphics,
    grDevices,
    gtools,
    huge,
    igraph,
    MASS,
    Matrix,
    mixedCCA (>= 1.6.2),
    orca,
    phyloseq,
    pulsar,
    qgraph,
    RColorBrewer,
    Rdpack,
    rlang,
    SPRING,
    stats,
    utils,
    vegan,
    WGCNA
Remotes: 
    bioc::Biobase,
    bioc::phyloseq, 
    github::zdk123/SpiecEasi,
    github::GraceYoon/SPRING
Suggests:
    BiocManager,
    cccd,
    ccrepe,
    DESeq2,
    discordant,
    LaplacesDemon,
    limma,
    metagenomeSeq,
    metagMisc,
    propr,
    testthat,
    zCompositions
RdMacros: Rdpack
Encoding: UTF-8
RoxygenNote: 7.2.2