diff --git a/infrastructure/systems/GNU-Parallel/nlp/.gitignore b/infrastructure/systems/GNU-Parallel/nlp/.gitignore new file mode 100644 index 00000000..f72f5fdc --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/.gitignore @@ -0,0 +1,2 @@ +inputs/ +outputs/ diff --git a/infrastructure/systems/GNU-Parallel/nlp/cleanup.sh b/infrastructure/systems/GNU-Parallel/nlp/cleanup.sh new file mode 100755 index 00000000..8ed5294c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/cleanup.sh @@ -0,0 +1,6 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" + +rm -rf ./inputs +rm -rf ./outputs diff --git a/infrastructure/systems/GNU-Parallel/nlp/deps.sh b/infrastructure/systems/GNU-Parallel/nlp/deps.sh new file mode 100755 index 00000000..6d9c19ef --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/deps.sh @@ -0,0 +1 @@ +# This benchmark does not have any dependencies. diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/61-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/61-0.txt.input.bigrams.hash new file mode 100644 index 00000000..680e2c8e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/61-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +131868265e5adaccdbed4c5b886bd3c47e10c3f6ad454b3bb434f2a8df402936 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/61.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/61.txt.input.bigrams.hash new file mode 100644 index 00000000..7c3009af --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/61.txt.input.bigrams.hash @@ -0,0 +1 @@ +eb7075de2cd4fbd44de8f205ce23b4732573398f2f227c2e36b47b64a13aa12a diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/655.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/655.txt.input.bigrams.hash new file mode 100644 index 00000000..d0f0c454 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/655.txt.input.bigrams.hash @@ -0,0 +1 @@ +41b7da8bc8ac92204771b2a748a361b83913ebb589d34b11b1a762205190459e diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/660.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/660.txt.input.bigrams.hash new file mode 100644 index 00000000..964b95e2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/660.txt.input.bigrams.hash @@ -0,0 +1 @@ +f39669a8a286d8d787094318cb834998f19ff5737b336dfebb9e01f02b1a7141 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/665.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/665.txt.input.bigrams.hash new file mode 100644 index 00000000..aa4b7336 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/665.txt.input.bigrams.hash @@ -0,0 +1 @@ +39713701130b64bc0198034c83f7f1f9f4acb494c9ad8ef6e04174f5531966ea diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/666.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/666.txt.input.bigrams.hash new file mode 100644 index 00000000..564961b0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/666.txt.input.bigrams.hash @@ -0,0 +1 @@ +28c293a0740c6561bdd55ed3879535e81a6b3fbaee45dfb30dcbf869c7ac57de diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6660.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6660.txt.input.bigrams.hash new file mode 100644 index 00000000..bdccb4fe --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6660.txt.input.bigrams.hash @@ -0,0 +1 @@ +8a16861f652464b7dbb9d70caaa51031a9471494cd0d69faa44f9f1757777352 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66600-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66600-0.txt.input.bigrams.hash new file mode 100644 index 00000000..5cc7185d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66600-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +80adc52ae3eb9dd0cf32195d26467cd47bd8b01c93a3cb2e7fd850988207ed49 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66601-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66601-0.txt.input.bigrams.hash new file mode 100644 index 00000000..938a2a56 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66601-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +81b27815b0425556f4f64aa4f5bef0e0d03ea42e05e3ee04da3b16a1b0d84651 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66602-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66602-0.txt.input.bigrams.hash new file mode 100644 index 00000000..3b628930 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66602-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +d251d562f730076ac248315690ffffdf51532822384571fd2e8ef6fa17e15e80 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66603-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66603-0.txt.input.bigrams.hash new file mode 100644 index 00000000..000313f3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66603-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +c5d73c0826816589af9fa9f84df52cc479706c9d0fe7308425217da885c4f301 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66604-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66604-0.txt.input.bigrams.hash new file mode 100644 index 00000000..decd1c16 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66604-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +41a5294a7d9eba06d9f6d47e8c856dca5fafc16c99b415dc2ca020b18a471177 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66605-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66605-0.txt.input.bigrams.hash new file mode 100644 index 00000000..3237b630 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66605-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +b3ee99f120aae6f011cc68cffb3fe8b5316c101e2571e9a6e515d7d8542a92ed diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66606-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66606-0.txt.input.bigrams.hash new file mode 100644 index 00000000..e84a34d5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66606-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +105385f14474222b05f3ff509088564ce07adaa90427efcda38e70637e44b03d diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66607-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66607-0.txt.input.bigrams.hash new file mode 100644 index 00000000..8e373245 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66607-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +86226355d657f868321f5113117c686ec22fdc305b5fd80a19805a66713ec6a3 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66608-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66608-0.txt.input.bigrams.hash new file mode 100644 index 00000000..651b3187 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66608-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +5769dd3c032cad7c45eb1cd712edaacaf129080a9b253f1fb62f910b632c9337 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66609-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66609-0.txt.input.bigrams.hash new file mode 100644 index 00000000..a5cdd339 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66609-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +a44b6cb6fd276331c7fa6ede3b139738369203fb1e354c61a0b81a5a44ba6ed8 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6661.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6661.txt.input.bigrams.hash new file mode 100644 index 00000000..c04a455d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6661.txt.input.bigrams.hash @@ -0,0 +1 @@ +89c2fdff7a23f1de34833bcc2707d4531586a37ee7cc5806142bd098e442dfe5 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6662.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6662.txt.input.bigrams.hash new file mode 100644 index 00000000..bc1ab7e7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/6662.txt.input.bigrams.hash @@ -0,0 +1 @@ +19c83c20f11867548924db21b4c4d54a1b18b06a9643f1995c5b84fe02bd8dfc diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66620-0.txt.input.bigrams.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66620-0.txt.input.bigrams.hash new file mode 100644 index 00000000..d66e17b3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66620-0.txt.input.bigrams.hash @@ -0,0 +1 @@ +a8393490126d3c73451e538a99c08eaf78950eb4492946d257e0132b6ba404bf diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/bigrams/66621-0.txt.input.bigrams.hash 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b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/666.txt.hash @@ -0,0 +1 @@ +97bd82cb879b6201557916afca89aca29c927b36f42a424c1c816571d36ef5d6 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/manif11.txt.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/manif11.txt.hash new file mode 100644 index 00000000..608e6a36 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/manif11.txt.hash @@ -0,0 +1 @@ +8cba6e7f09550264b555e39ed1cf16f86755ed909d7cba884ce90ad7cbc171b8 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/manif12.txt.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/manif12.txt.hash new file mode 100644 index 00000000..0c150a36 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/manif12.txt.hash @@ -0,0 +1 @@ +f9917fe679a8ce869b68b3f82fd67ef43ac8038c6bcf6f83d45f7bb1e69e3ee7 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgw050mo.txt.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgw050mo.txt.hash new file mode 100644 index 00000000..8a32cc07 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgw050mo.txt.hash @@ -0,0 +1 @@ +155b8cfb80d0acfd83f1471ddaa8447ecc876a7511e339003d116b810c1f8040 diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgw050pq.txt.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgw050pq.txt.hash new file mode 100644 index 00000000..299dc853 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgw050pq.txt.hash @@ -0,0 +1 @@ +af8c12e8152b48230531d9c27f940fd1477372ec80f336a43b0586efbd8bd91a diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgwmo04.txt.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgwmo04.txt.hash new file mode 100644 index 00000000..ccd0bb48 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgwmo04.txt.hash @@ -0,0 +1 @@ +0a0156a7afe5962fd320f6522775d4cac7f65e843b190c85b01c21b3b66eee8a diff --git a/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgwpq04.txt.hash b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgwpq04.txt.hash new file mode 100644 index 00000000..549f16f5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/hashes/small/words_no_vowels/pgwpq04.txt.hash @@ -0,0 +1 @@ +c400cb546e24db66e3ca683e86171c29ec0a3de354f22d2f312700e8f290e7a8 diff --git a/infrastructure/systems/GNU-Parallel/nlp/input.sh b/infrastructure/systems/GNU-Parallel/nlp/input.sh new file mode 100755 index 00000000..f625b272 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/input.sh @@ -0,0 +1,51 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +mkdir -p inputs +cd inputs + +if [ ! -f ./book_links.txt ]; then + wget -O book_links.txt "https://atlas-group.cs.brown.edu/data/gutenberg/books.txt" + if [ ! -f book_links.txt ]; then + echo "Failed to download book_links.txt" + exit 1 + fi +fi + +if [ ! -f ./genesis ]; then + curl -sf https://atlas-group.cs.brown.edu/data/gutenberg/8/0/0/8001/8001.txt > genesis +fi + +if [ ! -f ./exodus ]; then + curl -sf https://atlas-group.cs.brown.edu/data/gutenberg/3/3/4/2/33420/33420-0.txt > exodus +fi + +if [ ! -e ./pg ]; then + mkdir pg + cd pg + book_count=120 + + head -n $book_count ../book_links.txt | while IFS= read -r line + do + full_url="https://atlas-group.cs.brown.edu/data/gutenberg/${line}" + echo "Downloading $full_url" + wget -q "$full_url" + done + + cd .. +fi + +if [ ! -e ./pg-small ]; then + mkdir pg-small + cd pg-small + book_count=10 + + head -n $book_count ../book_links.txt | while IFS= read -r line + do + full_url="https://atlas-group.cs.brown.edu/data/gutenberg/${line}" + echo "Downloading $full_url" + wget -q "$full_url" + done + + cd .. +fi diff --git a/infrastructure/systems/GNU-Parallel/nlp/run.sh b/infrastructure/systems/GNU-Parallel/nlp/run.sh new file mode 100755 index 00000000..21d67bc4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/run.sh @@ -0,0 +1,58 @@ +#!/bin/bash --posix + +export SUITE_DIR=$(realpath $(dirname "$0")) +export TIMEFORMAT=%R +cd "$SUITE_DIR" + +if [[ "$1" == "--small" ]]; then + export ENTRIES=10 + export IN="$SUITE_DIR/inputs/pg-small" +else + export ENTRIES=120 + export IN="$SUITE_DIR/inputs/pg" +fi + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} + +mkdir -p "outputs" + +# Define the script names in a single variable +script_names="syllable_words_1 +syllable_words_2 +letter_words +bigrams_appear_twice +bigrams +compare_exodus_genesis +count_consonant_seq +count_morphs +count_trigrams +count_vowel_seq +count_words +find_anagrams +merge_upper +sort +sort_words_by_folding +sort_words_by_num_of_syllables +sort_words_by_rhyming +trigram_rec +uppercase_by_token +uppercase_by_type +verses_2om_3om_2instances +vowel_sequencies_gr_1K +words_no_vowels" + +mkdir -p "outputs" + +echo "Executing nlp $(date)" + +# Loop through each script name from the variable +while IFS= read -r script; do + script_file="./scripts/$script.sh" + output_dir="./outputs/$script/" + + mkdir -p "$output_dir" + + echo "$script" + $BENCHMARK_SHELL "$script_file" "$output_dir" + echo "$?" +done <<< "$script_names" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/bigrams.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/bigrams.sh new file mode 100755 index 00000000..eba48fa6 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/bigrams.sh @@ -0,0 +1,55 @@ +#!/bin/bash +# tag: bigrams.sh +# set -e + +# Bigrams (contrary to our version, this uses intermediary files) +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/4_3/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# pure_func() { +# input=$1 +# TEMPDIR=$(mktemp -d) +# cat > ${TEMPDIR}/${input}.input.words +# tail +2 ${TEMPDIR}/${input}.input.words > ${TEMPDIR}/${input}.input.nextwords +# paste ${TEMPDIR}/${input}.input.words ${TEMPDIR}/${input}.input.nextwords +# rm -rf ${TEMPDIR} +# } +# export -f pure_func + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$"| pure_func $input| sort | uniq -c > ${OUT}/${input}.input.bigrams.out +# done + +# echo 'done'; +# rm -rf ${OUT} + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/4_3/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + IN_DIR=$2 + OUT_DIR=$3 + TEMPDIR=$(mktemp -d) + + # Process the input file + cat "$IN_DIR/$input" | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" > ${TEMPDIR}/${input}.input.words + tail +2 ${TEMPDIR}/${input}.input.words > ${TEMPDIR}/${input}.input.nextwords + paste ${TEMPDIR}/${input}.input.words ${TEMPDIR}/${input}.input.nextwords | sort | uniq -c > "$OUT_DIR/${input}.input.bigrams.out" + + # Cleanup temporary directory + rm -rf ${TEMPDIR} +} +export -f pure_func + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" pure_func {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/bigrams_appear_twice.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/bigrams_appear_twice.sh new file mode 100755 index 00000000..c54d889f --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/bigrams_appear_twice.sh @@ -0,0 +1,57 @@ +# #!/bin/bash +# # tag: bigrams_appear_twice.sh +# # set -e + +# # Calculate the bigrams (based on 4_3.sh script) +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/8.2_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# pure_func() { +# input=$1 +# TEMPDIR=$(mktemp -d) +# cat > ${TEMPDIR}/${input}.input.words +# tail +2 ${TEMPDIR}/${input}.input.words > ${TEMPDIR}/${input}.input.nextwords +# paste ${TEMPDIR}/${input}.input.words ${TEMPDIR}/${input}.input.nextwords | sort | uniq -c > ${TEMPDIR}/${input}.input.bigrams +# awk "\$1 == 2 {print \$2, \$3}" ${TEMPDIR}/${input}.input.bigrams +# rm -rf {TEMPDIR} +# } + +# export -f pure_func +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | pure_func $input > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +# Calculate the bigrams (based on 4_3.sh script) +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/8.2_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + IN=$2 + OUT=$3 + TEMPDIR=$(mktemp -d) + + cat "$IN/$input" | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" > "${TEMPDIR}/${input}.input.words" + tail +2 "${TEMPDIR}/${input}.input.words" > "${TEMPDIR}/${input}.input.nextwords" + paste "${TEMPDIR}/${input}.input.words" "${TEMPDIR}/${input}.input.nextwords" | sort | uniq -c > "${TEMPDIR}/${input}.input.bigrams" + awk '$1 == 2 {print $2, $3}' "${TEMPDIR}/${input}.input.bigrams" > "${OUT}/${input}.out" + + rm -rf "${TEMPDIR}" +} + +export -f pure_func + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" pure_func {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/compare_exodus_genesis.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/compare_exodus_genesis.sh new file mode 100755 index 00000000..cdd50f15 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/compare_exodus_genesis.sh @@ -0,0 +1,65 @@ +#!/bin/bash +# tag: compare_exodus_genesis.sh +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# INPUT2=${INPUT2:-$SUITE_DIR/inputs/exodus} +# OUT=${1:-$SUITE_DIR/outputs/8.3_3/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p $OUT + +# pure_func() { +# input=$1 +# input2=$2 +# TEMPDIR=$(mktemp -d) +# cat > ${TEMPDIR}/${input}1.types +# cat ${input2} | tr -sc '[A-Z][a-z]' '[\012*]' | sort -u > ${TEMPDIR}/${input}2.types +# sort ${TEMPDIR}/${input}1.types ${TEMPDIR}/${input}2.types ${TEMPDIR}/${input}2.types | uniq -c | head +# rm -rf ${TEMPDIR} +# } +# export -f pure_func + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort -u | pure_func $input $INPUT2 > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +#!/bin/bash +# Parallelized script for processing with two input sources + +IN=${IN:-$SUITE_DIR/inputs/pg} +INPUT2=${INPUT2:-$SUITE_DIR/inputs/exodus} +OUT=${1:-$SUITE_DIR/outputs/8.3_3/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + input_dir=$2 + input2=$3 + out_dir=$4 + TEMPDIR=$(mktemp -d) + + # Process input1 + cat "$input_dir/$input" | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort -u > "${TEMPDIR}/${input}1.types" + + # Process input2 + cat "$input2" | tr -sc '[A-Z][a-z]' '[\012*]' | sort -u > "${TEMPDIR}/${input}2.types" + + # Combine and count types + sort "${TEMPDIR}/${input}1.types" "${TEMPDIR}/${input}2.types" "${TEMPDIR}/${input}2.types" | uniq -c | head > "${out_dir}/${input}.out" + + # Cleanup + rm -rf "${TEMPDIR}" +} +export -f pure_func + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" pure_func {} "${IN}" "${INPUT2}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/count_consonant_seq.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_consonant_seq.sh new file mode 100755 index 00000000..07a905f0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_consonant_seq.sh @@ -0,0 +1,45 @@ +#!/bin/bash +# set -e +# tag: count_consonant_sequences + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/7_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr '[a-z]' '[A-Z]' | tr -sc 'BCDFGHJKLMNPQRSTVWXYZ' '[\012*]' | sort | uniq -c > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf ${OUT} + +#!/bin/bash +# Parallelized script for processing input files + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/7_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr '[a-z]' '[A-Z]' | + tr -sc 'BCDFGHJKLMNPQRSTVWXYZ' '[\012*]' | + sort | + uniq -c > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" + diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/count_morphs.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_morphs.sh new file mode 100755 index 00000000..b256ac68 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_morphs.sh @@ -0,0 +1,41 @@ +#!/bin/bash +# tag: count_morphs +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/7_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | sed 's/ly$/-ly/g' | sed 's/ .*//g' | sort | uniq -c > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf ${OUT} + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/7_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + sed 's/ly$/-ly/g' | + sed 's/ .*//g' | + sort | + uniq -c > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/count_trigrams.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_trigrams.sh new file mode 100755 index 00000000..23011219 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_trigrams.sh @@ -0,0 +1,66 @@ +#!/bin/bash +#tag: count_trigrams.sh +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/4_3b/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# pure_func() { +# input=$1 +# TEMPDIR=$(mktemp -d) +# cat > ${TEMPDIR}/${input}.words +# tail +2 ${TEMPDIR}/${input}.words > ${TEMPDIR}/${input}.nextwords +# tail +2 ${TEMPDIR}/${input}.words > ${TEMPDIR}/${input}.nextwords2 +# paste ${TEMPDIR}/${input}.words ${TEMPDIR}/${input}.nextwords ${TEMPDIR}/${input}.nextwords2 | +# sort | uniq -c +# rm -rf ${TEMPDIR} +# } +# export -f pure_func +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | pure_func $input > ${OUT}/${input}.trigrams +# done + +# echo 'done'; +# rm -rf ${OUT} + +#!/bin/bash +# Parallelized script for generating trigrams + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/4_3b/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + in_dir=$2 + out_dir=$3 + + TEMPDIR=$(mktemp -d) + + # Process the input + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" > "${TEMPDIR}/${input}.words" + + tail +2 "${TEMPDIR}/${input}.words" > "${TEMPDIR}/${input}.nextwords" + tail +2 "${TEMPDIR}/${input}.words" > "${TEMPDIR}/${input}.nextwords2" + + paste "${TEMPDIR}/${input}.words" "${TEMPDIR}/${input}.nextwords" "${TEMPDIR}/${input}.nextwords2" | + sort | + uniq -c > "${out_dir}/${input}.trigrams" + + # Cleanup + rm -rf "${TEMPDIR}" +} +export -f pure_func + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" pure_func {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/count_vowel_seq.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_vowel_seq.sh new file mode 100755 index 00000000..4a3912fd --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_vowel_seq.sh @@ -0,0 +1,41 @@ +#!/bin/bash +# tag: count_vowel_seq +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/2_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr 'a-z' '[A-Z]' | tr -sc 'AEIOU' '[\012*]'| sort | uniq -c > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/2_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr 'a-z' '[A-Z]' | + tr -sc 'AEIOU' '[\012*]' | + sort | + uniq -c > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/count_words.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_words.sh new file mode 100755 index 00000000..fa03c3db --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/count_words.sh @@ -0,0 +1,40 @@ +#!/bin/bash +# tag: count_words + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/1_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort | uniq -c > $1/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/1_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort | + uniq -c > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/find_anagrams.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/find_anagrams.sh new file mode 100755 index 00000000..12214904 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/find_anagrams.sh @@ -0,0 +1,46 @@ +#!/bin/bash +# tag: find_anagrams.sh +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/8.3_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# pure_func() { +# input=$1 +# TEMPDIR=$(mktemp -d) +# sort -u > ${TEMPDIR}/${input}.types +# rev < ${TEMPDIR}/${input}.types > ${TEMPDIR}/${input}.types.rev +# sort ${TEMPDIR}/${input}.types ${TEMPDIR}/${input}.types.rev | uniq -c | awk "\$1 >= 2 {print \$2}" +# rm -rf ${TEMPDIR} +# } + +# export -f pure_func +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | pure_func $input > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/8.3_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + TEMPDIR=$(mktemp -d) + sort -u > ${TEMPDIR}/${input}.types + rev < ${TEMPDIR}/${input}.types > ${TEMPDIR}/${input}.types.rev + sort ${TEMPDIR}/${input}.types ${TEMPDIR}/${input}.types.rev | uniq -c | awk "\$1 >= 2 {print \$2}" + rm -rf ${TEMPDIR} +} +export -f pure_func + +ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1 | \ + parallel -j "$(nproc)" "cat ${IN}/{} | tr -c 'A-Za-z' '[\n*]' | grep -v '^\s*$' | pure_func {} > ${OUT}/{}.out" + +echo 'done'; diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/letter_words.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/letter_words.sh new file mode 100755 index 00000000..bbfdf41b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/letter_words.sh @@ -0,0 +1,48 @@ +#!/bin/bash +# tag: four-letter words +# set -e + +# the original script has both versions +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | grep -c '^....$' > ${OUT}/${input}.out0 +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort -u | grep -c '^....$' > ${OUT}/${input}.out1 +# done + +# echo 'done'; +# rm -rf "$OUT" + + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + grep -c '^....$' > "${out_dir}/${input}.out0" + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort -u | + grep -c '^....$' > "${out_dir}/${input}.out1" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/merge_upper.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/merge_upper.sh new file mode 100755 index 00000000..68463d89 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/merge_upper.sh @@ -0,0 +1,42 @@ +#!/bin/bash +# tag: merge_upper +# set -e + +# Merge upper and lower counts +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/2_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr '[a-z]' '[A-Z]' | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort | uniq -c > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/2_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr '[a-z]' '[A-Z]' | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort | + uniq -c > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/sort.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort.sh new file mode 100755 index 00000000..6bb134b5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort.sh @@ -0,0 +1,43 @@ +#!/bin/bash +# tag: sort +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/3_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort | uniq -c | sort -nr > ${OUT}/${input}.out +# done + +# echo 'done'; +# # rm -rf "$OUT" + +#!/bin/bash + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/3_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort | + uniq -c | + sort -nr > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_folding.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_folding.sh new file mode 100755 index 00000000..73d5d148 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_folding.sh @@ -0,0 +1,41 @@ +#!/bin/bash +# tag: sort_words_by_folding +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/3_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort | uniq -c | sort -f > ${OUT}/${input} +# done + +# echo 'done'; +# rm -rf ${OUT} + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/3_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort | + uniq -c | + sort -f > "${out_dir}/${input}" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_num_of_syllables.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_num_of_syllables.sh new file mode 100755 index 00000000..ca6c3f8c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_num_of_syllables.sh @@ -0,0 +1,65 @@ +#!/bin/bash +# tag: sort_words_by_num_of_syllables +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/8.1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# pure_func() { +# input=$1 +# TEMPDIR=$(mktemp -d) +# cat > ${TEMPDIR}/${input}.words +# tr -sc '[AEIOUaeiou\012]' ' ' < ${TEMPDIR}/${input}.words | awk '{print NF}' > ${TEMPDIR}/${input}.syl +# paste ${TEMPDIR}/${input}.syl ${TEMPDIR}/${input}.words | sort -nr | sed 5q +# rm -rf ${TEMPDIR} +# } +# export -f pure_func +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort -u | pure_func $input > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" +#!/bin/bash +# Parallelized script for processing input files + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/8.1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + in_dir=$2 + out_dir=$3 + + TEMPDIR=$(mktemp -d) + cat > "${TEMPDIR}/${input}.words" + tr -sc '[AEIOUaeiou\012]' ' ' < "${TEMPDIR}/${input}.words" | awk '{print NF}' > "${TEMPDIR}/${input}.syl" + paste "${TEMPDIR}/${input}.syl" "${TEMPDIR}/${input}.words" | sort -nr | sed 5q > "${out_dir}/${input}.out" + rm -rf "${TEMPDIR}" +} +export -f pure_func + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort -u | + pure_func "$input" "$in_dir" "$out_dir" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_rhyming.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_rhyming.sh new file mode 100755 index 00000000..d2da63bf --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/sort_words_by_rhyming.sh @@ -0,0 +1,44 @@ +#!/bin/bash +# tag: sort_words_by_rhyming.sh +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/3_3/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort | uniq -c | rev | sort | rev > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/3_3/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort | + uniq -c | + rev | + sort | + rev > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/syllable_words_1.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/syllable_words_1.sh new file mode 100755 index 00000000..0ba1b2ff --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/syllable_words_1.sh @@ -0,0 +1,42 @@ +#!/bin/bash +# tag: 1-syllable words +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_4/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat ${IN}/${input} | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | grep -i '^[^aeiou]*[aeiou][^aeiou]*$' | sort | uniq -c | sed 5q > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_4/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + grep -i '^[^aeiou]*[aeiou][^aeiou]*$' | + sort | + uniq -c | + sed 5q > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/syllable_words_2.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/syllable_words_2.sh new file mode 100755 index 00000000..c613a7c9 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/syllable_words_2.sh @@ -0,0 +1,41 @@ +#!/bin/bash +# tag: 2-syllable words +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_5/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | grep -i '^[^aeiou]*[aeiou][^aeiou]*[aeiou][^aeiou]$' | sort | uniq -c | sed 5q > ${OUT}${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_5/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + grep -i '^[^aeiou]*[aeiou][^aeiou]*[aeiou][^aeiou]$' | + sort | + uniq -c | + sed 5q > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/trigram_rec.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/trigram_rec.sh new file mode 100755 index 00000000..4b850050 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/trigram_rec.sh @@ -0,0 +1,68 @@ +#!/bin/bash +# tag: trigram_rec +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# pure_func() { +# input=$1 +# TEMPDIR=$(mktemp -d) +# tr -sc '[A-Z][a-z]' '[\012*]' > ${TEMPDIR}/${input}.words +# tail +2 ${TEMPDIR}/${input}.words > ${TEMPDIR}/${input}.nextwords +# tail +3 ${TEMPDIR}/${input}.words > ${TEMPDIR}/${input}.nextwords2 +# paste ${TEMPDIR}/${input}.words ${TEMPDIR}/${input}.nextwords ${TEMPDIR}/${input}.nextwords2 | sort | uniq -c +# rm -rf ${TEMPDIR} +# } +# export -f pure_func + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | grep 'the land of' | pure_func ${input} | sort -nr | sed 5q > ${OUT}/${input}.0.out +# cat $IN/$input | grep 'And he said' | pure_func ${input} | sort -nr | sed 5q > ${OUT}/${input}.1.out +# done + +# echo 'done'; +# rm -rf "$OUT" + +#!/bin/bash +# Parallelized script for processing input files + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +pure_func() { + input=$1 + in_dir=$2 + out_dir=$3 + category=$4 + + TEMPDIR=$(mktemp -d) + tr -sc '[A-Z][a-z]' '[\012*]' > "${TEMPDIR}/${input}.words" + tail +2 "${TEMPDIR}/${input}.words" > "${TEMPDIR}/${input}.nextwords" + tail +3 "${TEMPDIR}/${input}.words" > "${TEMPDIR}/${input}.nextwords2" + paste "${TEMPDIR}/${input}.words" "${TEMPDIR}/${input}.nextwords" "${TEMPDIR}/${input}.nextwords2" | sort | uniq -c | sort -nr | sed 5q > "${out_dir}/${input}.${category}.out" + rm -rf "${TEMPDIR}" +} +export -f pure_func + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | grep 'the land of' | pure_func "$input" "$in_dir" "$out_dir" "0" + cat "$in_dir/$input" | grep 'And he said' | pure_func "$input" "$in_dir" "$out_dir" "1" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/uppercase_by_token.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/uppercase_by_token.sh new file mode 100755 index 00000000..8b7eaac3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/uppercase_by_token.sh @@ -0,0 +1,41 @@ +#!/bin/bash +# tag: uppercase_by_token +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_1_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | grep -c '^[A-Z]' > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf ${OUT} + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_1_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + grep -c '^[A-Z]' > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" + diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/uppercase_by_type.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/uppercase_by_type.sh new file mode 100755 index 00000000..6a52ba01 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/uppercase_by_type.sh @@ -0,0 +1,44 @@ +#!/bin/bash +# tag: uppercase_by_type +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_1_2/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | sort -u | grep -c '^[A-Z]' > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf ${OUT} + +#!/bin/bash +# Parallelized script for processing input files + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_1_2/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + sort -u | + grep -c '^[A-Z]' > "${out_dir}/${input}.out" +} +export -f process_file + +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/verses_2om_3om_2instances.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/verses_2om_3om_2instances.sh new file mode 100755 index 00000000..f0c825a4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/verses_2om_3om_2instances.sh @@ -0,0 +1,45 @@ +# !/bin/bash +# tag: verse_2om_3om_2instances +# set -e +# verses with 2 or more, 3 or more, exactly 2 instances of light. + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_7/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | grep -c 'light.\*light' > ${OUT}/${input}.out0 +# cat $IN/$input | grep -c 'light.\*light.\*light' > ${OUT}/${input}.out1 +# cat $IN/$input | grep 'light.\*light' | grep -vc 'light.\*light.\*light' > ${OUT}/${input}.out2 +# done + +# echo 'done'; +# rm -rf ${OUT} + +#!/bin/bash +# Parallelized script for processing light patterns in input files + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_7/} +ENTRIES=${ENTRIES:-1000} + +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | grep -c 'light.\*light' > "${out_dir}/${input}.out0" + cat "$in_dir/$input" | grep -c 'light.\*light.\*light' > "${out_dir}/${input}.out1" + cat "$in_dir/$input" | grep 'light.\*light' | grep -vc 'light.\*light.\*light' > "${out_dir}/${input}.out2" +} + +export -f process_file + +# Use GNU Parallel to process files concurrently +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +echo 'done' diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/vowel_sequencies_gr_1K.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/vowel_sequencies_gr_1K.sh new file mode 100755 index 00000000..bdc3a797 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/vowel_sequencies_gr_1K.sh @@ -0,0 +1,43 @@ +#!/bin/bash +# tag: vowel_sequences_gr_1K.sh +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/8.2_1/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | tr -sc 'AEIOUaeiou' '[\012*]' | sort | uniq -c | awk "\$1 >= 1000" > ${OUT}/${input}.out +# done + +# echo 'done'; +# rm -rf "$OUT" +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/8.2_1/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + tr -sc 'AEIOUaeiou' '[\012*]' | + sort | + uniq -c | + awk '$1 >= 1000' > "${out_dir}/${input}.out" +} +export -f process_file + +# Use GNU Parallel to process files concurrently +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/nlp/scripts/words_no_vowels.sh b/infrastructure/systems/GNU-Parallel/nlp/scripts/words_no_vowels.sh new file mode 100755 index 00000000..48814d85 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/scripts/words_no_vowels.sh @@ -0,0 +1,42 @@ +#!/bin/bash +# tag: words_no_vowels +# set -e + +# IN=${IN:-$SUITE_DIR/inputs/pg} +# OUT=${1:-$SUITE_DIR/outputs/6_3/} +# ENTRIES=${ENTRIES:-1000} +# mkdir -p "$OUT" + +# for input in $(ls ${IN} | head -n ${ENTRIES} | xargs -I arg1 basename arg1) +# do +# cat $IN/$input | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | grep -vi '[aeiou]' | sort | uniq -c > ${OUT}/${input}.out +# done + +# echo 'done'; + +IN=${IN:-$SUITE_DIR/inputs/pg} +OUT=${1:-$SUITE_DIR/outputs/6_3/} +ENTRIES=${ENTRIES:-1000} +mkdir -p "$OUT" + +process_file() { + input=$1 + in_dir=$2 + out_dir=$3 + + cat "$in_dir/$input" | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + grep -vi '[aeiou]' | + sort | + uniq -c > "${out_dir}/${input}.out" +} +export -f process_file + +# Use GNU Parallel to process files concurrently +ls "${IN}" | head -n "${ENTRIES}" | parallel -j "$(nproc)" process_file {} "${IN}" "${OUT}" + +# Cleanup +rm -f file_list.txt + +echo "done" diff --git a/infrastructure/systems/GNU-Parallel/nlp/verify.sh b/infrastructure/systems/GNU-Parallel/nlp/verify.sh new file mode 100755 index 00000000..f4f45d73 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/nlp/verify.sh @@ -0,0 +1,63 @@ +#!/bin/bash + +# Exit immediately if a command exits with a non-zero status +# set -e + +cd "$(realpath $(dirname "$0"))" + +mkdir -p hashes/small + +if [[ "$@" == *"--small"* ]]; then + hash_folder="hashes/small" +else + hash_folder="hashes" +fi + +if [[ "$@" == *"--generate"* ]]; then + # Directory to iterate over + directory="outputs" + + # Loop through all .out files in the directory + find "$directory" -type f -name '*.out' | while read -r file; + do + # Extract the filename and dirname + filename=$(basename "$file" .out) + dirname=$(dirname "${file#$directory/}") + + # Generate SHA-256 hash + hash=$(shasum -a 256 "$file" | awk '{ print $1 }') + + # Create subdirectory if not already + mkdir -p $hash_folder/$dirname + + # Save the hash to a file + echo "$hash" > "$hash_folder/$dirname/$filename.hash" + + # Print the filename and hash + echo "$hash_folder/$dirname/$filename.hash" "$hash" + done + + exit 0 +fi + +# Loop through all directories in the parent directory +for folder in "outputs"/* +do + # Loop through all .out files in the current directory + find "$folder" -type f -name '*.out' | while read -r file; + do + # Extract the filename and dirname + filename=$(basename "$file" .out) + dirname=$(basename "$(dirname "$file")") # is the script_name + + # Generate SHA-256 hash + shasum -a 256 "$file" | awk '{ print $1 }' > "$file.hash" + + # Compare the hash with the hash in the hashes directory + diff "$hash_folder/$dirname/$filename.hash" "$file.hash" > /dev/null + match="$?" + + # Print the filename and match + echo "$dirname/$filename $match" + done +done diff --git a/infrastructure/systems/GNU-Parallel/oneliners/.gitignore b/infrastructure/systems/GNU-Parallel/oneliners/.gitignore new file mode 100644 index 00000000..f72f5fdc --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/.gitignore @@ -0,0 +1,2 @@ +inputs/ +outputs/ diff --git a/infrastructure/systems/GNU-Parallel/oneliners/all_cmds.txt b/infrastructure/systems/GNU-Parallel/oneliners/all_cmds.txt new file mode 100644 index 00000000..6332d820 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/all_cmds.txt @@ -0,0 +1,3797 @@ +/usr/bin/2to3 +/usr/bin/411toppm +/usr/bin/GET +/usr/bin/HEAD +/usr/bin/JxrDecApp +/usr/bin/JxrEncApp +/usr/bin/NF +/usr/bin/POST +/usr/bin/[ +/usr/bin/a2ping +/usr/bin/a5booklet +/usr/bin/a5toa4 +/usr/bin/aa-enabled +/usr/bin/aa-exec +/usr/bin/aa-features-abi +/usr/bin/aclocal +/usr/bin/aclocal-1.16 +/usr/bin/acyclic +/usr/bin/add-apt-repository +/usr/bin/addpart +/usr/bin/addr2line +/usr/bin/adhocfilelist +/usr/bin/afm2afm +/usr/bin/afm2pl +/usr/bin/afm2tfm +/usr/bin/aleph +/usr/bin/allcm +/usr/bin/allec +/usr/bin/allneeded +/usr/bin/amstex +/usr/bin/animate +/usr/bin/animate-im6 +/usr/bin/animate-im6.q16 +/usr/bin/anytopnm +/usr/bin/apport-bug +/usr/bin/apport-cli +/usr/bin/apport-collect +/usr/bin/apport-unpack +/usr/bin/appres +/usr/bin/apropos +/usr/bin/apt +/usr/bin/apt-add-repository +/usr/bin/apt-cache +/usr/bin/apt-cdrom +/usr/bin/apt-config +/usr/bin/apt-extracttemplates +/usr/bin/apt-ftparchive +/usr/bin/apt-get +/usr/bin/apt-key +/usr/bin/apt-mark +/usr/bin/apt-sortpkgs +/usr/bin/ar +/usr/bin/arara +/usr/bin/arch +/usr/bin/arlatex +/usr/bin/as +/usr/bin/asciitopgm +/usr/bin/asy +/usr/bin/atktopbm +/usr/bin/authorindex +/usr/bin/autoconf +/usr/bin/autoheader +/usr/bin/autoinst +/usr/bin/autom4te +/usr/bin/automake +/usr/bin/automake-1.16 +/usr/bin/autoreconf +/usr/bin/autoscan +/usr/bin/autosp +/usr/bin/autoupdate +/usr/bin/awk +/usr/bin/axohelp +/usr/bin/b2sum +/usr/bin/base32 +/usr/bin/base64 +/usr/bin/basename +/usr/bin/basenc +/usr/bin/bash +/usr/bin/bashbug +/usr/bin/bbl2bib +/usr/bin/bbox +/usr/bin/bc +/usr/bin/bcomps +/usr/bin/bdftopcf +/usr/bin/bdftruncate +/usr/bin/bg5+latex +/usr/bin/bg5+pdflatex +/usr/bin/bg5conv +/usr/bin/bg5latex +/usr/bin/bg5pdflatex +/usr/bin/bib2gls +/usr/bin/bibdoiadd +/usr/bin/biber +/usr/bin/bibexport +/usr/bin/bibmradd +/usr/bin/bibtex +/usr/bin/bibtex.original +/usr/bin/bibtex8 +/usr/bin/bibtexu +/usr/bin/biburl2doi +/usr/bin/bibzbladd +/usr/bin/bioradtopgm +/usr/bin/bmptopnm +/usr/bin/bmptoppm +/usr/bin/bootctl +/usr/bin/broadwayd +/usr/bin/browse +/usr/bin/brushtopbm +/usr/bin/bundle3.0 +/usr/bin/bundledoc +/usr/bin/bundler3.0 +/usr/bin/bunzip2 +/usr/bin/busctl +/usr/bin/busybox +/usr/bin/byobu +/usr/bin/byobu-config +/usr/bin/byobu-ctrl-a +/usr/bin/byobu-disable +/usr/bin/byobu-disable-prompt +/usr/bin/byobu-enable +/usr/bin/byobu-enable-prompt +/usr/bin/byobu-export +/usr/bin/byobu-janitor +/usr/bin/byobu-keybindings +/usr/bin/byobu-launch +/usr/bin/byobu-launcher +/usr/bin/byobu-launcher-install +/usr/bin/byobu-launcher-uninstall +/usr/bin/byobu-layout +/usr/bin/byobu-prompt +/usr/bin/byobu-quiet +/usr/bin/byobu-reconnect-sockets +/usr/bin/byobu-screen +/usr/bin/byobu-select-backend +/usr/bin/byobu-select-profile +/usr/bin/byobu-select-session +/usr/bin/byobu-shell +/usr/bin/byobu-silent +/usr/bin/byobu-status +/usr/bin/byobu-status-detail +/usr/bin/byobu-tmux +/usr/bin/byobu-ugraph +/usr/bin/byobu-ulevel +/usr/bin/bzcat +/usr/bin/bzcmp +/usr/bin/bzdiff +/usr/bin/bzegrep +/usr/bin/bzexe +/usr/bin/bzfgrep +/usr/bin/bzgrep +/usr/bin/bzip2 +/usr/bin/bzip2recover +/usr/bin/bzless +/usr/bin/bzmore +/usr/bin/c++ +/usr/bin/c++filt +/usr/bin/c89 +/usr/bin/c89-gcc +/usr/bin/c99 +/usr/bin/c99-gcc +/usr/bin/c_rehash +/usr/bin/cachepic +/usr/bin/cal +/usr/bin/cancel +/usr/bin/captoinfo +/usr/bin/cat +/usr/bin/catman +/usr/bin/cc +/usr/bin/ccomps +/usr/bin/cef5conv +/usr/bin/cef5latex +/usr/bin/cef5pdflatex +/usr/bin/cefconv +/usr/bin/ceflatex +/usr/bin/cefpdflatex +/usr/bin/cefsconv +/usr/bin/cefslatex +/usr/bin/cefspdflatex +/usr/bin/cfftot1 +/usr/bin/chage +/usr/bin/chattr +/usr/bin/chcon +/usr/bin/checkcites +/usr/bin/checklistings +/usr/bin/chfn +/usr/bin/chgrp +/usr/bin/chkdvifont +/usr/bin/chklref +/usr/bin/chktex +/usr/bin/chkweb +/usr/bin/chmod +/usr/bin/choom +/usr/bin/chown +/usr/bin/chromedriver +/usr/bin/chromium-browser +/usr/bin/chrt +/usr/bin/chsh +/usr/bin/chvt +/usr/bin/circo +/usr/bin/cjk-gs-integrate +/usr/bin/ckbcomp +/usr/bin/cksum +/usr/bin/clear +/usr/bin/clear_console +/usr/bin/cluster +/usr/bin/cluttex +/usr/bin/cmp +/usr/bin/cmuwmtopbm +/usr/bin/codepage +/usr/bin/col +/usr/bin/col1 +/usr/bin/col2 +/usr/bin/col3 +/usr/bin/col4 +/usr/bin/col5 +/usr/bin/col6 +/usr/bin/col7 +/usr/bin/col8 +/usr/bin/col9 +/usr/bin/colcrt +/usr/bin/colrm +/usr/bin/column +/usr/bin/comm +/usr/bin/compare +/usr/bin/compare-im6 +/usr/bin/compare-im6.q16 +/usr/bin/composite +/usr/bin/composite-im6 +/usr/bin/composite-im6.q16 +/usr/bin/conjure +/usr/bin/conjure-im6 +/usr/bin/conjure-im6.q16 +/usr/bin/context +/usr/bin/contextjit +/usr/bin/convbkmk +/usr/bin/convert +/usr/bin/convert-im6 +/usr/bin/convert-im6.q16 +/usr/bin/convertgls2bib +/usr/bin/corelist +/usr/bin/cp +/usr/bin/cpan +/usr/bin/cpan5.34-x86_64-linux-gnu +/usr/bin/cpio +/usr/bin/cpp +/usr/bin/cpp-11 +/usr/bin/crontab +/usr/bin/cslatex +/usr/bin/csplain +/usr/bin/csplit +/usr/bin/ctail +/usr/bin/ctan-o-mat +/usr/bin/ctanbib +/usr/bin/ctangle +/usr/bin/ctanify +/usr/bin/ctanupload +/usr/bin/ctie +/usr/bin/ctstat +/usr/bin/ctwill +/usr/bin/ctwill-refsort +/usr/bin/ctwill-twinx +/usr/bin/cupstestppd +/usr/bin/curl +/usr/bin/cut +/usr/bin/cvtsudoers +/usr/bin/cweave +/usr/bin/dash +/usr/bin/date +/usr/bin/dbus-cleanup-sockets +/usr/bin/dbus-daemon +/usr/bin/dbus-launch +/usr/bin/dbus-monitor +/usr/bin/dbus-run-session +/usr/bin/dbus-send +/usr/bin/dbus-update-activation-environment +/usr/bin/dbus-uuidgen +/usr/bin/dd +/usr/bin/deallocvt +/usr/bin/deb-systemd-helper +/usr/bin/deb-systemd-invoke +/usr/bin/debconf +/usr/bin/debconf-apt-progress +/usr/bin/debconf-communicate +/usr/bin/debconf-copydb +/usr/bin/debconf-escape +/usr/bin/debconf-set-selections +/usr/bin/debconf-show +/usr/bin/debian-distro-info +/usr/bin/delaunay +/usr/bin/delpart +/usr/bin/delv +/usr/bin/depythontex +/usr/bin/detex +/usr/bin/devnag +/usr/bin/deweb +/usr/bin/df +/usr/bin/dh_autotools-dev_restoreconfig +/usr/bin/dh_autotools-dev_updateconfig +/usr/bin/dh_bash-completion +/usr/bin/dh_installtex +/usr/bin/dh_perl_openssl +/usr/bin/diadia +/usr/bin/diff +/usr/bin/diff3 +/usr/bin/diffimg +/usr/bin/dig +/usr/bin/dijkstra +/usr/bin/dir +/usr/bin/dircolors +/usr/bin/dirmngr +/usr/bin/dirmngr-client +/usr/bin/dirname +/usr/bin/disdvi +/usr/bin/display +/usr/bin/display-im6 +/usr/bin/display-im6.q16 +/usr/bin/distro-info +/usr/bin/dmesg +/usr/bin/dnsdomainname +/usr/bin/do-release-upgrade +/usr/bin/domainname +/usr/bin/dosepsbin +/usr/bin/dot +/usr/bin/dot2gxl +/usr/bin/dot_builtins +/usr/bin/dotty +/usr/bin/dpkg +/usr/bin/dpkg-architecture +/usr/bin/dpkg-buildflags +/usr/bin/dpkg-buildpackage +/usr/bin/dpkg-checkbuilddeps +/usr/bin/dpkg-deb +/usr/bin/dpkg-distaddfile +/usr/bin/dpkg-divert +/usr/bin/dpkg-genbuildinfo +/usr/bin/dpkg-genchanges +/usr/bin/dpkg-gencontrol +/usr/bin/dpkg-gensymbols +/usr/bin/dpkg-maintscript-helper +/usr/bin/dpkg-mergechangelogs +/usr/bin/dpkg-name +/usr/bin/dpkg-parsechangelog +/usr/bin/dpkg-query +/usr/bin/dpkg-realpath +/usr/bin/dpkg-scanpackages +/usr/bin/dpkg-scansources +/usr/bin/dpkg-shlibdeps +/usr/bin/dpkg-source +/usr/bin/dpkg-split +/usr/bin/dpkg-statoverride +/usr/bin/dpkg-trigger +/usr/bin/dpkg-vendor +/usr/bin/dt2dv +/usr/bin/dtxgen +/usr/bin/du +/usr/bin/dumpkeys +/usr/bin/dv2dt +/usr/bin/dvi2fax +/usr/bin/dvi2tty +/usr/bin/dviasm +/usr/bin/dvibook +/usr/bin/dviconcat +/usr/bin/dvicopy +/usr/bin/dvidvi +/usr/bin/dvigif +/usr/bin/dvihp +/usr/bin/dviinfox 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+x86_64-linux-gnu-addr2line +x86_64-linux-gnu-ar +x86_64-linux-gnu-as +x86_64-linux-gnu-c++filt +x86_64-linux-gnu-cpp +x86_64-linux-gnu-cpp-11 +x86_64-linux-gnu-dwp +x86_64-linux-gnu-elfedit +x86_64-linux-gnu-g++ +x86_64-linux-gnu-g++-11 +x86_64-linux-gnu-gcc +x86_64-linux-gnu-gcc-11 +x86_64-linux-gnu-gcc-ar +x86_64-linux-gnu-gcc-ar-11 +x86_64-linux-gnu-gcc-nm +x86_64-linux-gnu-gcc-nm-11 +x86_64-linux-gnu-gcc-ranlib +x86_64-linux-gnu-gcc-ranlib-11 +x86_64-linux-gnu-gcov +x86_64-linux-gnu-gcov-11 +x86_64-linux-gnu-gcov-dump +x86_64-linux-gnu-gcov-dump-11 +x86_64-linux-gnu-gcov-tool +x86_64-linux-gnu-gcov-tool-11 +x86_64-linux-gnu-gold +x86_64-linux-gnu-gprof +x86_64-linux-gnu-ld +x86_64-linux-gnu-ld.bfd +x86_64-linux-gnu-ld.gold +x86_64-linux-gnu-lto-dump-11 +x86_64-linux-gnu-nm +x86_64-linux-gnu-objcopy +x86_64-linux-gnu-objdump +x86_64-linux-gnu-pkg-config +x86_64-linux-gnu-python3-config +x86_64-linux-gnu-python3.10-config +x86_64-linux-gnu-ranlib +x86_64-linux-gnu-readelf +x86_64-linux-gnu-size +x86_64-linux-gnu-strings +x86_64-linux-gnu-strip +x86_64-pc-linux-gnu-pkg-config +xargs +xauth +xbmtopbm +xcmsdb +xdg-desktop-icon +xdg-desktop-menu +xdg-email +xdg-icon-resource +xdg-mime +xdg-open +xdg-screensaver +xdg-settings +xdg-user-dir +xdg-user-dirs-update +xdpyinfo +xdriinfo +xdvi +xdvi-xaw +xdvi.bin +xdvipdfmx +xelatex +xelatex-dev +xetex +xev +xfd +xfontsel +xgamma +xhlatex +xhost +ximtoppm +xindex +xkeystone +xkill +xlsatoms +xlsclients +xlsfonts +xmessage +xml2pmx +xmltex +xmodmap +xpdf +xpdf.real +xpmtoppm +xprop +xrandr +xrdb +xrefresh +xset +xsetmode +xsetpointer +xsetroot +xstdcmap +xsubpp +xterm +xvidtune +xvinfo +xvminitoppm +xwdtopnm +xwininfo +xxd +xz +xzcat +xzcmp +xzdiff +xzegrep +xzfgrep +xzgrep +xzless +xzmore +ybmtopbm +yes +ypdomainname +yplan +yuvsplittoppm +yuvtoppm +zcat +zcmp +zdiff +zdump +zegrep +zeisstopnm +zfgrep +zforce +zgrep +zip +zipcloak +zipdetails +zipgrep +zipinfo +zipnote +zipsplit +zless +zmore +znew diff --git a/infrastructure/systems/GNU-Parallel/oneliners/cleanup.sh b/infrastructure/systems/GNU-Parallel/oneliners/cleanup.sh new file mode 100755 index 00000000..2e2e12f3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/cleanup.sh @@ -0,0 +1,5 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +rm -rf ./inputs +rm -rf ./outputs diff --git a/infrastructure/systems/GNU-Parallel/oneliners/deps.sh b/infrastructure/systems/GNU-Parallel/oneliners/deps.sh new file mode 100755 index 00000000..6f57aa32 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/deps.sh @@ -0,0 +1,8 @@ +#!/bin/bash + +sudo apt update +sudo apt install -y \ + wget \ + bsdmainutils \ + file \ + dos2unix diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/bi-grams.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/bi-grams.hash new file mode 100644 index 00000000..dee8173b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/bi-grams.hash @@ -0,0 +1 @@ +7bcbd9fa9dc8608b74c7b9c4f97691aab888799a656674d64e888caec471ed7b diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/diff.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/diff.hash new file mode 100644 index 00000000..9e8abb10 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/diff.hash @@ -0,0 +1 @@ +e0f3f7916effc9373fa39b3a8c211671305b5771d4a8bb10b37c3b9a5cf1f2b7 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/nfa-regex.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/nfa-regex.hash new file mode 100644 index 00000000..29cb9987 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/nfa-regex.hash @@ -0,0 +1 @@ +589f64d6c9a5c9501b0a2b92ee35a880fcdf2b89075628b18d3472661d00fcb6 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/set-diff.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/set-diff.hash new file mode 100644 index 00000000..dd908f0f --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/set-diff.hash @@ -0,0 +1 @@ +e737aa088e2771e162fb60ce42d9374c8a8768b9bba9f3d6aaba6c7b47bbd862 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/sort-sort.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/sort-sort.hash new file mode 100644 index 00000000..62c3b233 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/sort-sort.hash @@ -0,0 +1 @@ +b10dd497b66955e63cf32eb3a4796d7edd0ae4876a450cca6970a9d261968780 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/sort.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/sort.hash new file mode 100644 index 00000000..c18d9436 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/sort.hash @@ -0,0 +1 @@ +965dfcdb1fa45be5cb5b125683e01a1882d2693384cd76782beacadfda5f2872 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/spell.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/spell.hash new file mode 100644 index 00000000..bce731e7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/spell.hash @@ -0,0 +1 @@ +83a9657314b52598447ebc4a4a6717fdd23d3d81b27e4821d434054a989a97b9 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/top-n.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/top-n.hash new file mode 100644 index 00000000..4ea1096c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/top-n.hash @@ -0,0 +1 @@ +0dc989a25adf29a6648b3b4fcefc425770ef022b34699e08601aecdb95aeedc7 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/uniq-ips.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/uniq-ips.hash new file mode 100644 index 00000000..1be81fcd --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/uniq-ips.hash @@ -0,0 +1 @@ +524f9f2fd84218f581ffe16d175acab35a679f8fdac099083a20a39b13d51e0c diff --git a/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/wf.hash b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/wf.hash new file mode 100644 index 00000000..eb2ae41e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/hashes/small/wf.hash @@ -0,0 +1 @@ +1eb612a3c85b375fc89ec8044278bad13c7e4df7a01f0c70b81643dc09d081a9 diff --git a/infrastructure/systems/GNU-Parallel/oneliners/input.sh b/infrastructure/systems/GNU-Parallel/oneliners/input.sh new file mode 100755 index 00000000..2db674d0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/input.sh @@ -0,0 +1,53 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +mkdir -p inputs +cd inputs + +input_files=("1M.txt" "1G.txt" "3G.txt" "all_cmds.txt" "all_cmdsx100.txt" "dict.txt") + +if [ ! -f ./1M.txt ]; then + wget --no-check-certificate https://atlas-group.cs.brown.edu/data/dummy/1M.txt + # TODO: Add newline to the original file + echo >> 1M.txt + dos2unix 1M.txt +fi + +if [ ! -f ./1G.txt ]; then + touch 1G.txt + for (( i = 0; i < 1000; i++ )); do + cat 1M.txt >> 1G.txt + done +fi + +if [ ! -f ./3G.txt ]; then + touch 3G.txt + for (( i = 0; i < 3; i++ )); do + cat 1G.txt >> 3G.txt + done +fi + +if [ ! -f ./dict.txt ]; then + wget -O - https://atlas-group.cs.brown.edu/data/dummy/dict.txt --no-check-certificate | sort > dict.txt +fi + +if [ ! -f ./all_cmds.txt ]; then + # TODO: Upload this file to the server + cp ../all_cmds.txt all_cmds.txt +fi + +if [ ! -f ./all_cmdsx100.txt ]; then + touch all_cmdsx100.txt + for (( i = 0; i < 100; i++ )); do + cat all_cmds.txt >> all_cmdsx100.txt + done +fi + +# For uniq-ips +if [ "$1" = "--small" ]; then + N=4000 # 4K +else + N=40000000 # 40M +fi + +../scripts/gen_ips.py "$N" > logs-popcount-org.txt diff --git a/infrastructure/systems/GNU-Parallel/oneliners/run.sh b/infrastructure/systems/GNU-Parallel/oneliners/run.sh new file mode 100755 index 00000000..a81f01b7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/run.sh @@ -0,0 +1,51 @@ +#!/bin/bash + +export SUITE_DIR=$(realpath $(dirname "$0")) +export TIMEFORMAT=%R +cd $SUITE_DIR + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} + +if [[ "$@" == *"--small"* ]]; then + scripts_inputs=( + "nfa-regex;1M" + "sort;1M" + "top-n;1M" + "wf;1M" + "spell;1M" + "diff;1M" + "bi-grams;1M" + "set-diff;1M" + "sort-sort;1M" + "uniq-ips;logs-popcount-org" + ) +else + scripts_inputs=( + "nfa-regex;1G" + "sort;3G" + "top-n;3G" + "wf;3G" + "spell;3G" + "diff;3G" + "bi-grams;3G" + "set-diff;3G" + "sort-sort;3G" + "uniq-ips;logs-popcount-org" + ) +fi + +mkdir -p "outputs" + +echo executing oneliners $(date) + +for script_input in ${scripts_inputs[@]} +do + IFS=";" read -r -a parsed <<< "${script_input}" + script_file="./scripts/${parsed[0]}.sh" + input_file="./inputs/${parsed[1]}.txt" + output_file="./outputs/${parsed[0]}.out" + + echo "$script_file" + $BENCHMARK_SHELL "$script_file" "$input_file" > "$output_file" + echo "$?" +done diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/bi-gram.aux.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/bi-gram.aux.sh new file mode 100755 index 00000000..5f66058b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/bi-gram.aux.sh @@ -0,0 +1,96 @@ +#!/bin/bash +# Auxiliary functions for bi-grams + +bigrams_aux() +{ + s2=$(mktemp -u) + mkfifo $s2 + tee $s2 | + tail -n +2 | + paste $s2 - | + sed '$d' + rm $s2 +} + +bigram_aux_map() +{ + IN=$1 + OUT=$2 + AUX_HEAD=$3 + AUX_TAIL=$4 + + s2=$(mktemp -u) + aux1=$(mktemp -u) + aux2=$(mktemp -u) + aux3=$(mktemp -u) + temp=$(mktemp -u) + + mkfifo $s2 + mkfifo $aux1 + mkfifo $aux2 + mkfifo $aux3 + + ## New way of doing it using an intermediate file. This is slow + ## but doesn't deadlock + cat $IN > $temp + + sed '$d' $temp > $aux3 & + cat $temp | head -n 1 > $AUX_HEAD & + cat $temp | tail -n 1 > $AUX_TAIL & + cat $temp | tail -n +2 | paste $aux3 - > $OUT & + + # ## Old way of doing it + # cat $IN | + # tee $s2 $aux1 $aux2 | + # tail -n +2 | + # paste $s2 - > $OUT & + + # ## The goal of this is to write the first line of $IN in the $AUX_HEAD + # ## stream and the last line of $IN in $AUX_TAIL + + # cat $aux1 | ( head -n 1 > $AUX_HEAD; $PASH_TOP/evaluation/tools/drain_stream.sh ) & + # # while IFS= read -r line + # # do + # # old_line=$line + # # done < $aux2 + # # echo "$old_line" > $AUX_TAIL + # ( tail -n 1 $aux2 > $AUX_TAIL; $PASH_TOP/evaluation/tools/drain_stream.sh ) & + + wait + + rm $temp + rm $s2 + rm $aux1 + rm $aux2 + rm $aux3 +} + +bigram_aux_reduce() +{ + IN1=$1 + AUX_HEAD1=$2 + AUX_TAIL1=$3 + IN2=$4 + AUX_HEAD2=$5 + AUX_TAIL2=$6 + OUT=$7 + AUX_HEAD_OUT=$8 + AUX_TAIL_OUT=$9 + + temp=$(mktemp -u) + + mkfifo $temp + + cat $AUX_HEAD1 > $AUX_HEAD_OUT & + cat $AUX_TAIL2 > $AUX_TAIL_OUT & + paste $AUX_TAIL1 $AUX_HEAD2 > $temp & + cat $IN1 $temp $IN2 > $OUT & + + wait + + rm $temp +} + +export -f bigrams_aux +export -f bigram_aux_map +export -f bigram_aux_reduce diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/bi-grams.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/bi-grams.sh new file mode 100755 index 00000000..912ff61c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/bi-grams.sh @@ -0,0 +1,13 @@ +#!/bin/bash +# Find all 2-grams in a piece of text + +. ./scripts/bi-gram.aux.sh +cat $1 | + tr -c 'A-Za-z' '[\n*]' | + grep -v "^\s*$" | + tr A-Z a-z | + bigrams_aux | + sort | + uniq + +# No opportunity for GNU parallel \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/diff.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/diff.sh new file mode 100755 index 00000000..eeed85b8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/diff.sh @@ -0,0 +1,21 @@ +#!/bin/bash +# Compares two streams element by element +# Taken from https://crashingdaily.wordpress.com/2008/03/06/diff-two-stdout-streams/ +# shuf() { awk 'BEGIN {srand(); OFMT="%.17f"} {print rand(), $0}' "$@" | sort -k1,1n | cut -d ' ' -f2-; } + +mkfifo s1 s2 + +cat $1 | + # shuf | + tr "[:lower:]" "[:upper:]" | + sort > s1 & + +cat $1 | + # shuf | + tr "[:upper:]" "[:lower:]" | + sort > s2 & + +diff -B s1 s2 +rm s1 s2 + +# No opportunity for GNU parallel \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/gen_ips.py b/infrastructure/systems/GNU-Parallel/oneliners/scripts/gen_ips.py new file mode 100755 index 00000000..d4ac0c0b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/gen_ips.py @@ -0,0 +1,28 @@ +#!/usr/bin/env python3 +import sys +import random + +# Function to generate a random IP address +def generate_ip(): + return ".".join(str(random.randint(0, 255)) for _ in range(4)) + +# Function to generate random data with IP addresses and datacenter numbers +def generate_data(): + ip = generate_ip() + num = random.randint(1, 200) + line = f"{ip} {num}" + return line + +def main(): + if len(sys.argv) != 2: + print(f"Usage: {sys.argv[0]} ", file=sys.stderr) + sys.exit(1) + + random.seed(42) + n = sys.argv[1] + n = int(n) + for _ in range(n): + print(generate_data()) + +if __name__ == "__main__": + main() diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/nfa-regex.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/nfa-regex.sh new file mode 100755 index 00000000..1ef1c88b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/nfa-regex.sh @@ -0,0 +1,8 @@ +#!/bin/bash +# Match complex regular-expression over input + +# cat $1 | tr A-Z a-z | grep '\(.\).*\1\(.\).*\2\(.\).*\3\(.\).*\4' + +# using GNU parallel + +cat "$1" | parallel --pipe -k --block 100K "tr A-Z a-z | grep '\(.\).*\1\(.\).*\2\(.\).*\3\(.\).*\4'" diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/set-diff.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/set-diff.sh new file mode 100755 index 00000000..ab6f34c4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/set-diff.sh @@ -0,0 +1,20 @@ +#!/bin/bash +# Show the set-difference between two streams (i.e., elements in the first that are not in the second). +# https://stackoverflow.com/questions/2509533/bash-linux-set-difference-between-two-text-files + +mkfifo s1 s2 + +cat $1 | + cut -d ' ' -f 1 | + tr "[:lower:]" "[:upper:]" | + sort > s1 & + +cat $1 | + cut -d ' ' -f 1 | + sort > s2 & + +comm -23 s1 s2 + +rm s1 s2 + +# No opportunity for GNU parallel \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/sort-sort.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/sort-sort.sh new file mode 100755 index 00000000..2516be47 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/sort-sort.sh @@ -0,0 +1,6 @@ +#!/bin/bash +# Calculate sort twice + +# cat $1 | tr A-Z a-z | sort | sort -r + +cat "$1" | parallel -k --pipe --block 100K "tr A-Z a-z" | sort | sort -r diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/sort.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/sort.sh new file mode 100755 index 00000000..bed588c8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/sort.sh @@ -0,0 +1,5 @@ +#!/bin/bash + +cat $1 | sort + +# No opportunity for GNU parallel \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/spell.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/spell.sh new file mode 100755 index 00000000..3e432b46 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/spell.sh @@ -0,0 +1,15 @@ +#!/bin/bash +# Calculate mispelled words in an input +# https://dl.acm.org/doi/10.1145/3532.315102 + +dict=$SUITE_DIR/inputs/dict.txt + +cat $1 | + sed 's/[^[:print:]]//g' | # remove non-printing characters + col -bx | # remove backspaces / linefeeds + tr -cs A-Za-z '\n' | + tr A-Z a-z | # map upper to lower case + tr -d '[:punct:]' | # remove punctuation + sort | # put words in alphabetical order + uniq | # remove duplicate words + comm -23 - $dict # report words not in dictionary diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/top-n.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/top-n.sh new file mode 100755 index 00000000..6d3e92f0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/top-n.sh @@ -0,0 +1,7 @@ +#!/bin/bash +# Top-N (1000) terms +# from https://dl.acm.org/doi/10.1145/5948.315654 + +# cat $1 | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | tr A-Z a-z | sort | uniq -c | sort -rn | sed 100q + +cat "$1" | parallel --pipe --block 100K "tr -c 'A-Za-z' '[\n*]' | grep -v '^\s*$' | tr A-Z a-z" | sort | uniq -c | sort -rn | sed 100q diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/uniq-ips.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/uniq-ips.sh new file mode 100755 index 00000000..f37585e1 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/uniq-ips.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# Finding unique ips +# from: https://blog.cloudflare.com/when-bloom-filters-dont-bloom/ +cat "$1" | sort | uniq + +# No opportunity for GNU parallel \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/oneliners/scripts/wf.sh b/infrastructure/systems/GNU-Parallel/oneliners/scripts/wf.sh new file mode 100755 index 00000000..7cb7438b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/scripts/wf.sh @@ -0,0 +1,10 @@ +#!/bin/bash +# Calculate the frequency of each word in the document, and sort by frequency + +# cat $1 | tr -c 'A-Za-z' '[\n*]' | grep -v "^\s*$" | tr A-Z a-z | sort | uniq -c | sort -rn + +cat "$1" | parallel --pipe --block 100K \ + "tr -c 'A-Za-z' '[\\n*]' | grep -v '^\\s*$' | tr A-Z a-z" | + sort | + uniq -c | + sort -rn diff --git a/infrastructure/systems/GNU-Parallel/oneliners/verify.sh b/infrastructure/systems/GNU-Parallel/oneliners/verify.sh new file mode 100755 index 00000000..c5cda397 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/oneliners/verify.sh @@ -0,0 +1,63 @@ +#!/bin/bash + +# Exit immediately if a command exits with a non-zero status +# set -e + +cd "$(realpath $(dirname "$0"))" +mkdir -p hashes/small + +[ ! -d "outputs" ] && echo "Directory 'outputs' does not exist" && exit 1 + +if [[ "$@" == *"--small"* ]]; then + hash_folder="hashes/small" +else + hash_folder="hashes" +fi + +if [[ "$@" == *"--generate"* ]]; then + # Directory to iterate over + directory="outputs" + + # Loop through all .out files in the directory + for file in "$directory"/*.out + do + # Extract the filename without the directory path and extension + filename=$(basename "$file" .out) + + # Generate SHA-256 hash + hash=$(shasum -a 256 "$file" | awk '{ print $1 }') + + # Save the hash to a file + echo "$hash" > "$hash_folder/$filename.hash" + + # Print the filename and hash + echo "$hash_folder/$filename.hash $hash" + done + + exit 0 +fi + +# Loop through all directories in the parent directory +for folder in "outputs"/ +do + # Remove trailing slash + folder=${folder%/} + + # Loop through all .out files in the current directory + for file in "$folder"/*.out + do + # Extract the filename without the directory path and extension + filename=$(basename "$file" .out) + + # Generate SHA-256 hash + hash=$(shasum -a 256 "$file" | awk '{ print $1 }') + + # Save the hash to a file + echo "$hash" > "$folder/$filename.hash" + + diff "$hash_folder/$filename.hash" "$folder/$filename.hash" > /dev/null + match="$?" + # Print the filename and hash + echo "$folder/$filename $match" + done +done diff --git a/infrastructure/systems/GNU-Parallel/riker/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/cleanup.sh new file mode 100755 index 00000000..cb0025ee --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/cleanup.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" + +for bench in "$scripts_dir"/*; do + "$bench/cleanup.sh" $@ +done + diff --git a/infrastructure/systems/GNU-Parallel/riker/deps.sh b/infrastructure/systems/GNU-Parallel/riker/deps.sh new file mode 100755 index 00000000..464c73eb --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/deps.sh @@ -0,0 +1,19 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" + +tz="America/New_York" +sudo echo "$tz" > /etc/timezone +sudo rm -f /etc/localtime +sudo ln -s "/usr/share/zoneinfo/$tz" /etc/localtime + +sudo apt update + +sudo apt install -y build-essential + +for bench in "$scripts_dir"/*; do + "$bench/deps.sh" $@ +done + diff --git a/infrastructure/systems/GNU-Parallel/riker/input.sh b/infrastructure/systems/GNU-Parallel/riker/input.sh new file mode 100755 index 00000000..6e77fb3a --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/input.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" + +for bench in "$scripts_dir"/*; do + "$bench/input.sh" $@ +done + diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/Dockerfile b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/Dockerfile new file mode 100644 index 00000000..8681fcd4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/Dockerfile @@ -0,0 +1,19 @@ +FROM hs-riker + +RUN apt-get update && apt-get install -y wget \ + make \ + m4 \ + perl + +WORKDIR /root + +RUN wget https://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz && \ + tar xzvf autoconf-2.69.tar.gz && \ + rm autoconf-2.69.tar.gz +WORKDIR /root/autoconf-2.69 +RUN ./configure + +COPY autoconf_build.sh /root/autoconf-2.69/autoconf_build.sh +COPY autoconf_build.sh /root/autoconf-2.69/Rikerfile +RUN chmod +x /root/autoconf-2.69/Rikerfile +RUN chmod +x autoconf_build.sh \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/autoconf_build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/autoconf_build.sh new file mode 100755 index 00000000..69f73e8c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/autoconf_build.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +make clean all --quiet \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/run b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/run new file mode 100755 index 00000000..f7b2bec3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/autoconf/run @@ -0,0 +1,103 @@ +#!/usr/bin/env python3 + +import argparse +import os +from subprocess import run, PIPE +from pathlib import Path + +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=0, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['baseline', 'hs-only', 'all'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() + +def convert_time_to_float(time): + time = time.split("m") + return float(time[0]) * 60 + float(time[1][:-1]) + +def do_baseline_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/autoconf:latest", "/bin/bash", "-c", "time sh ./autoconf_build.sh"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_strace_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/autoconf:latest", "/bin/bash", "-c", "time strace -y -f --seccomp-bpf --trace=fork,clone,%file -o strace_trace bash -c \"./autoconf_build.sh\""], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_hs_run(window, log, env): + if log: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/autoconf:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh -d 2 --window {window} /root/autoconf-2.69/autoconf_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + else: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/autoconf:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh --window {window} /root/autoconf-2.69/autoconf_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time), result.stderr.decode() + +def do_riker_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/autoconf:latest", "/bin/bash", "-c", "time rkr --log ir &> riker_trace"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + + return convert_time_to_float(time) + +if __name__ == "__main__": + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + + if (args.log == "enable"): + log = True + else: + log = False + + run_all = args.target == "all" + run_hs = args.target == "hs-only" + run_baseline = args.target == "baseline" + + if not run_hs and not run_all and not run_baseline: + raise("Not running anything, add --target argument") + if not "PASH_SPEC_TOP" in os.environ: + raise("PASH_SPEC_TOP is not set") + + output_base = Path(os.path.expandvars("$PASH_SPEC_TOP/report/output/" + os.sep.join(test_base.parts[-1:]))) + output_base.mkdir(parents=True, exist_ok=True) + + if run_all: + baseline_time = do_baseline_run(env) + strace_time = do_strace_run(env) + riker_time = do_riker_run(env) + hs_time, hs_log = do_hs_run(args.window, log, env) + + print(f"baseline time: {baseline_time}") + print(f"strace time: {strace_time}") + print(f"Riker time: {riker_time}") + print(f"hs time: {hs_time}") + + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + with open(output_base / 'strace_time', 'w') as file: + file.write(str(strace_time)) + with open(output_base / 'riker_time', 'w') as file: + file.write(str(riker_time)) + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_hs: + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_baseline: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + else: + raise("Not running anything, add --target argument") diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/Dockerfile b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/Dockerfile new file mode 100644 index 00000000..3265d078 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/Dockerfile @@ -0,0 +1,16 @@ +FROM hs-riker + +RUN apt-get update +RUN apt-get install -y git gcc-11 make libreadline-dev bsdmainutils +RUN update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-11 1 + +WORKDIR /root +RUN git clone https://github.com/lcn2/calc.git + +WORKDIR /root/calc +RUN git checkout 3d33c6c6f498d4d391918d34c55fe37191db53d8 + +COPY calc_build.sh /root/calc/calc_build.sh +COPY calc_build.sh /root/calc/Rikerfile +RUN chmod +x /root/calc/Rikerfile +RUN chmod +x /root/calc/calc_build.sh diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/README.md b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/README.md new file mode 100644 index 00000000..1f5592b0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/README.md @@ -0,0 +1,23 @@ +## Running instructions + +Build the image `docker build -t hs/calc .` from this directory. + +Running with HS +`docker run --privileged --rm hs/calc:latest /bin/bash -c 'time /srv/hs/pash-spec.sh /root/calc/calc_build.sh && file /root/calc/calc'` + +``` +real 2m15.044s +user 2m9.292s +sys 0m52.000s +/root/calc/calc: ELF 64-bit LSB pie executable, x86-64, version 1 (SYSV), dynamically linked, interpreter /lib64/ld-linux-x86-64.so.2, BuildID[sha1]=e5bf6a86a5493060a783b6169950bba1265b4c70, for GNU/Linux 3.2.0, with debug_info, not stripped +``` + +Running with shell +`docker run --privileged --rm hs/calc:latest /bin/bash -c 'time sh /root/calc/calc_build.sh && file /root/calc/calc'` + +``` +real 0m8.590s +user 0m7.760s +sys 0m0.820s +/root/calc/calc: ELF 64-bit LSB pie executable, x86-64, version 1 (SYSV), dynamically linked, interpreter /lib64/ld-linux-x86-64.so.2, BuildID[sha1]=e5bf6a86a5493060a783b6169950bba1265b4c70, for GNU/Linux 3.2.0, with debug_info, not stripped +``` diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/calc_build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/calc_build.sh new file mode 100755 index 00000000..69f73e8c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/calc_build.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +make clean all --quiet \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/run b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/run new file mode 100755 index 00000000..e2498145 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/calc/run @@ -0,0 +1,104 @@ +#!/usr/bin/env python3 + +import argparse +import os +from subprocess import run, PIPE +from pathlib import Path + +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=0, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['baseline', 'hs-only', 'all'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() + +def convert_time_to_float(time): + time = time.split("m") + return float(time[0]) * 60 + float(time[1][:-1]) + +def do_baseline_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/calc:latest", "/bin/bash", "-c", "time sh /root/calc/calc_build.sh"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_strace_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/calc:latest", "/bin/bash", "-c", "time strace -y -f --seccomp-bpf --trace=fork,clone,%file -o strace_trace bash -c \"/root/calc/calc_build.sh\""], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_hs_run(window, log, env): + if log: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/calc:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh -d 2 --window {window} /root/calc/calc_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + else: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/calc:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh --window {window} /root/calc/calc_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time), result.stderr.decode() + +def do_riker_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/calc:latest", "/bin/bash", "-c", "time rkr --log ir &> riker_trace"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + + return convert_time_to_float(time) + +if __name__ == "__main__": + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + + if (args.log == "enable"): + log = True + else: + log = False + + run_all = args.target == "all" + run_hs = args.target == "hs-only" + run_baseline = args.target == "baseline" + + if not run_hs and not run_all and not run_baseline: + raise("Not running anything, add --target argument") + if not "PASH_SPEC_TOP" in os.environ: + raise("PASH_SPEC_TOP is not set") + + output_base = Path(os.path.expandvars("$PASH_SPEC_TOP/report/output/" + os.sep.join(test_base.parts[-1:]))) + output_base.mkdir(parents=True, exist_ok=True) + + if run_all: + baseline_time = do_baseline_run(env) + strace_time = do_strace_run(env) + riker_time = do_riker_run(env) + hs_time, hs_log = do_hs_run(args.window, log, env) + + print(f"baseline time: {baseline_time}") + print(f"strace time: {strace_time}") + print(f"Riker time: {riker_time}") + print(f"hs time: {hs_time}") + + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + with open(output_base / 'strace_time', 'w') as file: + file.write(str(strace_time)) + with open(output_base / 'riker_time', 'w') as file: + file.write(str(riker_time)) + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_hs: + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_baseline: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + else: + raise("Not running anything, add --target argument") + diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/Dockerfile b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/Dockerfile new file mode 100644 index 00000000..3a81ec37 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/Dockerfile @@ -0,0 +1,18 @@ +FROM hs-riker + +RUN apt-get update && apt-get install -y git wget gcc make libgmp-dev perl libacl1-dev libattr1-dev libcap-dev + +WORKDIR / + +RUN wget --no-clobber https://ftp.gnu.org/gnu/coreutils/coreutils-8.32.tar.gz +RUN tar xzf coreutils-8.32.tar.gz +RUN rm coreutils-8.32.tar.gz + +WORKDIR /coreutils-8.32 +ENV FORCE_UNSAFE_CONFIGURE=1 + +RUN test -f Makefile || ./configure +COPY coreutils_build.sh /coreutils-8.32/coreutils_build.sh +COPY coreutils_build.sh /coreutils-8.32/Rikerfile +RUN chmod +x /coreutils-8.32/Rikerfile +RUN chmod +x /coreutils-8.32/coreutils_build.sh \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/coreutils_build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/coreutils_build.sh new file mode 100755 index 00000000..69f73e8c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/coreutils_build.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +make clean all --quiet \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/run b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/run new file mode 100755 index 00000000..c970b73b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/coreutils/run @@ -0,0 +1,103 @@ +#!/usr/bin/env python3 + +import argparse +import os +from subprocess import run, PIPE +from pathlib import Path + +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=0, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['baseline', 'hs-only', 'all'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() + +def convert_time_to_float(time): + time = time.split("m") + return float(time[0]) * 60 + float(time[1][:-1]) + +def do_baseline_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/coreutils:latest", "/bin/bash", "-c", "time sh /coreutils-8.32/coreutils_build.sh"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_strace_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/coreutils:latest", "/bin/bash", "-c", "time strace -y -f --seccomp-bpf --trace=fork,clone,%file -o strace_trace bash -c \"/coreutils-8.32/coreutils_build.sh\""], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_hs_run(window, log, env): + if log: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/coreutils:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh -d 2 --window {window} /coreutils-8.32/coreutils_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + else: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/coreutils:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh --window {window} /coreutils-8.32/coreutils_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time), result.stderr.decode() + +def do_riker_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/coreutils:latest", "/bin/bash", "-c", "time rkr --log ir &> riker_trace"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + + return convert_time_to_float(time) + +if __name__ == "__main__": + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + + if (args.log == "enable"): + log = True + else: + log = False + + run_all = args.target == "all" + run_hs = args.target == "hs-only" + run_baseline = args.target == "baseline" + + if not run_hs and not run_all and not run_baseline: + raise("Not running anything, add --target argument") + if not "PASH_SPEC_TOP" in os.environ: + raise("PASH_SPEC_TOP is not set") + + output_base = Path(os.path.expandvars("$PASH_SPEC_TOP/report/output/" + os.sep.join(test_base.parts[-1:]))) + output_base.mkdir(parents=True, exist_ok=True) + + if run_all: + baseline_time = do_baseline_run(env) + strace_time = do_strace_run(env) + riker_time = do_riker_run(env) + hs_time, hs_log = do_hs_run(args.window, log, env) + + print(f"baseline time: {baseline_time}") + print(f"strace time: {strace_time}") + print(f"Riker time: {riker_time}") + print(f"hs time: {hs_time}") + + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + with open(output_base / 'strace_time', 'w') as file: + file.write(str(strace_time)) + with open(output_base / 'riker_time', 'w') as file: + file.write(str(riker_time)) + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_hs: + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_baseline: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + else: + raise("Not running anything, add --target argument") diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/Dockerfile b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/Dockerfile new file mode 100644 index 00000000..87e50ce8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/Dockerfile @@ -0,0 +1,18 @@ +FROM hs-riker + +RUN apt-get update && apt-get install -y git clang cmake + +WORKDIR / + +RUN git clone https://github.com/llvm/llvm-project.git +WORKDIR /llvm-project +RUN git checkout d28af7c654d8db0b68c175db5ce212d74fb5e9bc +RUN rm -rf llvm-build && mkdir llvm-build + +WORKDIR /llvm-project/llvm-build +RUN cmake -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DCMAKE_BUILD_TYPE=Release -DLLVM_TARGETS_TO_BUILD=X86 -DLLVM_ENABLE_BINDINGS=0 ../llvm + +COPY llvm_build.sh /llvm-project/llvm-build/llvm_build.sh +COPY llvm_build.sh /llvm-project/llvm-build/Rikerfile +RUN chmod +x /llvm-project/llvm-build/Rikerfile +RUN chmod +x /llvm-project/llvm-build/llvm_build.sh \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/llvm_build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/llvm_build.sh new file mode 100755 index 00000000..038de9af --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/llvm_build.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +make --always-make \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/run b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/run new file mode 100755 index 00000000..985a0360 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/llvm/run @@ -0,0 +1,107 @@ +#!/usr/bin/env python3 + +import argparse +import os +from subprocess import run, PIPE +from pathlib import Path + +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=0, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['baseline', 'hs-only', 'all'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() + +def convert_time_to_float(time): + time = time.split("m") + return float(time[0]) * 60 + float(time[1][:-1]) + +def do_baseline_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/llvm:latest", "/bin/bash", "-c", "time sh /llvm-project/llvm-build/llvm_build.sh"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_strace_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/llvm:latest", "/bin/bash", "-c", "time strace -y -f --seccomp-bpf --trace=fork,clone,%file -o strace_trace bash -c \"/llvm-project/llvm-build/llvm_build.sh\""], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + # print(result.stderr.decode()) + return convert_time_to_float(time) + +def do_hs_run(window, log, env): + if log: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/llvm:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh -d 2 --window {window} /llvm-project/llvm-build/llvm_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + else: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/llvm:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh --window {window} /llvm-project/llvm-build/llvm_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + + print(result.stderr.decode().split("\n")) + print(result.stdout.decode().split("\n")) + return convert_time_to_float(time), result.stderr.decode() + +def do_riker_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/llvm:latest", "/bin/bash", "-c", "time rkr --log ir &> riker_trace"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + # print(result.stderr.decode()) + return convert_time_to_float(time) + +if __name__ == "__main__": + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + + if (args.log == "enable"): + log = True + else: + log = False + + run_all = args.target == "all" + run_hs = args.target == "hs-only" + run_baseline = args.target == "baseline" + + if not run_hs and not run_all and not run_baseline: + raise("Not running anything, add --target argument") + if not "PASH_SPEC_TOP" in os.environ: + raise("PASH_SPEC_TOP is not set") + + output_base = Path(os.path.expandvars("$PASH_SPEC_TOP/report/output/" + os.sep.join(test_base.parts[-1:]))) + output_base.mkdir(parents=True, exist_ok=True) + + if run_all: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + strace_time = do_strace_run(env) + print(f"strace time: {strace_time}") + riker_time = do_riker_run(env) + print(f"Riker time: {riker_time}") + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + with open(output_base / 'strace_time', 'w') as file: + file.write(str(strace_time)) + with open(output_base / 'riker_time', 'w') as file: + file.write(str(riker_time)) + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_hs: + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_baseline: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + else: + raise("Not running anything, add --target argument") + diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/Dockerfile b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/Dockerfile new file mode 100644 index 00000000..3e9cde75 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/Dockerfile @@ -0,0 +1,19 @@ +FROM hs-riker + +RUN apt-get update && apt-get install -y wget \ + gcc \ + make + +WORKDIR / + +RUN wget http://ftp.gnu.org/gnu/make/make-4.3.tar.gz && \ + tar xzf make-4.3.tar.gz && \ + rm make-4.3.tar.gz +WORKDIR /make-4.3 +RUN ./configure && \ + make clean + +COPY make_build.sh /make-4.3/make_build.sh +COPY make_build.sh /make-4.3/Rikerfile +RUN chmod +x /make-4.3/Rikerfile +RUN chmod +x /make-4.3/make_build.sh \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/make_build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/make_build.sh new file mode 100755 index 00000000..69f73e8c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/make_build.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +make clean all --quiet \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/run b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/run new file mode 100755 index 00000000..099e4238 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/make/run @@ -0,0 +1,104 @@ +#!/usr/bin/env python3 + +import argparse +import os +from subprocess import run, PIPE +from pathlib import Path + +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=0, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['baseline', 'hs-only', 'all'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() + +def convert_time_to_float(time): + time = time.split("m") + return float(time[0]) * 60 + float(time[1][:-1]) + +def do_baseline_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/make:latest", "/bin/bash", "-c", "time sh /make-4.3/make_build.sh"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_strace_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/make:latest", "/bin/bash", "-c", "time strace -y -f --seccomp-bpf --trace=fork,clone,%file -o strace_trace bash -c \"/make-4.3/make_build.sh\""], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + # print(result.stderr.decode()) + return convert_time_to_float(time) + +def do_hs_run(window, log, env): + if log: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/make:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh -d 2 --window {window} /make-4.3/make_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + else: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/make:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh --window {window} /make-4.3/make_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time), result.stderr.decode() + +def do_riker_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/make:latest", "/bin/bash", "-c", "time rkr --log ir &> riker_trace"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + + return convert_time_to_float(time) + +if __name__ == "__main__": + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + + if (args.log == "enable"): + log = True + else: + log = False + + run_all = args.target == "all" + run_hs = args.target == "hs-only" + run_baseline = args.target == "baseline" + + if not run_hs and not run_all and not run_baseline: + raise("Not running anything, add --target argument") + if not "PASH_SPEC_TOP" in os.environ: + raise("PASH_SPEC_TOP is not set") + + output_base = Path(os.path.expandvars("$PASH_SPEC_TOP/report/output/" + os.sep.join(test_base.parts[-1:]))) + output_base.mkdir(parents=True, exist_ok=True) + + if run_all: + baseline_time = do_baseline_run(env) + strace_time = do_strace_run(env) + riker_time = do_riker_run(env) + hs_time, hs_log = do_hs_run(args.window, log, env) + + print(f"baseline time: {baseline_time}") + print(f"strace time: {strace_time}") + print(f"Riker time: {riker_time}") + print(f"hs time: {hs_time}") + + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + with open(output_base / 'strace_time', 'w') as file: + file.write(str(strace_time)) + with open(output_base / 'riker_time', 'w') as file: + file.write(str(riker_time)) + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_hs: + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_baseline: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + else: + raise("Not running anything, add --target argument") diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/Dockerfile b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/Dockerfile new file mode 100644 index 00000000..497017c2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/Dockerfile @@ -0,0 +1,19 @@ +FROM hs-riker + +WORKDIR / + +RUN apt-get update && apt-get install -y git make gcc autoconf libtool g++ + +RUN git clone https://github.com/protocolbuffers/protobuf.git +WORKDIR /protobuf +RUN git checkout 909a0f36a10075c4b4bc70fdee2c7e32dd612a72 + +RUN autoreconf -i +RUN ./autogen.sh +RUN test -f Makefile || ./configure +RUN make clean + +COPY protobuf_build.sh /protobuf/protobuf_build.sh +COPY protobuf_build.sh /protobuf/Rikerfile +RUN chmod +x /protobuf/Rikerfile +RUN chmod +x /protobuf/protobuf_build.sh \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/protobuf_build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/protobuf_build.sh new file mode 100755 index 00000000..69f73e8c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/protobuf_build.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +make clean all --quiet \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/run b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/run new file mode 100755 index 00000000..673e5de7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/NEEDS_CLEANUP/protobuf/run @@ -0,0 +1,104 @@ +#!/usr/bin/env python3 + +import argparse +import os +from subprocess import run, PIPE +from pathlib import Path + +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=0, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['baseline', 'hs-only', 'all'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() + +def convert_time_to_float(time): + time = time.split("m") + return float(time[0]) * 60 + float(time[1][:-1]) + +def do_baseline_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/protobuf:latest", "/bin/bash", "-c", "time sh /protobuf/protobuf_build.sh"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time) + +def do_strace_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/protobuf:latest", "/bin/bash", "-c", "time strace -y -f --seccomp-bpf --trace=fork,clone,%file -o strace_trace bash -c \"/protobuf/protobuf_build.sh\""], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + # print(result.stderr.decode()) + return convert_time_to_float(time) + +def do_hs_run(window, log, env): + if log: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/protobuf:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh -d 2 --window {window} /protobuf/protobuf_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + else: + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/protobuf:latest", "/bin/bash", "-c", f"time /srv/hs/pash-spec.sh --window {window} /protobuf/protobuf_build.sh &> hs_trace"], stdout=PIPE, stderr=PIPE, env=env) + + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + return convert_time_to_float(time), result.stderr.decode() + +def do_riker_run(env): + result = run(["sudo", "docker", "run", "--privileged", "--rm", "hs/protobuf:latest", "/bin/bash", "-c", "time rkr --log ir &> riker_trace"], stdout=PIPE, stderr=PIPE, env=env) + time = result.stderr.decode().split("\n")[-4].split("\t")[1] + + return convert_time_to_float(time) + +if __name__ == "__main__": + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + + if (args.log == "enable"): + log = True + else: + log = False + + run_all = args.target == "all" + run_hs = args.target == "hs-only" + run_baseline = args.target == "baseline" + + if not run_hs and not run_all and not run_baseline: + raise("Not running anything, add --target argument") + if not "PASH_SPEC_TOP" in os.environ: + raise("PASH_SPEC_TOP is not set") + + output_base = Path(os.path.expandvars("$PASH_SPEC_TOP/report/output/" + os.sep.join(test_base.parts[-1:]))) + output_base.mkdir(parents=True, exist_ok=True) + + if run_all: + baseline_time = do_baseline_run(env) + strace_time = do_strace_run(env) + riker_time = do_riker_run(env) + hs_time, hs_log = do_hs_run(args.window, log, env) + + print(f"baseline time: {baseline_time}") + print(f"strace time: {strace_time}") + print(f"Riker time: {riker_time}") + print(f"hs time: {hs_time}") + + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + with open(output_base / 'strace_time', 'w') as file: + file.write(str(strace_time)) + with open(output_base / 'riker_time', 'w') as file: + file.write(str(riker_time)) + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_hs: + hs_time, hs_log = do_hs_run(args.window, log, env) + print(f"hs time: {hs_time}") + with open(output_base / 'hs_time', 'w') as file: + file.write(str(hs_time)) + if log: + with open(output_base / 'hs_log', 'w') as file: + file.write(hs_log) + elif run_baseline: + baseline_time = do_baseline_run(env) + print(f"baseline time: {baseline_time}") + with open(output_base / 'baseline_time', 'w') as file: + file.write(str(baseline_time)) + else: + raise("Not running anything, add --target argument") diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/WITH_DOCKER/setup b/infrastructure/systems/GNU-Parallel/riker/migrating/WITH_DOCKER/setup new file mode 100755 index 00000000..c8fd8acd --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/WITH_DOCKER/setup @@ -0,0 +1,10 @@ +#!/bin/bash + +echo please ensure you build the Dockerfile at the root of the repo with the tag hs +# Building riker on top of the base hs image +sudo docker build -t hs-riker ./benchmarks/riker/ + +for experiment in autoconf calc coreutils llvm lsof lua make memcached protobuf redis sqlite vim xz xz-clang; do + echo "Building hs/$experiment docker image..." + sudo docker build -t hs/$experiment ./benchmarks/riker/$experiment/ +done diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/build.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/build.sh new file mode 100755 index 00000000..8c326cef --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/build.sh @@ -0,0 +1,32 @@ +#!/bin/sh + +CFLAGS="-DLINUXV=54114 -DGLIBCV=231 -DHASIPv6 -DNEEDS_NETINET_TCPH -DHASUXSOCKEPT -DHASPTYEPT -DHASSOSTATE -DHASSOOPT -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DHAS_STRFTIME -DLSOF_VSTR=\"5.4.114\" -O -Wno-format-truncation" + +# Build lib/liblsof.a +cd lib + +rm -f *.o +cc $CFLAGS -c *.c +ar cr liblsof.a *.o +ranlib liblsof.a +rm -f *.o + +cd .. + +# Generate version.h +rm -f version.h +echo '#define LSOF_BLDCMT ""' > version.h; +echo '#define LSOF_CC "cc"' >> version.h +echo '#define LSOF_CCV "'`cc -v 2>&1 | sed -n 's/.*version \(.*\)/\1/p'`'"' >> version.h +echo '#define LSOF_CCDATE "'`date`'"' >> version.h +echo '#define LSOF_CCFLAGS "'`echo $CFLAGS | sed 's/\\\\(/\\(/g' | sed 's/\\\\)/\\)/g' | sed 's/"/\\\\"/g'`'"' >> version.h +echo '#define LSOF_CINFO ""' >> version.h +echo '#define LSOF_HOST "'`uname -n`'"' >> version.h +echo '#define LSOF_LDFLAGS "-L./lib -llsof "' >> version.h +echo '#define LSOF_LOGNAME "'`whoami`'"' >> version.h +echo '#define LSOF_SYSINFO "'`uname -a`'"' >> version.h +echo '#define LSOF_USER "'`whoami`'"' >> version.h +sed '/VN/s/.ds VN \(.*\)/#define LSOF_VERSION "\1"/' < version >> version.h + +# Now build the lsof executable +cc $CFLAGS -o lsof *.c -L./lib -lnsl -ltirpc \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/cleanup.sh new file mode 100755 index 00000000..8eef5cb8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/lsof" + +rm -rf "$input_dir/dev" diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/deps.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/deps.sh new file mode 100755 index 00000000..06eeb0d9 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/deps.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +sudo apt install -y gcc libtirpc-dev diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/input.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/input.sh new file mode 100755 index 00000000..413d65ab --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/input.sh @@ -0,0 +1,12 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/lsof" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/lsof-org/lsof.git "$input_dir/dev" +git -C "$input_dir/dev" checkout 005e014e1abdadb2493d8b3ce87b37a2c0a2351d +(cd "$input_dir/dev" && "$input_dir/dev/Configure" -n linux) + diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/run.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/run.sh new file mode 100755 index 00000000..f45bfcb3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/run.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/lsof/dev" && $BENCHMARK_SHELL "$scripts_dir/lsof/build.sh") + diff --git a/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/verify.sh b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/verify.sh new file mode 100755 index 00000000..28894d87 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/migrating/lsof/verify.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +# no verification at this time diff --git a/infrastructure/systems/GNU-Parallel/riker/run.sh b/infrastructure/systems/GNU-Parallel/riker/run.sh new file mode 100755 index 00000000..6174cec1 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/run.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" + +for bench in "$scripts_dir"/*; do + "$bench/run.sh" $@ +done + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/README.md b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/README.md new file mode 100644 index 00000000..88513dbb --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/README.md @@ -0,0 +1,25 @@ +## Running instructions + +`git pull ghcr.io/binpash/hs/lua:latest` + +Or build it yourself by running `docker build -t hs/lua .` from this directory. + +Running with HS +`docker run --privileged -it --rm ghcr.io/binpash/hs/lua:latest /bin/bash -c 'time /srv/hs/pash-spec.sh /root/lua-5.4.3/lua_build.sh &> /dev/null && sha256sum /root/lua-5.4.3/src/lua'` + +``` +real 0m6.121s +user 0m5.379s +sys 0m1.111s +aeefc061ed3bb3f6831fcabf5e09f4f9dc53c5dbb91f0858230baf47bff25701 /root/lua-5.4.3/src/lua +``` + +Running with shell +`docker run --privileged -it --rm ghcr.io/binpash/hs/lua:latest /bin/bash -c 'time sh /root/lua-5.4.3/lua_build.sh &> /dev/null && sha256sum /root/lua-5.4.3/src/lua'` + +``` +real 0m3.155s +user 0m2.934s +sys 0m0.221s +aeefc061ed3bb3f6831fcabf5e09f4f9dc53c5dbb91f0858230baf47bff25701 /root/lua-5.4.3/src/lua +``` diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/build.sh new file mode 100755 index 00000000..31b77b6b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/build.sh @@ -0,0 +1,26 @@ +#!/bin/sh + +# CFLAGS="-std=gnu99 -O2 -Wall -Wextra -DLUA_COMPAT_5_3 -DLUA_USE_LINUX" + +# gcc $CFLAGS -c `ls *.c | grep -v lua_` + +# ar rcu liblua.a lapi.o lcode.o lctype.o ldebug.o ldo.o ldump.o lfunc.o lgc.o llex.o lmem.o lobject.o lopcodes.o lparser.o lstate.o lstring.o ltable.o ltm.o lundump.o lvm.o lzio.o lauxlib.o lbaselib.o lcorolib.o ldblib.o liolib.o lmathlib.o loadlib.o loslib.o lstrlib.o ltablib.o lutf8lib.o linit.o +# ranlib liblua.a + +# gcc $CFLAGS -c -o lua.o lua.c +# gcc -std=gnu99 -o lua lua.o liblua.a -lm -Wl,-E -ldl +# gcc $CFLAGS -c -o luac.o luac.c +# gcc -std=gnu99 -o luac luac.o liblua.a -lm -Wl,-E -ldl + + +CFLAGS="-std=gnu99 -O2 -Wall -Wextra -DLUA_COMPAT_5_3 -DLUA_USE_LINUX" + +ls *.c | grep -v lua_ | parallel --jobs "gcc $CFLAGS -c {}" + +ar rcu liblua.a lapi.o lcode.o lctype.o ldebug.o ldo.o ldump.o lfunc.o lgc.o llex.o lmem.o lobject.o lopcodes.o lparser.o lstate.o lstring.o ltable.o ltm.o lundump.o lvm.o lzio.o lauxlib.o lbaselib.o lcorolib.o ldblib.o liolib.o lmathlib.o loadlib.o loslib.o lstrlib.o ltablib.o lutf8lib.o linit.o +ranlib liblua.a + +gcc $CFLAGS -c -o lua.o lua.c +gcc -std=gnu99 -o lua lua.o liblua.a -lm -Wl,-E -ldl +gcc $CFLAGS -c -o luac.o luac.c +gcc -std=gnu99 -o luac luac.o liblua.a -lm -Wl,-E -ldl \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/cleanup.sh new file mode 100755 index 00000000..2a4f4bd7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/lua" + +rm -rf "$input_dir" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/deps.sh new file mode 100755 index 00000000..835325f8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/deps.sh @@ -0,0 +1,4 @@ +#!/bin/bash + +sudo apt install -y gcc make wget + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/input.sh new file mode 100755 index 00000000..8b1eba96 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/input.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/lua" + +mkdir -p "$input_dir" + +tar_path="$input_dir/lua-5.4.3.tar.gz" +wget https://www.lua.org/ftp/lua-5.4.3.tar.gz -O "$tar_path" +tar xzf "$tar_path" -C "$input_dir" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/run.sh new file mode 100755 index 00000000..662fdeaa --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/run.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/lua/lua-5.4.3/src" && $BENCHMARK_SHELL "$scripts_dir/lua/build.sh") + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/lua/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/verify.sh new file mode 100755 index 00000000..b350e7d1 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/lua/verify.sh @@ -0,0 +1,9 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +"$input_dir/scripts/lua/lua-5.4.3/src/lua" -e 'print("Hello, Riker!")' | diff -q - <(echo "Hello, Riker!") +echo riker/lua $? diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/build.sh new file mode 100755 index 00000000..5727f361 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/build.sh @@ -0,0 +1,33 @@ +#!/bin/sh + +CFLAGS="-DHAVE_CONFIG_H -I. -g -O2 -pthread -pthread -Wall -pedantic -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls" + +MEMCACHED_SRC="memcached.c hash.c jenkins_hash.c murmur3_hash.c slabs.c items.c assoc.c thread.c daemon.c stats_prefix.c util.c cache.c bipbuffer.c logger.c crawler.c itoa_ljust.c slab_automove.c authfile.c restart.c extstore.c crc32c.c storage.c slab_automove_extstore.c" + +TESTAPP_SRC="testapp.c util.c stats_prefix.c jenkins_hash.c murmur3_hash.c cache.c crc32c.c" + +# Conditionals to handle changes in memcached build over the 100 commits +if [ -f "proto_text.c" ]; +then + MEMCACHED_SRC="$MEMCACHED_SRC proto_text.c proto_bin.c" +else + TESTAPP_SRC="$TESTAPP_SRC hash.c" +fi + +# # Build the release version of memcached +# gcc $CFLAGS -DNDEBUG -o memcached $MEMCACHED_SRC -levent +# # Build the debug version of memcached +# gcc $CFLAGS -fprofile-arcs -ftest-coverage -DMEMCACHED_DEBUG -o memcached-debug $MEMCACHED_SRC -levent +# # Build the sizes executable +# gcc $CFLAGS -o sizes sizes.c -levent +# # Build the testapp executable +# gcc $CFLAGS -o testapp $TESTAPP_SRC -levent +# # Build the timedrun executable +# gcc $CFLAGS -o timedrun timedrun.c -levent + +parallel ::: \ + "gcc $CFLAGS -DNDEBUG -o memcached $MEMCACHED_SRC -levent" \ + "gcc $CFLAGS -fprofile-arcs -ftest-coverage -DMEMCACHED_DEBUG -o memcached-debug $MEMCACHED_SRC -levent" \ + "gcc $CFLAGS -o sizes sizes.c -levent" \ + "gcc $CFLAGS -o testapp $TESTAPP_SRC -levent" \ + "gcc $CFLAGS -o timedrun timedrun.c -levent" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/cleanup.sh new file mode 100755 index 00000000..2597e5e0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/memcached" + +rm -rf "$input_dir/dev" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/deps.sh new file mode 100755 index 00000000..add3c533 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/deps.sh @@ -0,0 +1,9 @@ +#!/bin/bash + +sudo apt-get install -y git \ + gcc \ + autotools-dev \ + automake \ + libevent-dev + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/input.sh new file mode 100755 index 00000000..5e606e2f --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/input.sh @@ -0,0 +1,16 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/memcached" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/memcached/memcached.git "$input_dir/dev" +git -C "$input_dir/dev" checkout c472369fed5981ba8c004d426cee62d5165c47ca + +(cd "$input_dir/dev" && "$input_dir/dev/autogen.sh") + +(cd "$input_dir/dev" && "$input_dir/dev/configure" --disable-dependency-tracking) + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/run.sh new file mode 100755 index 00000000..39f65c0c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/run.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/memcached/dev" && $BENCHMARK_SHELL "$scripts_dir/memcached/build.sh") + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/verify.sh new file mode 100755 index 00000000..5398c364 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/memcached/verify.sh @@ -0,0 +1,9 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +"$input_dir/scripts/memcached/dev/memcached" --version | diff -q - <(echo memcached 1.6.9) +echo riker/memcached $? diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/README.md b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/README.md new file mode 100644 index 00000000..acd564c5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/README.md @@ -0,0 +1,25 @@ +## Running instructions + +`git pull ghcr.io/binpash/hs/redis:latest` + +Or build it yourself by running `docker build -t hs/redis .` from this directory. + +Running with HS +`docker run --privileged --rm ghcr.io/binpash/hs/redis:latest /bin/bash -c 'time /srv/hs/pash-spec.sh /root/redis/redis_build.sh && file /root/redis/src/redis-server'` + +``` +real 0m24.309s +user 0m20.368s +sys 0m3.903s +/root/redis/src/redis-server: ELF 64-bit LSB pie executable, x86-64, version 1 (SYSV), dynamically linked, interpreter /lib64/ld-linux-x86-64.so.2, BuildID[sha1]=36a1f18dbce7bf35eafe05da751f2d6906578341, for GNU/Linux 3.2.0, with debug_info, not stripped +``` + +Running with shell +`docker run --privileged --rm ghcr.io/binpash/hs/redis:latest /bin/bash -c 'time sh /root/redis/redis_build.sh && file /root/redis/src/redis-server'` + +``` +real 0m14.515s +user 0m13.439s +sys 0m0.800s +/root/redis/src/redis-server: ELF 64-bit LSB pie executable, x86-64, version 1 (SYSV), dynamically linked, interpreter /lib64/ld-linux-x86-64.so.2, BuildID[sha1]=e4bf8517ffe0c4edf32515ca936b6be5dc22a034, for GNU/Linux 3.2.0, with debug_info, not stripped +``` diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/build.sh new file mode 100755 index 00000000..645fd58b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/build.sh @@ -0,0 +1,63 @@ +#!/bin/sh + +# Regenerate the release.h file +# GIT_SHA1=`(git show-ref --head --hash=8 2> /dev/null || echo 00000000) | head -n1` +# GIT_DIRTY=`git diff --no-ext-diff 2> /dev/null | wc -l` +# BUILD_ID=`uname -n`"-"`date +%s` +# echo "#define REDIS_GIT_SHA1 \"$GIT_SHA1\"" > release.h +# echo "#define REDIS_GIT_DIRTY \"$GIT_DIRTY\"" >> release.h +# echo "#define REDIS_BUILD_ID \"$BUILD_ID\"" >> release.h + +# CFLAGS="-g -ggdb -pedantic -DREDIS_STATIC= -std=c11 -Wall -W -Wno-missing-field-initializers -O2 -g -ggdb -I../deps/hiredis -I../deps/linenoise -I../deps/lua/src -I../deps/hdr_histogram -DUSE_JEMALLOC -I../deps/jemalloc/include" +# LDFLAGS="-rdynamic ../deps/hiredis/libhiredis.a ../deps/lua/src/liblua.a ../deps/hdr_histogram/hdr_histogram.o ../deps/linenoise/linenoise.o ../deps/jemalloc/lib/libjemalloc.a -lm -lpthread -ldl" + +# # Build all source files except the ae_* files +# SRC="acl.c adlist.c ae.c anet.c aof.c bio.c bitops.c blocked.c childinfo.c cli_common.c cluster.c config.c connection.c crc16.c crc64.c crcspeed.c db.c debug.c defrag.c dict.c endianconv.c evict.c expire.c geo.c geohash.c geohash_helper.c gopher.c hyperloglog.c intset.c latency.c lazyfree.c listpack.c localtime.c lolwut.c lolwut5.c lolwut6.c lzf_c.c lzf_d.c memtest.c module.c monotonic.c mt19937-64.c multi.c networking.c notify.c object.c pqsort.c pubsub.c quicklist.c rand.c rax.c rdb.c redis-benchmark.c redis-check-aof.c redis-check-rdb.c redis-cli.c release.c replication.c rio.c scripting.c sds.c sentinel.c server.c setcpuaffinity.c setproctitle.c sha1.c sha256.c siphash.c slowlog.c sort.c sparkline.c syncio.c t_hash.c t_list.c t_set.c t_stream.c t_string.c t_zset.c timeout.c tls.c tracking.c util.c ziplist.c zipmap.c zmalloc.c" +# gcc $CFLAGS -c $SRC + +# # Build redis-server +# OBJ="adlist.o quicklist.o ae.o anet.o dict.o server.o sds.o zmalloc.o lzf_c.o lzf_d.o pqsort.o zipmap.o sha1.o ziplist.o release.o networking.o util.o object.o db.o replication.o rdb.o t_string.o t_list.o t_set.o t_zset.o t_hash.o config.o aof.o pubsub.o multi.o debug.o sort.o intset.o syncio.o cluster.o crc16.o endianconv.o slowlog.o scripting.o bio.o rio.o rand.o memtest.o crcspeed.o crc64.o bitops.o sentinel.o notify.o setproctitle.o blocked.o hyperloglog.o latency.o sparkline.o redis-check-rdb.o redis-check-aof.o geo.o lazyfree.o module.o evict.o expire.o geohash.o geohash_helper.o childinfo.o defrag.o siphash.o rax.o t_stream.o listpack.o localtime.o lolwut.o lolwut5.o lolwut6.o acl.o gopher.o tracking.o connection.o tls.o sha256.o timeout.o setcpuaffinity.o monotonic.o mt19937-64.o" +# gcc $CFLAGS -o redis-server $OBJ $LDFLAGS + +# # Build redis-cli +# OBJ="anet.o adlist.o dict.o redis-cli.o zmalloc.o release.o ae.o crcspeed.o crc64.o siphash.o crc16.o monotonic.o cli_common.o mt19937-64.o" +# gcc $CFLAGS -o redis-cli $OBJ $LDFLAGS + +# # Build redis-benchmark +# OBJ="ae.o anet.o redis-benchmark.o adlist.o dict.o zmalloc.o release.o crcspeed.o crc64.o siphash.o crc16.o monotonic.o cli_common.o mt19937-64.o" +# gcc $CFLAGS -o redis-benchmark $OBJ $LDFLAGS + +# install redis-server redis-sentinel +# install redis-server redis-check-aof +# install redis-server redis-check-rdb + +GIT_SHA1=`(git show-ref --head --hash=8 2> /dev/null || echo 00000000) | head -n1` +GIT_DIRTY=`git diff --no-ext-diff 2> /dev/null | wc -l` +BUILD_ID=`uname -n`"-"`date +%s` +echo "#define REDIS_GIT_SHA1 \"$GIT_SHA1\"" > release.h +echo "#define REDIS_GIT_DIRTY \"$GIT_DIRTY\"" >> release.h +echo "#define REDIS_BUILD_ID \"$BUILD_ID\"" >> release.h + +CFLAGS="-g -ggdb -pedantic -DREDIS_STATIC= -std=c11 -Wall -W -Wno-missing-field-initializers -O2 -g -ggdb -I../deps/hiredis -I../deps/linenoise -I../deps/lua/src -I../deps/hdr_histogram -DUSE_JEMALLOC -I../deps/jemalloc/include" +LDFLAGS="-rdynamic ../deps/hiredis/libhiredis.a ../deps/lua/src/liblua.a ../deps/hdr_histogram/hdr_histogram.o ../deps/linenoise/linenoise.o ../deps/jemalloc/lib/libjemalloc.a -lm -lpthread -ldl" + +# Build all source files except the ae_* files +SRC="acl.c adlist.c ae.c anet.c aof.c bio.c bitops.c blocked.c childinfo.c cli_common.c cluster.c config.c connection.c crc16.c crc64.c crcspeed.c db.c debug.c defrag.c dict.c endianconv.c evict.c expire.c geo.c geohash.c geohash_helper.c gopher.c hyperloglog.c intset.c latency.c lazyfree.c listpack.c localtime.c lolwut.c lolwut5.c lolwut6.c lzf_c.c lzf_d.c memtest.c module.c monotonic.c mt19937-64.c multi.c networking.c notify.c object.c pqsort.c pubsub.c quicklist.c rand.c rax.c rdb.c redis-benchmark.c redis-check-aof.c redis-check-rdb.c redis-cli.c release.c replication.c rio.c scripting.c sds.c sentinel.c server.c setcpuaffinity.c setproctitle.c sha1.c sha256.c siphash.c slowlog.c sort.c sparkline.c syncio.c t_hash.c t_list.c t_set.c t_stream.c t_string.c t_zset.c timeout.c tls.c tracking.c util.c ziplist.c zipmap.c zmalloc.c" +echo "$SRC" | tr ' ' '\n' | parallel gcc $CFLAGS -c {} + +# Build redis-server +OBJ1="adlist.o quicklist.o ae.o anet.o dict.o server.o sds.o zmalloc.o lzf_c.o lzf_d.o pqsort.o zipmap.o sha1.o ziplist.o release.o networking.o util.o object.o db.o replication.o rdb.o t_string.o t_list.o t_set.o t_zset.o t_hash.o config.o aof.o pubsub.o multi.o debug.o sort.o intset.o syncio.o cluster.o crc16.o endianconv.o slowlog.o scripting.o bio.o rio.o rand.o memtest.o crcspeed.o crc64.o bitops.o sentinel.o notify.o setproctitle.o blocked.o hyperloglog.o latency.o sparkline.o redis-check-rdb.o redis-check-aof.o geo.o lazyfree.o module.o evict.o expire.o geohash.o geohash_helper.o childinfo.o defrag.o siphash.o rax.o t_stream.o listpack.o localtime.o lolwut.o lolwut5.o lolwut6.o acl.o gopher.o tracking.o connection.o tls.o sha256.o timeout.o setcpuaffinity.o monotonic.o mt19937-64.o" + +# Build redis-cli +OBJ2="anet.o adlist.o dict.o redis-cli.o zmalloc.o release.o ae.o crcspeed.o crc64.o siphash.o crc16.o monotonic.o cli_common.o mt19937-64.o" + +# Build redis-benchmark +OBJ3="ae.o anet.o redis-benchmark.o adlist.o dict.o zmalloc.o release.o crcspeed.o crc64.o siphash.o crc16.o monotonic.o cli_common.o mt19937-64.o" +parallel --jobs 3 ::: \ + "gcc $CFLAGS -o redis-server $OBJ1 $LDFLAGS" \ + "gcc $CFLAGS -o redis-cli $OBJ2 $LDFLAGS" \ + "gcc $CFLAGS -o redis-benchmark $OBJ3 $LDFLAGS" + +install redis-server redis-sentinel +install redis-server redis-check-aof +install redis-server redis-check-rdb diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/cleanup.sh new file mode 100755 index 00000000..89e8fc27 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/redis" + +rm -rf "$input_dir/dev" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/deps.sh new file mode 100755 index 00000000..2ecdd5f5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/deps.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +sudo apt install -y git gcc make pkg-config tcl diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/input.sh new file mode 100755 index 00000000..ad398f40 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/input.sh @@ -0,0 +1,12 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/redis" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/redis/redis "$input_dir/dev" +git -C "$input_dir/dev" checkout d96f47cf06b1cc24b82109e0e87ac5428517525a +(cd "$input_dir/dev" && make .make-prerequisites) + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/run.sh new file mode 100755 index 00000000..75575c86 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/run.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/redis/dev/src" && $BENCHMARK_SHELL "$scripts_dir/redis/build.sh") + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/redis/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/verify.sh new file mode 100755 index 00000000..38047e30 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/redis/verify.sh @@ -0,0 +1,9 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +"$input_dir/scripts/redis/dev/src/redis-cli" --version | diff - <(echo "redis-cli 255.255.255 (git:d96f47cf)") +echo riker/redis $? diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/build.sh new file mode 100755 index 00000000..e98fc4f7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/build.sh @@ -0,0 +1,49 @@ +#!/bin/sh + +SRC="./src/alter.c ./src/analyze.c ./src/attach.c ./src/auth.c ./src/backup.c ./src/bitvec.c ./src/btmutex.c ./src/btree.c ./src/btree.h ./src/btreeInt.h ./src/build.c ./src/callback.c ./src/complete.c ./src/ctime.c ./src/date.c ./src/dbpage.c ./src/dbstat.c ./src/delete.c ./src/expr.c ./src/fault.c ./src/fkey.c ./src/func.c ./src/global.c ./src/hash.c ./src/hash.h ./src/hwtime.h ./src/insert.c ./src/legacy.c ./src/loadext.c ./src/main.c ./src/malloc.c ./src/mem0.c ./src/mem1.c ./src/mem2.c ./src/mem3.c ./src/mem5.c ./src/memdb.c ./src/memjournal.c ./src/msvc.h ./src/mutex.c ./src/mutex.h ./src/mutex_noop.c ./src/mutex_unix.c ./src/mutex_w32.c ./src/notify.c ./src/os.c ./src/os.h ./src/os_common.h ./src/os_setup.h ./src/os_unix.c ./src/os_win.c ./src/os_win.h ./src/pager.c ./src/pager.h ./src/parse.y ./src/pcache.c ./src/pcache.h ./src/pcache1.c ./src/pragma.c ./src/pragma.h ./src/prepare.c ./src/printf.c ./src/random.c ./src/resolve.c ./src/rowset.c ./src/select.c ./src/status.c ./src/shell.c.in ./src/sqlite.h.in ./src/sqlite3ext.h ./src/sqliteInt.h ./src/sqliteLimit.h ./src/table.c ./src/tclsqlite.c ./src/threads.c ./src/tokenize.c ./src/treeview.c ./src/trigger.c ./src/utf.c ./src/update.c ./src/upsert.c ./src/util.c ./src/vacuum.c ./src/vdbe.c ./src/vdbe.h ./src/vdbeapi.c ./src/vdbeaux.c ./src/vdbeblob.c ./src/vdbemem.c ./src/vdbesort.c ./src/vdbetrace.c ./src/vdbevtab.c ./src/vdbeInt.h ./src/vtab.c ./src/vxworks.h ./src/wal.c ./src/wal.h ./src/walker.c ./src/where.c ./src/wherecode.c ./src/whereexpr.c ./src/whereInt.h ./src/window.c ./ext/fts1/fts1.c ./ext/fts1/fts1.h ./ext/fts1/fts1_hash.c ./ext/fts1/fts1_hash.h ./ext/fts1/fts1_porter.c ./ext/fts1/fts1_tokenizer.h ./ext/fts1/fts1_tokenizer1.c ./ext/fts2/fts2.c ./ext/fts2/fts2.h ./ext/fts2/fts2_hash.c ./ext/fts2/fts2_hash.h ./ext/fts2/fts2_icu.c ./ext/fts2/fts2_porter.c ./ext/fts2/fts2_tokenizer.h ./ext/fts2/fts2_tokenizer.c ./ext/fts2/fts2_tokenizer1.c ./ext/fts3/fts3.c ./ext/fts3/fts3.h ./ext/fts3/fts3Int.h ./ext/fts3/fts3_aux.c ./ext/fts3/fts3_expr.c ./ext/fts3/fts3_hash.c ./ext/fts3/fts3_hash.h ./ext/fts3/fts3_icu.c ./ext/fts3/fts3_porter.c ./ext/fts3/fts3_snippet.c ./ext/fts3/fts3_tokenizer.h ./ext/fts3/fts3_tokenizer.c ./ext/fts3/fts3_tokenizer1.c ./ext/fts3/fts3_tokenize_vtab.c ./ext/fts3/fts3_unicode.c ./ext/fts3/fts3_unicode2.c ./ext/fts3/fts3_write.c ./ext/icu/sqliteicu.h ./ext/icu/icu.c ./ext/rtree/rtree.h ./ext/rtree/rtree.c ./ext/rtree/geopoly.c ./ext/session/sqlite3session.c ./ext/session/sqlite3session.h ./ext/userauth/userauth.c ./ext/userauth/sqlite3userauth.h ./ext/rbu/sqlite3rbu.h ./ext/rbu/sqlite3rbu.c ./ext/misc/json1.c ./ext/misc/stmt.c keywordhash.h opcodes.c opcodes.h parse.c parse.h config.h shell.c sqlite3.h" + +gcc -g -O2 -o mksourceid ./tool/mksourceid.c +tclsh8.6 ./tool/mksqlite3h.tcl . >sqlite3.h +gcc -g -O2 -o mkkeywordhash -DSQLITE_ENABLE_MATH_FUNCTIONS ./tool/mkkeywordhash.c +./mkkeywordhash >keywordhash.h +gcc -g -O2 -o lemon ./tool/lemon.c +cp ./tool/lempar.c . +cp ./src/parse.y . +./lemon -DSQLITE_ENABLE_MATH_FUNCTIONS -S parse.y +cat parse.h ./src/vdbe.c | tclsh8.6 ./tool/mkopcodeh.tcl >opcodes.h +tclsh8.6 ./tool/mkopcodec.tcl opcodes.h >opcodes.c +tclsh8.6 ./tool/mkshellc.tcl >shell.c +cp ./ext/fts5/fts5parse.y . +rm -f fts5parse.h +./lemon -S fts5parse.y +tclsh8.6 ./ext/fts5/tool/mkfts5c.tcl +cp ./ext/fts5/fts5.h . +rm -rf tsrc +mkdir tsrc + +cp -f $SRC tsrc +rm tsrc/sqlite.h.in tsrc/parse.y +tclsh8.6 ./tool/vdbe-compress.tcl vdbe.new +mv vdbe.new tsrc/vdbe.c +cp fts5.c fts5.h tsrc +touch .target_source +tclsh8.6 ./tool/mksqlite3c.tcl +cp tsrc/sqlite3ext.h . +cp ./ext/session/sqlite3session.h . + +CFLAGS="gcc -g -O2 -DSQLITE_OS_UNIX=1 -I. -I./src -I./ext/rtree -I./ext/icu -I./ext/fts3 -I./ext/async -I./ext/session -I./ext/userauth -D_HAVE_SQLITE_CONFIG_H -DBUILD_sqlite -DNDEBUG -I/usr/include/tcl8.6 -DSQLITE_THREADSAFE=1 -DSQLITE_ENABLE_MATH_FUNCTIONS -DSQLITE_HAVE_ZLIB=1" + +libtool --mode=compile --tag=CC $CFLAGS -DSQLITE_TEMP_STORE=1 -c sqlite3.c +libtool --mode=link $CFLAGS -no-undefined -o libsqlite3.la sqlite3.lo -lm -ldl -lz -lpthread -rpath "/usr/local/lib" -version-info "8:6:8" +libtool --mode=link $CFLAGS -DHAVE_READLINE=1 -I/usr/include/readline -DHAVE_EDITLINE=0 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_FTS4 -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_EXPLAIN_COMMENTS -DSQLITE_ENABLE_UNKNOWN_SQL_FUNCTION -DSQLITE_ENABLE_STMTVTAB -DSQLITE_ENABLE_DBPAGE_VTAB -DSQLITE_ENABLE_DBSTAT_VTAB -DSQLITE_ENABLE_BYTECODE_VTAB -DSQLITE_ENABLE_OFFSET_SQL_FUNC -DSQLITE_ENABLE_DESERIALIZE -o sqlite3 \ + shell.c sqlite3.c \ + -lreadline -lncurses -lm -ldl -lz -lpthread -rpath "/usr/local/lib" + +libtool --mode=compile --tag=CC $CFLAGS -DUSE_TCL_STUBS=1 -c ./src/tclsqlite.c +libtool --mode=link $CFLAGS -no-undefined -o libtclsqlite3.la tclsqlite.lo \ + libsqlite3.la -L/usr/lib/x86_64-linux-gnu -ltclstub8.6 -lm -ldl -lz -lpthread \ + -rpath "/usr/share/tcltk/tcl8.6/sqlite3" \ + -version-info "8:6:8" \ + -avoid-version + +# Not using GNU parallel because of dependencies between commands \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/cleanup.sh new file mode 100755 index 00000000..795f52e1 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/sqlite" + +rm -rf "$input_dir" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/data/hello-riker.sqlite3 b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/data/hello-riker.sqlite3 new file mode 100644 index 00000000..9bd5d79e Binary files /dev/null and b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/data/hello-riker.sqlite3 differ diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/deps.sh new file mode 100755 index 00000000..59855fe7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/deps.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +sudo apt-get install -y git \ + gcc \ + tcl8.6 \ + libtool \ + libtool-bin \ + libreadline-dev \ + tcl8.6-dev + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/input.sh new file mode 100755 index 00000000..f7c4199e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/input.sh @@ -0,0 +1,12 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/sqlite" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/sqlite/sqlite "$input_dir/dev" +git -C "$input_dir/dev" checkout c1cace0832fa2af5ab8315e217d708c09d586425 +(cd "$input_dir/dev" && "$input_dir/dev/configure") + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/run.sh new file mode 100755 index 00000000..4b8fe6f2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/run.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/sqlite/dev" && $BENCHMARK_SHELL "$scripts_dir/sqlite/build.sh") + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/verify.sh new file mode 100755 index 00000000..736bc554 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/verify.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +test_db="$scripts_dir/sqlite/data/hello-riker.sqlite3" + +"$input_dir/scripts/sqlite/dev/sqlite3" "$test_db" 'SELECT * FROM hello' | diff -q - <(echo riker) +echo riker/sqlite $? diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/wrapper.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/wrapper.sh new file mode 100755 index 00000000..32582cd7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/sqlite/wrapper.sh @@ -0,0 +1,3 @@ +#!/bin/sh + +bash sqlite_build.sh \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/vim/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/build.sh new file mode 100755 index 00000000..87bc68d3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/build.sh @@ -0,0 +1,37 @@ +#!/bin/sh +cd src + +CFLAGS='-I. -Ilibvterm/include -Iproto -DHAVE_CONFIG_H -g -O2 -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -DINLINE= -DVSNPRINTF=vim_vsnprintf -DSNPRINTF=vim_snprintf -DIS_COMBINING_FUNCTION=utf_iscomposing_uint -DWCWIDTH_FUNCTION=utf_uint2cells' + +LFLAGS='-L/usr/local/lib -Wl,--as-needed' + +LIBS='-lSM -lICE -lXt -lX11 -lXdmcp -lSM -lICE -lm -ltinfo -lselinux -ldl' + +SRC="arabic.c arglist.c autocmd.c beval.c buffer.c change.c blob.c blowfish.c cindent.c clientserver.c clipboard.c cmdexpand.c cmdhist.c crypt.c crypt_zip.c debugger.c dict.c diff.c digraph.c drawline.c drawscreen.c edit.c eval.c evalbuffer.c evalfunc.c evalvars.c evalwindow.c ex_cmds.c ex_cmds2.c ex_docmd.c ex_eval.c ex_getln.c fileio.c filepath.c findfile.c float.c fold.c getchar.c gui_xim.c hardcopy.c hashtab.c help.c highlight.c if_cscope.c if_xcmdsrv.c indent.c insexpand.c list.c locale.c map.c mark.c match.c mbyte.c memline.c menu.c misc1.c misc2.c mouse.c move.c normal.c ops.c option.c optionstr.c os_unix.c auto/pathdef.c popupmenu.c popupwin.c profiler.c pty.c quickfix.c regexp.c register.c screen.c scriptfile.c search.c session.c sha256.c sign.c sound.c spell.c spellfile.c spellsuggest.c syntax.c tag.c term.c terminal.c testing.c textformat.c textobject.c textprop.c time.c typval.c ui.c undo.c usercmd.c userfunc.c vim9compile.c vim9execute.c vim9script.c vim9type.c viminfo.c window.c bufwrite.c netbeans.c job.c channel.c xdiff/xdiffi.c xdiff/xemit.c xdiff/xprepare.c xdiff/xutils.c xdiff/xhistogram.c xdiff/xpatience.c charset.c json.c main.c memfile.c message.c version.c libvterm/src/encoding.c libvterm/src/keyboard.c libvterm/src/mouse.c libvterm/src/parser.c libvterm/src/pen.c libvterm/src/screen.c libvterm/src/state.c libvterm/src/unicode.c libvterm/src/vterm.c" + +# Generate auto/pathdef.c +echo '/* pathdef.c */' > auto/pathdef.c +echo '/* This file is automatically created by Makefile' >> auto/pathdef.c +echo ' * DO NOT EDIT! Change Makefile only. */' >> auto/pathdef.c +echo '#include "vim.h"' >> auto/pathdef.c +echo 'char_u *default_vim_dir = (char_u *)"/usr/local/share/vim";' | sed -e 's/[\\"]/\\&/g' -e 's/\\"/"/' -e 's/\\";$/";/' -e 's/ */ /g' >> auto/pathdef.c +echo 'char_u *default_vimruntime_dir = (char_u *)"";' | sed -e 's/[\\"]/\\&/g' -e 's/\\"/"/' -e 's/\\";$/";/' -e 's/ */ /g' >> auto/pathdef.c +echo 'char_u *all_cflags = (char_u *)"'$CFLAGS'";' | sed -e 's/[\\"]/\\&/g' -e 's/\\"/"/' -e 's/\\";$/";/' -e 's/ */ /g' >> auto/pathdef.c +echo 'char_u *all_lflags = (char_u *)"gcc '$LFLAGS' -o vim '$LIBS'";' | sed -e 's/[\\"]/\\&/g' -e 's/\\"/"/' -e 's/\\";$/";/' -e 's/ */ /g' >> auto/pathdef.c +echo 'char_u *compiled_user = (char_u *)"' | tr -d "\\012" >> auto/pathdef.c +# the following line was modified for POSIX compliance +logname | tr -d "\\012" >> auto/pathdef.c +echo '";' >> auto/pathdef.c +echo 'char_u *compiled_sys = (char_u *)"' | tr -d "\\012" >> auto/pathdef.c + +hostname | tr -d "\\012" >> auto/pathdef.c +echo '";' >> auto/pathdef.c +sh ./pathdef.sh + +# Generate osdef.h +CC="gcc $CFLAGS" srcdir=. sh ./osdef.sh + +# Run the build +gcc $LFLAGS $CFLAGS -o vim $SRC $LIBS + +# Not using GNU parallel because of dependencies between commands \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/vim/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/cleanup.sh new file mode 100755 index 00000000..1dbfb355 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/vim" + +rm -rf "$input_dir" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/vim/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/deps.sh new file mode 100755 index 00000000..ac6be92c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/deps.sh @@ -0,0 +1,12 @@ +#!/bin/bash + +sudo apt-get install -y git \ + gcc \ + make \ + libncurses-dev \ + libsm-dev \ + libice-dev \ + libxt-dev \ + libx11-dev \ + libxdmcp-dev \ + libselinux-dev diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/vim/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/input.sh new file mode 100755 index 00000000..d7e67dc2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/input.sh @@ -0,0 +1,13 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/vim" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/vim/vim.git "$input_dir/dev" +git -C "$input_dir/dev" checkout b836f631dba2534efd314a8f77439cebc75acd4e + +(cd "$input_dir/dev" && "$input_dir/dev/configure") + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/vim/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/run.sh new file mode 100755 index 00000000..0ec1858e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/run.sh @@ -0,0 +1,9 @@ +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/vim/dev" && $BENCHMARK_SHELL "$scripts_dir/vim/build.sh") + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/vim/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/verify.sh new file mode 100755 index 00000000..d0aaee43 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/vim/verify.sh @@ -0,0 +1,21 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +# Call compiled binary to write an empty file with a randomly chosen path. +# Must use -u /dev/null to specify a blank config because there might not be a ~/.vimrc, which vim would complain about. +# Assert that the file was created. + +vim="$input_dir/scripts/vim/dev/src/vim" +canary="$(mktemp --dry-run --tmpdir="$input_dir/scripts/vim")" + +test ! -f "$canary" +echo riker/vim/canary-did-not-exist $? + +"$vim" -u /dev/null -e -c "w $canary" -c quit + +test -f "$canary" +echo riker/vim/created-canary-file $? diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/build.sh new file mode 100755 index 00000000..0f875fea --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/build.sh @@ -0,0 +1,65 @@ +#!/bin/sh + +# CFLAGS='-DHAVE_CHECK_CRC32 -DHAVE_CHECK_CRC64 -DHAVE_CHECK_SHA256 -DHAVE_DECL_PROGRAM_INVOCATION_NAME -DHAVE_DECODERS -DHAVE_DECODER_ARM -DHAVE_DECODER_ARMTHUMB -DHAVE_DECODER_DELTA -DHAVE_DECODER_IA64 -DHAVE_DECODER_LZMA1 -DHAVE_DECODER_LZMA2 -DHAVE_DECODER_POWERPC -DHAVE_DECODER_SPARC -DHAVE_DECODER_X86 -DHAVE_ENCODERS -DHAVE_ENCODER_ARM -DHAVE_ENCODER_ARMTHUMB -DHAVE_ENCODER_DELTA -DHAVE_ENCODER_IA64 -DHAVE_ENCODER_LZMA1 -DHAVE_ENCODER_LZMA2 -DHAVE_ENCODER_POWERPC -DHAVE_ENCODER_SPARC -DHAVE_ENCODER_X86 -DHAVE_FUTIMENS -DHAVE_INTTYPES_H -DHAVE_MBRTOWC -DHAVE_MF_BT2 -DHAVE_MF_BT3 -DHAVE_MF_BT4 -DHAVE_MF_HC3 -DHAVE_MF_HC4 -DHAVE_POSIX_FADVISE -DHAVE_PTHREAD_CONDATTR_SETCLOCK -DHAVE_STDBOOL_H -DHAVE_STDINT_H -DHAVE_STRUCT_STAT_ST_ATIM_TV_NSEC -DHAVE_WCWIDTH -DHAVE__BOOL -DHAVE___BUILTIN_ASSUME_ALIGNED -DHAVE___BUILTIN_BSWAPXX -DMYTHREAD_POSIX -DNDEBUG -DPACKAGE_BUGREPORT="no" -DPACKAGE_NAME="XZ" -DPACKAGE_URL="no" -DTUKLIB_FAST_UNALIGNED_ACCESS -DASSUME_RAM=128 -D_GNU_SOURCE -Wall -Wextra -pthread' + +# INCLUDES='-Isrc/liblzma/api -Isrc/liblzma/common -Isrc/liblzma/check -Isrc/liblzma/lz -Isrc/liblzma/rangecoder -Isrc/liblzma/lzma -Isrc/liblzma/delta -Isrc/liblzma/simple -Isrc/common' + +# # Move some unbuilt files out of the way +# mv src/liblzma/check/crc32_small.c src/liblzma/check/crc32_small.c.exclude +# mv src/liblzma/check/crc64_small.c src/liblzma/check/crc64_small.c.exclude +# mv src/liblzma/check/crc32_tablegen.c src/liblzma/check/crc32_tablegen.c.exclude +# mv src/liblzma/check/crc64_tablegen.c src/liblzma/check/crc64_tablegen.c.exclude +# mv src/liblzma/rangecoder/price_tablegen.c src/liblzma/rangecoder/price_tablegen.c.exclude + +# # Build liblzma.so.5.3.1 +# clang -fPIC -Wl,--version-script=$PWD/src/liblzma/liblzma.map -shared -Wl,-soname,liblzma.so.5 -o liblzma.so.5.3.1 $CFLAGS src/common/*.c src/liblzma/*/*.c $INCLUDES + +# # Restore the unbuilt files +# mv src/liblzma/check/crc32_small.c.exclude src/liblzma/check/crc32_small.c +# mv src/liblzma/check/crc64_small.c.exclude src/liblzma/check/crc64_small.c +# mv src/liblzma/check/crc32_tablegen.c.exclude src/liblzma/check/crc32_tablegen.c +# mv src/liblzma/check/crc64_tablegen.c.exclude src/liblzma/check/crc64_tablegen.c +# mv src/liblzma/rangecoder/price_tablegen.c.exclude src/liblzma/rangecoder/price_tablegen.c + +# # Link to liblzma.so +# rm -f liblzma.so +# ln liblzma.so.5.3.1 liblzma.so + +# INCLUDES='-Isrc/common -Isrc/liblzma/api' + +# # Build xzdec +# clang $CFLAGS -o xzdec src/common/*.c src/xzdec/*.c $INCLUDES -L. -llzma + +# # Build xz +# clang $CFLAGS -o xz src/common/*.c src/xz/*.c $INCLUDES -L. -llzma + +CFLAGS='-DHAVE_CHECK_CRC32 -DHAVE_CHECK_CRC64 -DHAVE_CHECK_SHA256 -DHAVE_DECL_PROGRAM_INVOCATION_NAME -DHAVE_DECODERS -DHAVE_DECODER_ARM -DHAVE_DECODER_ARMTHUMB -DHAVE_DECODER_DELTA -DHAVE_DECODER_IA64 -DHAVE_DECODER_LZMA1 -DHAVE_DECODER_LZMA2 -DHAVE_DECODER_POWERPC -DHAVE_DECODER_SPARC -DHAVE_DECODER_X86 -DHAVE_ENCODERS -DHAVE_ENCODER_ARM -DHAVE_ENCODER_ARMTHUMB -DHAVE_ENCODER_DELTA -DHAVE_ENCODER_IA64 -DHAVE_ENCODER_LZMA1 -DHAVE_ENCODER_LZMA2 -DHAVE_ENCODER_POWERPC -DHAVE_ENCODER_SPARC -DHAVE_ENCODER_X86 -DHAVE_FUTIMENS -DHAVE_INTTYPES_H -DHAVE_MBRTOWC -DHAVE_MF_BT2 -DHAVE_MF_BT3 -DHAVE_MF_BT4 -DHAVE_MF_HC3 -DHAVE_MF_HC4 -DHAVE_POSIX_FADVISE -DHAVE_PTHREAD_CONDATTR_SETCLOCK -DHAVE_STDBOOL_H -DHAVE_STDINT_H -DHAVE_STRUCT_STAT_ST_ATIM_TV_NSEC -DHAVE_WCWIDTH -DHAVE__BOOL -DHAVE___BUILTIN_ASSUME_ALIGNED -DHAVE___BUILTIN_BSWAPXX -DMYTHREAD_POSIX -DNDEBUG -DPACKAGE_BUGREPORT="no" -DPACKAGE_NAME="XZ" -DPACKAGE_URL="no" -DTUKLIB_FAST_UNALIGNED_ACCESS -DASSUME_RAM=128 -D_GNU_SOURCE -Wall -Wextra -pthread' + +INCLUDES='-Isrc/liblzma/api -Isrc/liblzma/common -Isrc/liblzma/check -Isrc/liblzma/lz -Isrc/liblzma/rangecoder -Isrc/liblzma/lzma -Isrc/liblzma/delta -Isrc/liblzma/simple -Isrc/common' + +echo " +src/liblzma/check/crc32_small.c +src/liblzma/check/crc64_small.c +src/liblzma/check/crc32_tablegen.c +src/liblzma/check/crc64_tablegen.c +src/liblzma/rangecoder/price_tablegen.c +" | parallel 'mv {} {}.exclude' + +clang -fPIC -Wl,--version-script="$PWD/src/liblzma/liblzma.map" -shared \ + -Wl,-soname,liblzma.so.5 -o liblzma.so.5.3.1 \ + $CFLAGS src/common/*.c src/liblzma/*/*.c $INCLUDES + +echo " +src/liblzma/check/crc32_small.c +src/liblzma/check/crc64_small.c +src/liblzma/check/crc32_tablegen.c +src/liblzma/check/crc64_tablegen.c +src/liblzma/rangecoder/price_tablegen.c +" | parallel 'mv {}.exclude {}' + +rm -f liblzma.so +ln liblzma.so.5.3.1 liblzma.so + +parallel ::: \ + "clang $CFLAGS -o xzdec src/common/*.c src/xzdec/*.c $INCLUDES -L. -llzma" \ + "clang $CFLAGS -o xz src/common/*.c src/xz/*.c $INCLUDES -L. -llzma" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/cleanup.sh new file mode 100755 index 00000000..fd6c0c29 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/xz-clang" + +rm -rf "$input_dir/dev" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/deps.sh new file mode 100755 index 00000000..66c7f3a5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/deps.sh @@ -0,0 +1,4 @@ +#!/bin/bash + +sudo apt-get install -y git gcc clang + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/input.sh new file mode 100755 index 00000000..60fefabf --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/input.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/xz-clang" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/xz-mirror/xz "$input_dir/dev" +git -C "$input_dir/dev" checkout 2327a461e1afce862c22269b80d3517801103c1b + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/run.sh new file mode 100755 index 00000000..e93565fc --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/run.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/xz-clang/dev" && $BENCHMARK_SHELL "$scripts_dir/xz-clang/build.sh") + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/verify.sh new file mode 100755 index 00000000..a6c9837e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz-clang/verify.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +xz_bin="$input_dir/scripts/xz-clang/dev/xz" + +echo "Hello, Riker!" \ + | "$xz_bin" \ + | "$xz_bin" -d \ + | diff -q - <(echo Hello, Riker!) +echo riker/xz-clang $? diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz/build.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/build.sh new file mode 100755 index 00000000..35b80304 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/build.sh @@ -0,0 +1,65 @@ +#!/bin/sh + +# CFLAGS='-DHAVE_CHECK_CRC32 -DHAVE_CHECK_CRC64 -DHAVE_CHECK_SHA256 -DHAVE_DECL_PROGRAM_INVOCATION_NAME -DHAVE_DECODERS -DHAVE_DECODER_ARM -DHAVE_DECODER_ARMTHUMB -DHAVE_DECODER_DELTA -DHAVE_DECODER_IA64 -DHAVE_DECODER_LZMA1 -DHAVE_DECODER_LZMA2 -DHAVE_DECODER_POWERPC -DHAVE_DECODER_SPARC -DHAVE_DECODER_X86 -DHAVE_ENCODERS -DHAVE_ENCODER_ARM -DHAVE_ENCODER_ARMTHUMB -DHAVE_ENCODER_DELTA -DHAVE_ENCODER_IA64 -DHAVE_ENCODER_LZMA1 -DHAVE_ENCODER_LZMA2 -DHAVE_ENCODER_POWERPC -DHAVE_ENCODER_SPARC -DHAVE_ENCODER_X86 -DHAVE_FUTIMENS -DHAVE_INTTYPES_H -DHAVE_MBRTOWC -DHAVE_MF_BT2 -DHAVE_MF_BT3 -DHAVE_MF_BT4 -DHAVE_MF_HC3 -DHAVE_MF_HC4 -DHAVE_POSIX_FADVISE -DHAVE_PTHREAD_CONDATTR_SETCLOCK -DHAVE_STDBOOL_H -DHAVE_STDINT_H -DHAVE_STRUCT_STAT_ST_ATIM_TV_NSEC -DHAVE_WCWIDTH -DHAVE__BOOL -DHAVE___BUILTIN_ASSUME_ALIGNED -DHAVE___BUILTIN_BSWAPXX -DMYTHREAD_POSIX -DNDEBUG -DPACKAGE_BUGREPORT="no" -DPACKAGE_NAME="XZ" -DPACKAGE_URL="no" -DTUKLIB_FAST_UNALIGNED_ACCESS -DASSUME_RAM=128 -D_GNU_SOURCE -Wall -Wextra -pthread' + +# INCLUDES='-Isrc/liblzma/api -Isrc/liblzma/common -Isrc/liblzma/check -Isrc/liblzma/lz -Isrc/liblzma/rangecoder -Isrc/liblzma/lzma -Isrc/liblzma/delta -Isrc/liblzma/simple -Isrc/common' + +# # Move some unbuilt files out of the way +# mv src/liblzma/check/crc32_small.c src/liblzma/check/crc32_small.c.exclude +# mv src/liblzma/check/crc64_small.c src/liblzma/check/crc64_small.c.exclude +# mv src/liblzma/check/crc32_tablegen.c src/liblzma/check/crc32_tablegen.c.exclude +# mv src/liblzma/check/crc64_tablegen.c src/liblzma/check/crc64_tablegen.c.exclude +# mv src/liblzma/rangecoder/price_tablegen.c src/liblzma/rangecoder/price_tablegen.c.exclude + +# # Build liblzma.so.5.3.1 +# gcc -fPIC -Wl,--version-script=$PWD/src/liblzma/liblzma.map -shared -Wl,-soname,liblzma.so.5 -o liblzma.so.5.3.1 $CFLAGS src/common/*.c src/liblzma/*/*.c $INCLUDES + +# # Restore the unbuilt files +# mv src/liblzma/check/crc32_small.c.exclude src/liblzma/check/crc32_small.c +# mv src/liblzma/check/crc64_small.c.exclude src/liblzma/check/crc64_small.c +# mv src/liblzma/check/crc32_tablegen.c.exclude src/liblzma/check/crc32_tablegen.c +# mv src/liblzma/check/crc64_tablegen.c.exclude src/liblzma/check/crc64_tablegen.c +# mv src/liblzma/rangecoder/price_tablegen.c.exclude src/liblzma/rangecoder/price_tablegen.c + +# # Link to liblzma.so +# rm -f liblzma.so +# ln liblzma.so.5.3.1 liblzma.so + +# INCLUDES='-Isrc/common -Isrc/liblzma/api' + +# # Build xzdec +# gcc $CFLAGS -o xzdec src/common/*.c src/xzdec/*.c $INCLUDES -L. -llzma + +# # Build xz +# gcc $CFLAGS -o xz src/common/*.c src/xz/*.c $INCLUDES -L. -llzma + +CFLAGS='-DHAVE_CHECK_CRC32 -DHAVE_CHECK_CRC64 -DHAVE_CHECK_SHA256 -DHAVE_DECL_PROGRAM_INVOCATION_NAME -DHAVE_DECODERS -DHAVE_DECODER_ARM -DHAVE_DECODER_ARMTHUMB -DHAVE_DECODER_DELTA -DHAVE_DECODER_IA64 -DHAVE_DECODER_LZMA1 -DHAVE_DECODER_LZMA2 -DHAVE_DECODER_POWERPC -DHAVE_DECODER_SPARC -DHAVE_DECODER_X86 -DHAVE_ENCODERS -DHAVE_ENCODER_ARM -DHAVE_ENCODER_ARMTHUMB -DHAVE_ENCODER_DELTA -DHAVE_ENCODER_IA64 -DHAVE_ENCODER_LZMA1 -DHAVE_ENCODER_LZMA2 -DHAVE_ENCODER_POWERPC -DHAVE_ENCODER_SPARC -DHAVE_ENCODER_X86 -DHAVE_FUTIMENS -DHAVE_INTTYPES_H -DHAVE_MBRTOWC -DHAVE_MF_BT2 -DHAVE_MF_BT3 -DHAVE_MF_BT4 -DHAVE_MF_HC3 -DHAVE_MF_HC4 -DHAVE_POSIX_FADVISE -DHAVE_PTHREAD_CONDATTR_SETCLOCK -DHAVE_STDBOOL_H -DHAVE_STDINT_H -DHAVE_STRUCT_STAT_ST_ATIM_TV_NSEC -DHAVE_WCWIDTH -DHAVE__BOOL -DHAVE___BUILTIN_ASSUME_ALIGNED -DHAVE___BUILTIN_BSWAPXX -DMYTHREAD_POSIX -DNDEBUG -DPACKAGE_BUGREPORT="no" -DPACKAGE_NAME="XZ" -DPACKAGE_URL="no" -DTUKLIB_FAST_UNALIGNED_ACCESS -DASSUME_RAM=128 -D_GNU_SOURCE -Wall -Wextra -pthread' + +INCLUDES='-Isrc/liblzma/api -Isrc/liblzma/common -Isrc/liblzma/check -Isrc/liblzma/lz -Isrc/liblzma/rangecoder -Isrc/liblzma/lzma -Isrc/liblzma/delta -Isrc/liblzma/simple -Isrc/common' + + +echo " +src/liblzma/check/crc32_small.c +src/liblzma/check/crc64_small.c +src/liblzma/check/crc32_tablegen.c +src/liblzma/check/crc64_tablegen.c +src/liblzma/rangecoder/price_tablegen.c +" | parallel 'mv {} {}.exclude' + +gcc -fPIC -Wl,--version-script="$PWD/src/liblzma/liblzma.map" -shared \ + -Wl,-soname,liblzma.so.5 -o liblzma.so.5.3.1 \ + $CFLAGS src/common/*.c src/liblzma/*/*.c $INCLUDES + +echo " +src/liblzma/check/crc32_small.c +src/liblzma/check/crc64_small.c +src/liblzma/check/crc32_tablegen.c +src/liblzma/check/crc64_tablegen.c +src/liblzma/rangecoder/price_tablegen.c +" | parallel 'mv {}.exclude {}' + +rm -f liblzma.so +ln liblzma.so.5.3.1 liblzma.so + +parallel ::: "gcc $CFLAGS -o xzdec src/common/*.c src/xzdec/*.c $INCLUDES -L. -llzma" \ + "gcc $CFLAGS -o xz src/common/*.c src/xz/*.c $INCLUDES -L. -llzma" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz/cleanup.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/cleanup.sh new file mode 100755 index 00000000..b3c9eac0 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/cleanup.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/xz" + +rm -rf "$input_dir/dev" diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz/deps.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/deps.sh new file mode 100755 index 00000000..e8ee757b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/deps.sh @@ -0,0 +1,4 @@ +#!/bin/bash + +sudo apt install -y gcc + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz/input.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/input.sh new file mode 100755 index 00000000..7dd99010 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/input.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts/xz" + +mkdir -p "$input_dir/dev" + +git clone https://github.com/xz-mirror/xz "$input_dir/dev" +git -C "$input_dir/dev" checkout 2327a461e1afce862c22269b80d3517801103c1b + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz/run.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/run.sh new file mode 100755 index 00000000..0bda7fb2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/run.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +input_dir="${eval_dir}/input/scripts" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +(cd "$input_dir/xz/dev" && $BENCHMARK_SHELL "$scripts_dir/xz/build.sh") + + diff --git a/infrastructure/systems/GNU-Parallel/riker/scripts/xz/verify.sh b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/verify.sh new file mode 100755 index 00000000..132b870c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/scripts/xz/verify.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" +input_dir="${eval_dir}/input" + +xz_bin="$input_dir/scripts/xz/dev/xz" + +echo "Hello, Riker!" \ + | "$xz_bin" \ + | "$xz_bin" -d \ + | diff -q - <(echo Hello, Riker!) +echo riker/xz $? diff --git a/infrastructure/systems/GNU-Parallel/riker/verify.sh b/infrastructure/systems/GNU-Parallel/riker/verify.sh new file mode 100755 index 00000000..d6ed3d5d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/riker/verify.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP="$(git rev-parse --show-toplevel)" +eval_dir="${REPO_TOP}/riker" +scripts_dir="${eval_dir}/scripts" + +for bench in "$scripts_dir"/*; do + "$bench/verify.sh" $@ +done + diff --git a/infrastructure/systems/GNU-Parallel/sklearn/README.md b/infrastructure/systems/GNU-Parallel/sklearn/README.md new file mode 100644 index 00000000..2507c0ad --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/README.md @@ -0,0 +1,14 @@ +# sklearn benchmark +This benchmark runs a series of scripts that trains a model from sklearn (Scikit-Learn). I got the series of scripts via decomposing the sklearn source code by hand. + +## Purpose +I think this benchmark shows two things for a system like hS - viability in AI workflows and correctness. The first is quite self explanatory. If hS can run this benchmark, then it has proven that hS can handle the task of gluing together a nontrivial ML training workflow. +The second is correctness. There is a very clear ground truth (the model trained by pure sklearn) to compare hS's output to. Assuming the random seeds are set to the same value across the board, hS's model should produce the *exactly* the same weights as the ground truth. + +## Usage +Running fit.sh will generate temporary files in a ./tmp folder + +To parallelize, we want one-vs-rest classification, where we generate multiple models. +Additionally, the forest cover dataset has much more samples than it has features. +This makes the Newton-Cholesky solver ideal for this task. + diff --git a/infrastructure/systems/GNU-Parallel/sklearn/cleanup.sh b/infrastructure/systems/GNU-Parallel/sklearn/cleanup.sh new file mode 100755 index 00000000..70a59dfb --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/cleanup.sh @@ -0,0 +1,6 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +# rm -rf ./inputs +rm -rf ./result +rm -rf ./tmp diff --git a/infrastructure/systems/GNU-Parallel/sklearn/compare.ipynb b/infrastructure/systems/GNU-Parallel/sklearn/compare.ipynb new file mode 100644 index 00000000..3f7cff7d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/compare.ipynb @@ -0,0 +1,420 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 18, + "metadata": {}, + "outputs": [], + "source": [ + "from sklearn.model_selection import train_test_split\n", + "from sklearn import datasets\n", + "from sklearn.linear_model import LogisticRegression\n", + "import pickle\n", + "import subprocess\n", + "\n", + "destination = 'result/trained_model.obj'\n", + "data_source = 'cover'\n", + "\n", + "max_iter = 100\n", + "\n", + "if data_source == 'cover':\n", + " dataset = datasets.fetch_covtype(data_home=\"inputs\", download_if_missing=False)\n", + "elif data_source == 'digit':\n", + " dataset = datasets.load_digits()\n", + "else:\n", + " raise ValueError('data must be cover or digit')\n", + "\n", + "X_train, X_test, y_train, y_test = train_test_split(dataset.data, dataset.target, \n", + " test_size=0.2, \n", + " random_state=0)" + ] + }, + { + "cell_type": "code", + "execution_count": 19, + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/castlehoney/repos/research/pash-benchmarks/sklearn/.venv/lib/python3.10/site-packages/sklearn/linear_model/_logistic.py:1256: FutureWarning: 'multi_class' was deprecated in version 1.5 and will be removed in 1.7. Use OneVsRestClassifier(LogisticRegression(..)) instead. Leave it to its default value to avoid this warning.\n", + " warnings.warn(\n" + ] + } + ], + "source": [ + "control_model = LogisticRegression(max_iter=max_iter, \n", + " solver='newton-cholesky', \n", + " multi_class='ovr')\n", + "control_model.fit(X_train, y_train)\n", + "control_score = control_model.score(X_test, y_test)" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[14:21:14.349757] Destination: result/trained_model.obj\n", + "[14:22:00.992771] Step 1 end\n", + "[14:22:03.781715] Step 2 end\n", + "[14:22:04.350279] rownorm\n", + "[14:22:04.865963] reshape\n", + "[14:22:05.351335] warm_start\n", + "[14:22:23.883259] fold_coef\n", + "[14:22:24.407646] zip_coef\n", + "[14:22:24.949778] adjust_coef\n", + "[14:22:24.949845] Step 3 end\n" + ] + } + ], + "source": [ + "subprocess.run([f\"sh fit.sh {destination} {data_source} {max_iter} | ts '[%H:%M:%.S]'\"], shell=True)\n", + "with open(destination, 'rb') as file:\n", + " exp_model = pickle.load(file)\n", + "exp_score = exp_model.score(X_test, y_test)" + ] + }, + { + "cell_type": "code", + "execution_count": 22, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "control score: 0.7154290336738294\n", + "experiment score: 0.7154290336738294\n" + ] + } + ], + "source": [ + "print(f'control score: {control_score}')\n", + "print(f'experiment score: {exp_score}')" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "array([[ 7.04194724e-03, -3.59510609e-04, -7.24769412e-03,\n", + " -1.41005673e-03, -1.67743513e-03, -9.17672358e-05,\n", + " 1.05528713e-02, -3.47512988e-02, 1.63997259e-02,\n", + " -8.63761799e-06, 1.56816534e+00, 5.38470185e-01,\n", + " 9.39531231e-01, -3.04616676e+00, -5.90940510e-02,\n", + " -2.90877457e+00, -2.17510460e+00, -1.04048906e-01,\n", + " -4.13458787e-02, 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"pygments_lexer": "ipython3", + "version": "3.10.12" + }, + "orig_nbformat": 4, + "vscode": { + "interpreter": { + "hash": "481310881e105a97763b2849a6a8f554503a1fb1dc65dafbdc99d72c0c28d041" + } + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/infrastructure/systems/GNU-Parallel/sklearn/deps.sh b/infrastructure/systems/GNU-Parallel/sklearn/deps.sh new file mode 100755 index 00000000..e3ddb647 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/deps.sh @@ -0,0 +1,13 @@ +#!/bin/bash + +export PASH_SPEC_TOP=${PASH_SPEC_TOP:-$(git rev-parse --show-toplevel --show-superproject-working-tree)} + +benchmark_dir="sklearn" + +cd "$(realpath $(dirname "$0"))" +mkdir -p "$PASH_SPEC_TOP/report/resources/sklearn" +mkdir -p "$PASH_SPEC_TOP/report/output/sklearn" + +# Currently just dumped the entire dataset, but ideally we actually download it + +pip install -r requirements.txt diff --git a/infrastructure/systems/GNU-Parallel/sklearn/input.sh b/infrastructure/systems/GNU-Parallel/sklearn/input.sh new file mode 100755 index 00000000..b79d0a45 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/input.sh @@ -0,0 +1,8 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +mkdir -p tmp +mkdir -p result +mkdir -p inputs + +/usr/bin/env python3 -c "from sklearn.datasets import fetch_kddcup99; fetch_kddcup99(data_home=\"inputs\", percent10=False, download_if_missing=True)" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/inputs/covertype/samples_py3 b/infrastructure/systems/GNU-Parallel/sklearn/inputs/covertype/samples_py3 new file mode 100644 index 00000000..d3264d77 Binary files /dev/null and b/infrastructure/systems/GNU-Parallel/sklearn/inputs/covertype/samples_py3 differ diff --git a/infrastructure/systems/GNU-Parallel/sklearn/inputs/covertype/targets_py3 b/infrastructure/systems/GNU-Parallel/sklearn/inputs/covertype/targets_py3 new file mode 100644 index 00000000..cc386098 Binary files /dev/null and b/infrastructure/systems/GNU-Parallel/sklearn/inputs/covertype/targets_py3 differ diff --git a/infrastructure/systems/GNU-Parallel/sklearn/requirements.txt b/infrastructure/systems/GNU-Parallel/sklearn/requirements.txt new file mode 100644 index 00000000..8dd88923 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/requirements.txt @@ -0,0 +1,5 @@ +joblib==1.4.2 +numpy==1.26.4 +scikit-learn==1.5.0 +scipy==1.13.1 +threadpoolctl==3.5.0 diff --git a/infrastructure/systems/GNU-Parallel/sklearn/run b/infrastructure/systems/GNU-Parallel/sklearn/run new file mode 100755 index 00000000..0919650d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/run @@ -0,0 +1,92 @@ +#!/usr/bin/env python3 + +import argparse +from pathlib import Path +import os +import time +from subprocess import run, PIPE + +parser = argparse.ArgumentParser(description="Run benchmark") +parser = argparse.ArgumentParser(description="Run benchmark") +parser.add_argument('--window', default=5, type=int, help='window size to run hs with') +parser.add_argument('--target', choices=['hs-only', 'sh-only', 'both'], + help='to run with sh or hs') +parser.add_argument('--log', choices=['enable', 'disable'], default="enable", + help='whether to enable logging for hs') + +env = os.environ.copy() +SCRIPT_NAME = "run.sh" + + +def do_sh_run(test_base: Path, output_base: Path, env: dict): + before = time.time() + print(f'Running {test_base / SCRIPT_NAME}') + result = run(['/bin/sh', test_base / SCRIPT_NAME], stdout=PIPE, env=env) + duration = time.time() - before + with open(output_base / "sh_time", 'w') as f: + f.write(f'{duration}\n') + os.rename(env["OUTPUT_DIR"] / "trained_model.obj", env["OUTPUT_DIR"] / "sh_trained_model.obj") + return result.returncode, result.stdout + +def do_hs_run(test_base: Path, output_base: Path, hs_base: Path, window: int, env: dict, log: bool): + cmd = [hs_base / 'pash-spec.sh', '--window', str(window)] + if log: + cmd.extend(['-d', '2']) + cmd.append(test_base / SCRIPT_NAME) + before = time.time() + print(f'Running {cmd}') + with open(output_base / 'hs_log', 'w') as log: + result = run(cmd, stdout=PIPE, stderr=log, env=env) + duration = time.time() - before + with open(output_base / "hs_time", 'w') as f: + f.write(f'{duration}\n') + os.rename(env["OUTPUT_DIR"] / "trained_model.obj", env["OUTPUT_DIR"] / "hs_trained_model.obj") + return result.returncode, result.stdout + +if __name__ == '__main__': + args = parser.parse_args() + test_base = Path(__file__).parent.resolve() + hs_base = test_base.parent.parent.parent + + ####################### + # SPECIFY ENV VARS HERE + + env['TMP'] = hs_base / 'report' / 'resources' / 'sklearn' + env['RESULT'] = hs_base / 'report' / 'output' / 'sklearn' + env['OUTPUT_DIR'] = hs_base / 'report' / 'output' / 'sklearn' + + ####################### + + bench_base = test_base.parent + local_name = os.sep.join(test_base.parts[-1:]) + print(local_name) + output_base = hs_base / "report" / "output" / 'sklearn' / local_name + run_hs = False + run_sh = False + if args.target in ["hs-only", "both"]: + run_hs = True + if args.target in ["sh-only", "both"]: + run_sh = True + if not run_hs and not run_sh: + raise("Not running anything, add --target argument") + output_base.mkdir(parents=True, exist_ok=True) + + + if run_sh: + output_sh = do_sh_run(test_base, output_base, env) + if run_hs: + output_hs = do_hs_run(test_base, output_base, hs_base, args.window, env, args.log == 'enable') + if run_sh and run_hs: + with open(output_base / 'error', 'w') as errf: + print(output_sh[:100]) + if output_sh == output_hs: + errf.write('') + else: + errf.write('error\n') + errf.write(f'return code {output_sh[0]} vs {output_hs[0]}\n') + errf.write(f'==== output sh ====\n') + errf.write(output_sh[1].decode('UTF-8')) + errf.write(f'==== output hs ====\n') + errf.write(output_hs[1].decode('UTF-8')) + + diff --git a/infrastructure/systems/GNU-Parallel/sklearn/run.sh b/infrastructure/systems/GNU-Parallel/sklearn/run.sh new file mode 100644 index 00000000..6758bdfc --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/run.sh @@ -0,0 +1,10 @@ +#!/bin/bash + +REPO_TOP=$(git rev-parse --show-toplevel) +eval_dir="${REPO_TOP}/sklearn" +scripts_dir="${eval_dir}/scripts" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +cd "$eval_dir" # scripts/run.sh references PWD +$BENCHMARK_SHELL "$scripts_dir/run.sh" $@ + diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/adjust_coef.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/adjust_coef.py new file mode 100755 index 00000000..48a0200b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/adjust_coef.py @@ -0,0 +1,37 @@ +import sys +import pickle +import numpy as np +import os + +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, 'fold_coef.obj') +with open(filepath, 'rb') as file: + fold_coefs_ = pickle.load(file) + +model_file, X_file, multi_class, n_classes, destination = sys.argv[1:6] + +n_classes = int(n_classes) + +with open(X_file, 'rb') as file: + X = pickle.load(file) + n_features = X.shape[1] + +with open(model_file, 'rb') as file: + model = pickle.load(file) + if multi_class == "multinomial": + model.coef_ = fold_coefs_[0][0] + else: + model.coef_ = np.asarray(fold_coefs_) + model.coef_ = model.coef_.reshape( + n_classes, n_features + int(model.fit_intercept) + ) + + if model.fit_intercept: + model.intercept_ = model.coef_[:, -1] + model.coef_ = model.coef_[:, :-1] + else: + model.intercept_ = np.zeros(n_classes) + +filepath = os.path.join(tmp, 'trained_model.obj') +with open(filepath, 'wb') as file: + pickle.dump(model, file) \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/check_multiclass.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/check_multiclass.py new file mode 100755 index 00000000..21b0d902 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/check_multiclass.py @@ -0,0 +1,9 @@ +from sklearn.linear_model import _logistic +import sys +import pickle + +with open(sys.argv[1], 'rb') as file: + model = pickle.load(file) + +multi_class = _logistic._check_multi_class(model.multi_class, model.solver, len(model.classes_)) +print(multi_class) \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/check_solver.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/check_solver.py new file mode 100755 index 00000000..7ec6c1f5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/check_solver.py @@ -0,0 +1,11 @@ +from sklearn.linear_model import _logistic +import sys +import pickle + +with open(sys.argv[1], 'rb') as file: + model = pickle.load(file) + try: + _logistic._check_solver(model.solver, model.penalty, model.dual) + exit(0) + except ValueError: + exit(1) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/classes.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/classes.py new file mode 100755 index 00000000..e3d4e647 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/classes.py @@ -0,0 +1,20 @@ +from sklearn.linear_model import _logistic +import sys +import numpy as np +import pickle + +model_file, y_file = sys.argv[1:] + +with open(y_file, 'rb') as file: + y = pickle.load(file) + +try: + # Can probably optimize, only opening the file once + _logistic.check_classification_targets(y) + with open(model_file, 'rb') as file: + model = pickle.load(file) + model.classes_ = np.unique(y) + with open(model_file, 'wb') as file: + pickle.dump(model, file) +except: + exit(1) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/fold_coef.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/fold_coef.py new file mode 100755 index 00000000..563827ee --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/fold_coef.py @@ -0,0 +1,68 @@ +from sklearn.linear_model import _logistic +import pickle +import sys +import os + +file_args = [] +for file_name in sys.argv[1:8]: + with open(file_name, 'rb') as file: + file_args.append(pickle.load(file)) +[model, X, y, C_, classes, warm_start_coef, max_squared_sum] = file_args + +multi_class = sys.argv[8] +penalty = sys.argv[9] + +path_func = _logistic.delayed(_logistic._logistic_regression_path) + +# The SAG solver releases the GIL so it's more efficient to use +# threads for this solver. +if model.solver in ["sag", "saga"]: + prefer = "threads" +else: + prefer = "processes" + +# TODO: Refactor this to avoid joblib parallelism entirely when doing binary +# and multinomial multiclass classification and use joblib only for the +# one-vs-rest multiclass case. +if ( + model.solver in ["lbfgs", "newton-cg", "newton-cholesky"] + and len(classes) == 1 + and _logistic.effective_n_jobs(model.n_jobs) == 1 +): + # In the future, we would like n_threads = _openmp_effective_n_threads() + # For the time being, we just do + n_threads = 1 +else: + n_threads = 1 + +print(classes) + +fold_coefs_ = _logistic.Parallel(n_jobs=model.n_jobs, verbose=model.verbose, prefer=prefer)( + path_func( + X, + y, + pos_class=class_, + Cs=[C_], + l1_ratio=model.l1_ratio, + fit_intercept=model.fit_intercept, + tol=model.tol, + verbose=model.verbose, + solver=model.solver, + multi_class=multi_class, + max_iter=model.max_iter, + class_weight=model.class_weight, + check_input=False, + random_state=model.random_state, + coef=warm_start_coef_, + penalty=penalty, + max_squared_sum=max_squared_sum, + sample_weight=None, # Keep it as None for now. + # For some reason, the n_threads breaks the whole process + # n_threads=n_threads, + ) + for class_, warm_start_coef_ in zip(classes, warm_start_coef) +) +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, 'fold_coef.obj') +with open(filepath, 'w+b') as file: + pickle.dump(fold_coefs_, file) \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/gen_model.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/gen_model.py new file mode 100755 index 00000000..c9f10c8a --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/gen_model.py @@ -0,0 +1,13 @@ +from sklearn.linear_model import LogisticRegression +import pickle +import sys +import os + +reg = LogisticRegression(max_iter=int(sys.argv[1]), + solver='newton-cholesky', + multi_class='ovr') + +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, 'model.obj') +with open(filepath, 'w+b') as file: + pickle.dump(reg, file) \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/gen_samples.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/gen_samples.py new file mode 100755 index 00000000..31a66a6f --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/gen_samples.py @@ -0,0 +1,19 @@ +from sklearn.model_selection import train_test_split +from sklearn import datasets +import pickle +import os + + +raw_data = datasets.fetch_covtype(data_home="inputs", download_if_missing=False) + +data = train_test_split(raw_data.data, + raw_data.target, + test_size=0.2, + random_state=0) +filenames = ['X_train', 'X_test', 'y_train', 'y_test'] +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, 'model.obj') +for datum, name in zip(data, filenames): + filepath = os.path.join(tmp, f'{name}.obj') + with open(filepath, 'w+b') as file: + pickle.dump(datum, file) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/parallel.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/parallel.py new file mode 100755 index 00000000..65fb50a4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/parallel.py @@ -0,0 +1,40 @@ +from sklearn.linear_model import _logistic +import pickle +import sys +import os + +file_args = [] +for file_name in sys.argv[1:7]: + with open(file_name, 'rb') as file: + file_args.append(pickle.load(file)) +model, X, y, C_, warm_start_coef_, max_squared_sum = file_args + +multi_class = sys.argv[7] +penalty = sys.argv[8] +class_ = int(sys.argv[9]) + +result = _logistic._logistic_regression_path( + X, + y, + pos_class=class_, + Cs=[C_], + l1_ratio=model.l1_ratio, + fit_intercept=model.fit_intercept, + tol=model.tol, + verbose=model.verbose, + solver=model.solver, + multi_class=multi_class, + max_iter=model.max_iter, + class_weight=model.class_weight, + check_input=False, + random_state=model.random_state, + coef=None, #Leave as None for now, consider changing to warm_start_coef_ later + penalty=penalty, + max_squared_sum=max_squared_sum, + sample_weight=None, +) + +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, f'result_{class_}.obj') +with open(filepath, 'w+b') as file: + pickle.dump(result, file) \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/penalty.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/penalty.py new file mode 100755 index 00000000..52ae7bbe --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/penalty.py @@ -0,0 +1,41 @@ +import warnings +import sys +import pickle +import numpy as np +import os + +with open(sys.argv[1], 'rb') as file: + model = pickle.load(file) + +if model.penalty != "elasticnet" and model.l1_ratio is not None: + warnings.warn( + "l1_ratio parameter is only used when penalty is " + "'elasticnet'. Got " + "(penalty={})".format(model.penalty) + ) + +# TODO(1.4): Remove "none" option +if model.penalty == "none": + warnings.warn( + "`penalty='none'`has been deprecated in 1.2 and will be removed in 1.4." + " To keep the past behaviour, set `penalty=None`.", + FutureWarning, + ) + +if model.penalty is None or model.penalty == "none": + if model.C != 1.0: # default values + warnings.warn( + "Setting penalty=None will ignore the C and l1_ratio parameters" + ) + # Note that check for l1_ratio is done right above + C_ = np.inf + penalty = "l2" +else: + C_ = model.C + penalty = model.penalty + +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, 'C_.obj') +with open(filepath, 'w+b') as file: + pickle.dump(C_, file) +print(penalty) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/reshape_classes.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/reshape_classes.py new file mode 100755 index 00000000..6b26cb77 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/reshape_classes.py @@ -0,0 +1,24 @@ +import sys +import pickle + +with open(sys.argv[1], 'rb') as file: + model = pickle.load(file) + +n_classes = len(model.classes_) +classes = model.classes_ +if n_classes < 2: + raise ValueError( + "This solver needs samples of at least 2 classes" + " in the data, but the data contains only one" + " class: %r" + % classes[0] + ) + # Maybe have exit here? +if len(classes) == 2: + n_classes = 1 + classes = classes[1:] + +with open(sys.argv[2], 'w+b') as file: + pickle.dump(classes, file) +print(n_classes) + \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/rownorm.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/rownorm.py new file mode 100755 index 00000000..5fd6f254 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/rownorm.py @@ -0,0 +1,14 @@ +from sklearn.linear_model import _logistic +import sys +import pickle +import os + +with open(sys.argv[1], 'rb') as file: + X = pickle.load(file) + +max_squared_sum = _logistic.row_norms(X, squared=True).max() + +tmp = os.environ.get('TMP') +filepath = os.path.join(tmp, 'max_squared_sum.obj') +with open(filepath, 'w+b') as file: + pickle.dump(max_squared_sum, file) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/run.sh b/infrastructure/systems/GNU-Parallel/sklearn/scripts/run.sh new file mode 100755 index 00000000..ded71b5a --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/run.sh @@ -0,0 +1,137 @@ +#!/bin/bash + +# PYTHON="python3" +# OUT=${OUT:-$PWD/result} +# TMP=${TMP:-$PWD/tmp} +# #export tmp to env +# export TMP +# SCRIPTS=${SCRIPTS:-$PWD/scripts} + +# # Ideally, we'll move on to piping rather than writing to a file +# MODEL=$TMP/model.obj +# X=$TMP/X_train.obj +# y=$TMP/y_train.obj +# CLASSES=$TMP/classes.obj +# DUAL=false # should be converted to bool inside script +# MAX_SQ_SUM=$TMP/max_squared_sum.obj +# WARM_COEF=$TMP/warm_start_coef.obj +# C_=$TMP/C_.obj + +# echo $PYTHON >&2 +# echo "DIR: $DIR" >&2 +# echo "SCRIPTS: $SCRIPTS" >&2 +# echo "MODEL: $MODEL" >&2 +# echo "X: $X" >&2 +# echo "y: $y" >&2 +# echo "CLASSES: $CLASSES" >&2 +# echo "DUAL: $DUAL" >&2 +# echo "MAX_SQ_SUM: $MAX_SQ_SUM" >&2 +# echo "WARM_COEF: $WARM_COEF" >&2 +# echo "C_: $C_" >&2 + +# # TODO: Try this out on a larger dataset +# # TODO: Benchmark each phase + +# # Generating model & samples +# $PYTHON $SCRIPTS/gen_model.py 100 +# $PYTHON $SCRIPTS/gen_samples.py + +# # Validity checking functions +# # These functions just check to make sure that the input is valid. +# # If not they will raise an error. Otherwise, they do not mutate the data. +# $PYTHON $SCRIPTS/check_solver.py $MODEL +# penalty=$($PYTHON $SCRIPTS/penalty.py $MODEL) +# $PYTHON $SCRIPTS/val_data.py $MODEL $X $y +# $PYTHON $SCRIPTS/classes.py $MODEL $y # This should return a classes with just the unique classes in y +# echo "$PYTHON $SCRIPTS/check_multiclass.py $MODEL" >&2 +# multiclass=$($PYTHON $SCRIPTS/check_multiclass.py $MODEL) +# echo "------" >&2 +# # TODO: Benchmark each step of the pipeline +# # Make a modified pipeline where each step writes its output to a file + +# # Calculations functions +# $PYTHON $SCRIPTS/rownorm.py $X +# n_classes=$($PYTHON $SCRIPTS/reshape_classes.py $MODEL $CLASSES) +# $PYTHON $SCRIPTS/warm_start.py $MODEL $multiclass $n_classes # pipes coefficients + +# # Covtype dataset has 7 classes +# echo "WARM_COEF: $WARM_COEF" >&2 +# echo "MAX_SQ_SUM: $MAX_SQ_SUM" >&2 + +# echo "multiclass: $multiclass" >&2 +# echo "penalty: $penalty" >&2 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 1 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 2 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 3 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 4 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 5 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 6 +# $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty 7 + +# $PYTHON $SCRIPTS/zip_coef.py $MODEL +# $PYTHON $SCRIPTS/adjust_coef.py $MODEL $X $multiclass $n_classes $RESULT/trained_model.obj + + +PYTHON="python3" +OUT=${OUT:-$PWD/result} +TMP=${TMP:-$PWD/tmp} +export TMP +SCRIPTS=${SCRIPTS:-$PWD/scripts} + +# Ideally, we'll move on to piping rather than writing to a file +MODEL=$TMP/model.obj +X=$TMP/X_train.obj +y=$TMP/y_train.obj +CLASSES=$TMP/classes.obj +DUAL=false # should be converted to bool inside script +MAX_SQ_SUM=$TMP/max_squared_sum.obj +WARM_COEF=$TMP/warm_start_coef.obj +C_=$TMP/C_.obj + +echo $PYTHON >&2 +echo "DIR: $DIR" >&2 +echo "SCRIPTS: $SCRIPTS" >&2 +echo "MODEL: $MODEL" >&2 +echo "X: $X" >&2 +echo "y: $y" >&2 +echo "CLASSES: $CLASSES" >&2 +echo "DUAL: $DUAL" >&2 +echo "MAX_SQ_SUM: $MAX_SQ_SUM" >&2 +echo "WARM_COEF: $WARM_COEF" >&2 +echo "C_: $C_" >&2 + +parallel ::: \ + "$PYTHON $SCRIPTS/gen_model.py 100" \ + "$PYTHON $SCRIPTS/gen_samples.py" + +# Define temporary file for penalty result +PENALTY_FILE="$TMP_DIR/penalty_result.txt" + +# Run independent tasks in parallel +parallel --jobs 4 ::: \ + "$PYTHON $SCRIPTS/check_solver.py $MODEL" \ + "$PYTHON $SCRIPTS/val_data.py $MODEL $X $y" \ + "$PYTHON $SCRIPTS/classes.py $MODEL $y" \ + "$PYTHON $SCRIPTS/penalty.py $MODEL > $PENALTY_FILE" +# Sequential tasks (cannot be parallelized) +penalty=$(cat "$PENALTY_FILE") +rm "$PENALTY_FILE" + +echo "$PYTHON $SCRIPTS/check_multiclass.py $MODEL" >&2 +multiclass=$($PYTHON $SCRIPTS/check_multiclass.py $MODEL) +echo "------" >&2 + + +$PYTHON $SCRIPTS/rownorm.py $X +n_classes=$($PYTHON $SCRIPTS/reshape_classes.py $MODEL $CLASSES) +$PYTHON $SCRIPTS/warm_start.py $MODEL $multiclass $n_classes + +echo "WARM_COEF: $WARM_COEF" >&2 +echo "MAX_SQ_SUM: $MAX_SQ_SUM" >&2 + +echo "multiclass: $multiclass" >&2 +echo "penalty: $penalty" >&2 +seq 1 7 | parallel --jobs "$(nproc)" $PYTHON $SCRIPTS/parallel.py $MODEL $X $y $C_ $WARM_COEF $MAX_SQ_SUM $multiclass $penalty {} + +$PYTHON $SCRIPTS/zip_coef.py $MODEL +$PYTHON $SCRIPTS/adjust_coef.py $MODEL $X $multiclass $n_classes $RESULT/trained_model.obj diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/val_data.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/val_data.py new file mode 100755 index 00000000..1e730a18 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/val_data.py @@ -0,0 +1,26 @@ +import sys +import numpy as np +import pickle + +with open(sys.argv[2], 'r+b') as X_file: + X = pickle.load(X_file) + with open(sys.argv[3], 'r+b') as y_file: + y = pickle.load(y_file) + with open(sys.argv[1], 'r+b') as model_file: + model = pickle.load(model_file) + try: + X, y = model._validate_data( + X, + y, + accept_sparse="csr", + dtype=np.float64 if model.solver == 'lbfgs' else [np.float64, np.float32], + order="C", + accept_large_sparse=model.solver not in ["liblinear", "sag", "saga"], + ) + + pickle.dump(X, X_file) + pickle.dump(y, y_file) + pickle.dump(model, model_file) + exit(0) + except ValueError: + exit(1) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/warm_start.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/warm_start.py new file mode 100755 index 00000000..14ae79ab --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/warm_start.py @@ -0,0 +1,30 @@ +import sys +import numpy as np +import pickle +import os + +with open(sys.argv[1], 'rb') as file: + model = pickle.load(file) +multi_class = sys.argv[2] +n_classes = int(sys.argv[3]) + +if model.warm_start: + warm_start_coef = getattr(model, "coef_", None) +else: + warm_start_coef = None +if warm_start_coef is not None and model.fit_intercept: + warm_start_coef = np.append( + warm_start_coef, model.intercept_[:, np.newaxis], axis=1 + ) +tmp = os.environ.get('TMP') +if multi_class == "multinomial": + filepath = os.path.join(tmp, 'classes.obj') + with open(filepath, 'wb') as file: + pickle.dump([None], file) + warm_start_coef = [warm_start_coef] +if warm_start_coef is None: + warm_start_coef = [None] * n_classes + +filepath = os.path.join(tmp, 'warm_start_coef.obj') +with open(filepath, 'w+b') as file: + pickle.dump(warm_start_coef, file) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/scripts/zip_coef.py b/infrastructure/systems/GNU-Parallel/sklearn/scripts/zip_coef.py new file mode 100755 index 00000000..8aece5f8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/scripts/zip_coef.py @@ -0,0 +1,25 @@ +import sys +import numpy as np +import pickle +import os + +fold_coefs_ = [] + +tmp = os.environ.get('TMP') + +with open(sys.argv[1], 'r+b') as file1: + model = pickle.load(file1) + + for i in range(1, 8): + filepath = os.path.join(tmp, f'result_{i}.obj') + with open(filepath, 'r+b') as file2: + fold_coefs_.append(pickle.load(file2)) + + fold_coefs_, _, n_iter_ = zip(*fold_coefs_) + + model.n_iter = np.asarray(n_iter_, dtype=np.int32)[:, 0] + pickle.dump(model, file1) + +filepath = os.path.join(tmp, 'fold_coef.obj') +with open(filepath, 'w+b') as file: + pickle.dump(fold_coefs_, file) diff --git a/infrastructure/systems/GNU-Parallel/sklearn/verify.py b/infrastructure/systems/GNU-Parallel/sklearn/verify.py new file mode 100755 index 00000000..6419bb57 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/verify.py @@ -0,0 +1,28 @@ +#!/usr/bin/env python + +from sklearn.model_selection import train_test_split +from sklearn import datasets +from sklearn.linear_model import LogisticRegression +import pickle +import numpy as np + +max_iter = 100 + +dataset = datasets.fetch_covtype(data_home="inputs", download_if_missing=False) + +X_train, X_test, y_train, y_test = train_test_split(dataset.data, dataset.target, + test_size=0.2, + random_state=0) + +control_model = LogisticRegression(max_iter=max_iter, + solver='newton-cholesky', + multi_class='ovr') +control_model.fit(X_train, y_train) +control_score = control_model.score(X_test, y_test) + +with open('tmp/trained_model.obj', 'rb') as file: + experiment_model = pickle.load(file) +experiment_score = experiment_model.score(X_test, y_test) + +assert experiment_score == control_score +assert np.array_equal(control_model.coef_, experiment_model.coef_) \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/sklearn/verify.sh b/infrastructure/systems/GNU-Parallel/sklearn/verify.sh new file mode 100755 index 00000000..f6301025 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/sklearn/verify.sh @@ -0,0 +1,13 @@ +#!/bin/bash + +# shell script to run verify.py + +# run the Python script +python3 verify.py + +# check if the script ran successfully +if [ $? -eq 0 ]; then + echo "verify.py ran successfully." +else + echo "verify.py encountered an error." +fi \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/.gitignore b/infrastructure/systems/GNU-Parallel/unix50/.gitignore new file mode 100644 index 00000000..f72f5fdc --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/.gitignore @@ -0,0 +1,2 @@ +inputs/ +outputs/ diff --git a/infrastructure/systems/GNU-Parallel/unix50/cleanup.sh b/infrastructure/systems/GNU-Parallel/unix50/cleanup.sh new file mode 100755 index 00000000..2e2e12f3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/cleanup.sh @@ -0,0 +1,5 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +rm -rf ./inputs +rm -rf ./outputs diff --git a/infrastructure/systems/GNU-Parallel/unix50/deps.sh b/infrastructure/systems/GNU-Parallel/unix50/deps.sh new file mode 100755 index 00000000..6d9c19ef --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/deps.sh @@ -0,0 +1 @@ +# This benchmark does not have any dependencies. diff --git a/infrastructure/systems/GNU-Parallel/unix50/hashes/small/1.hash b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/1.hash new file mode 100644 index 00000000..86862a39 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/1.hash @@ -0,0 +1 @@ +3251c9aa9eec9cf111d31f50e0dfecdbc1c143b2087179caafb77fb0eee6f580 diff --git a/infrastructure/systems/GNU-Parallel/unix50/hashes/small/10.hash b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/10.hash new file mode 100644 index 00000000..4c17d9de --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/10.hash @@ -0,0 +1 @@ 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b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/8.hash @@ -0,0 +1 @@ +dcd477cdc1a00d81e99863b865b1b9ac9176abab64df12fee14b795297ae3d38 diff --git a/infrastructure/systems/GNU-Parallel/unix50/hashes/small/9.hash b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/9.hash new file mode 100644 index 00000000..9b2f82e7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/hashes/small/9.hash @@ -0,0 +1 @@ +cc8c789eb8fa081de15df8d249e567bc5d51b68f1c6c94bf98c8c6fca31a48c9 diff --git a/infrastructure/systems/GNU-Parallel/unix50/input.sh b/infrastructure/systems/GNU-Parallel/unix50/input.sh new file mode 100755 index 00000000..5fe60d15 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/input.sh @@ -0,0 +1,37 @@ +#!/bin/bash + +cd "$(realpath $(dirname "$0"))" +mkdir -p inputs +cd inputs + +inputs=(1 2 3 4 5 6 7 8 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10 11 12) + +for input in ${inputs[@]} +do + + echo "Processing ${input}.txt" + + if [ ! -f "${input}.txt" ]; then + wget --no-check-certificate "http://atlas-group.cs.brown.edu/data/unix50/${input}.txt" -q || exit 1 + fi + + # TODO: Maybe upload 1M and 3G files to the server? + if [ ! -f "${input}_1M.txt" ]; then + file_content_size=$(wc -c < "${input}.txt") + iteration_limit=$((1048576 / $file_content_size)) + for (( i = 0; i < iteration_limit; i++ )); do + cat "${input}.txt" >> "${input}_1M.txt" + done + fi + + # Skip the 3G file if the --small flag is present + if [[ "$@" == *"--small"* ]]; then + continue + fi + + if [ ! -f "${input}_3G.txt" ]; then + for (( i = 0; i < 3000; i++ )); do + cat "${input}_1M.txt" >> "${input}_3G.txt" + done + fi +done diff --git a/infrastructure/systems/GNU-Parallel/unix50/run.sh b/infrastructure/systems/GNU-Parallel/unix50/run.sh new file mode 100755 index 00000000..26b23002 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/run.sh @@ -0,0 +1,73 @@ +#!/bin/bash + +export SUITE_DIR=$(realpath $(dirname "$0")) +export TIMEFORMAT=%R +cd $SUITE_DIR + +scripts_inputs=( +"1;1" +"2;1" +"3;1" +"4;1" +"5;2" +"6;3" +"7;4" +"8;4" +"9;4" +"10;4" +"11;4" +"12;4" +"13;5" +"14;6" +"15;7" +"16;7" +"17;7" +"18;8" +"19;8" +"20;8" +"21;8" +# "22;8" +"23;9.1" +"24;9.2" +"25;9.3" +"26;9.4" +# "27;9.5" +"28;9.6" +"29;9.7" +"30;9.8" +"31;9.9" +"32;10" +"33;10" +"34;10" +"35;11" +"36;11" +) + +suffix="" + +if [[ "$@" == *"--small"* ]]; then + suffix="_1M" +else + suffix="_3G" +fi + +echo executing unix50 $(date) + +mkdir -p "outputs" +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} + +for script_input in ${scripts_inputs[@]}; +do + IFS=";" read -r -a parsed <<< "${script_input}" + + script=${parsed[0]} + input=${parsed[1]} + + script_file="./scripts/$script.sh" + input_file="./inputs/$input$suffix.txt" + output_file="./outputs/$script.out" + + echo "$script" + $BENCHMARK_SHELL $script_file $input_file > $output_file + echo $? +done diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/1.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/1.sh new file mode 100755 index 00000000..369f1540 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/1.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 1.0: extract the last name +# cat $1 | cut -d ' ' -f 2 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -d ' ' -f 2" < "$1" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/10.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/10.sh new file mode 100755 index 00000000..693a1c1e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/10.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 4.4: histogram of Belle's captures (-pawns) by each type of piece +# cat $1 | tr ' ' '\n' | grep 'x' | grep '\.' | cut -d '.' -f 2 | grep '[KQRBN]' | cut -c 1-1 | sort | uniq -c | sort -nr + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep 'x' | grep '\.' | cut -d '.' -f 2 | grep '[KQRBN]' | cut -c 1-1" < "$1" | sort | uniq -c | sort -nr \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/11.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/11.sh new file mode 100755 index 00000000..e0600218 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/11.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 4.5: 4.4 + pawns +# cat $1 | tr ' ' '\n' | grep 'x' | grep '\.' | cut -d '.' -f 2 | cut -c 1-1 | tr '[a-z]' 'P' | sort | uniq -c | sort -nr + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep 'x' | grep '\.' | cut -d '.' -f 2 | cut -c 1-1 | tr '[a-z]' 'P'" < "$1" | sort | uniq -c | sort -nr \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/12.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/12.sh new file mode 100755 index 00000000..37f86fd3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/12.sh @@ -0,0 +1,8 @@ +#!/bin/bash + +# 4.6: piece used the most by Belle +# cat $1 | tr ' ' '\n' | grep '\.' | cut -d '.' -f 2 | cut -c 1-1 | tr '[a-z]' 'P' | sort -r | uniq | head -n 3 | tail -n 1 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep '\.' | cut -d '.' -f 2 | cut -c 1-1 | tr '[a-z]' 'P'" < "$1" | sort -r | uniq | head -n 3 | tail -n 1 + diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/13.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/13.sh new file mode 100755 index 00000000..e6f67de6 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/13.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 5.1: extract hello world +# cat $1 | grep 'print' | cut -d "\"" -f 2 | cut -c 1-12 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "grep 'print' | cut -d '\"' -f 2 | cut -c 1-12" < "$1" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/14.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/14.sh new file mode 100755 index 00000000..67a2f909 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/14.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 6.1: order the bodies by how easy it would be to land on them in Thompson's Space Travel game when playing at the highest simulation scale +# cat $1 | awk "{print \$2, \$0}" | sort -nr | cut -d ' ' -f 2 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "awk '{print \$2, \$0}' " < "$1" | sort -nr | cut -d ' ' -f 2 \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/15.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/15.sh new file mode 100755 index 00000000..e6b98aaf --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/15.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 7.1: identify number of AT&T unix versions +# cat $1 | cut -f 1 | grep 'AT&T' | wc -l + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -f 1 | grep 'AT&T'" < "$1" | wc -l \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/16.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/16.sh new file mode 100755 index 00000000..9e20da09 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/16.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 7.2: find most frequently occurring machine +# cat $1 | cut -f 2 | sort -n | uniq -c | sort -nr | head -n 1 | tr -s ' ' '\n' | tail -n 1 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -f 2" < "$1" | sort | uniq -c | sort -nr | head -n 1 | tr -s ' ' '\n' | tail -n 1 \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/17.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/17.sh new file mode 100755 index 00000000..12c73781 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/17.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 7.3: all the decades in which a unix version was released +# cat $1 | cut -f 4 | sort -n | cut -c 3-3 | uniq | sed s/\$/'0s'/ + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -f 4" < "$1" | sort -n | cut -c 3-3 | uniq | sed s/\$/'0s'/ \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/18.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/18.sh new file mode 100755 index 00000000..e41bf954 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/18.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 8.1: count unix birth-year +# cat $1 | tr ' ' '\n' | grep 1969 | wc -l + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep 1969" < "$1" | wc -l \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/19.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/19.sh new file mode 100755 index 00000000..a93f2da1 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/19.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 8.2: find Bell Labs location where Dennis Ritchie had his office +# cat $1 | grep 'Bell' | awk 'length <= 45' | cut -d ',' -f 2 | awk "{\$1=\$1};1" + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "grep 'Bell' | awk 'length <= 45' | cut -d ',' -f 2 | awk '{\$1=\$1};1'" < "$1" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/2.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/2.sh new file mode 100755 index 00000000..85e3254b --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/2.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 1.1: extract names and sort +# cat $1 | cut -d ' ' -f 2 | sort + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -d ' ' -f 2" < "$1" | sort \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/20.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/20.sh new file mode 100755 index 00000000..0054e1c6 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/20.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 8.3: find names of the four people most involved with unix +# cat $1 | grep '(' | cut -d '(' -f 2 | cut -d ')' -f 1 | head -n 1 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "grep '(' | cut -d '(' -f 2 | cut -d ')' -f 1" < "$1" | head -n 1 \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/21.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/21.sh new file mode 100755 index 00000000..65bedba3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/21.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 8.4: find longest words without hyphens +# cat $1 | tr -c "[a-z][A-Z]" '\n' | sort | awk "length >= 16" + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr -c '[a-z][A-Z]' '\n'" < "$1" | sort | awk 'length >= 16' diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/22.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/22.sh new file mode 100755 index 00000000..3a2cbcf2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/22.sh @@ -0,0 +1,4 @@ +#!/bin/bash + +# # 8.5: Find second-most-freq 8-character word(s) without hyphens +# cat $1 > /dev/null diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/23.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/23.sh new file mode 100755 index 00000000..f24f16a5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/23.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.1: extract the word PORT +# cat $1 | tr ' ' '\n' | grep '[A-Z]' | tr '[a-z]' '\n' | grep '[A-Z]' | tr -d '\n' | cut -c 1-4 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep '[A-Z]' | tr '[a-z]' '\n' | grep '[A-Z]'" < "$1" | tr -d '\n' | cut -c 1-4 \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/24.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/24.sh new file mode 100755 index 00000000..c0c9eb55 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/24.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.2: extract the word BELL +# cat $1 | cut -c 1-1 | tr -d '\n' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -c 1-1" < "$1" | tr -d '\n' \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/25.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/25.sh new file mode 100755 index 00000000..455ffcd5 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/25.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.3: animal that used to decorate the Unix room +# cat $1 | cut -c 1-2 | tr -d '\n' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -c 1-2" < "$1" | tr -d '\n' \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/26.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/26.sh new file mode 100755 index 00000000..34ddc597 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/26.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.4: four corners with E centered, for an "X" configuration +# cat $1 | tr ' ' '\n' | grep "\"" | sed 4d | cut -d "\"" -f 2 | tr -d '\n' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep '\"' | cut -d '\"' -f 2" < "$1" | sed 4d | tr -d '\n' diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/27.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/27.sh new file mode 100755 index 00000000..1b608949 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/27.sh @@ -0,0 +1,4 @@ +#!/bin/bash + +# # 9.5: backwards running clock, in a backwards poem +# cat $1 > /dev/null diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/28.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/28.sh new file mode 100755 index 00000000..b9bfc85d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/28.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.6: Follow the directions for grep +# cat $1 | tr ' ' '\n' | grep '[A-Z]' | sed 1d | sed 3d | sed 3d | tr '[a-z]' '\n' | grep '[A-Z]' | sed 3d | tr -c '[A-Z]' '\n' | tr -d '\n' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep '[A-Z]'" < "$1" | sed 1d | sed 3d | sed 3d | tr '[a-z]' '\n' | grep '[A-Z]' | sed 3d | tr -c '[A-Z]' '\n' | tr -d '\n' diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/29.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/29.sh new file mode 100755 index 00000000..e03346dc --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/29.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.7: Four corners +# cat $1 | sed 2d | sed 2d | tr -c '[A-Z]' '\n' | tr -d '\n' + +# Using GNU parallel: +cat $1 | sed 2d | sed 2d | parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr -c '[A-Z]' '\n'" | tr -d '\n' diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/3.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/3.sh new file mode 100755 index 00000000..06e0a68d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/3.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 1.2: extract names and sort +cat $1 | head -n 2 | cut -d ' ' -f 2 + +# we only edit the first two lines of the file +# so no reason to use GNU parallel --jobs "$jobs" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/30.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/30.sh new file mode 100755 index 00000000..7c692be3 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/30.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.8: TELE-communications +# cat $1 | tr -c '[a-z][A-Z]' '\n' | grep '[A-Z]' | sed 1d | sed 2d | sed 3d | sed 4d | tr -c '[A-Z]' '\n' | tr -d '\n' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr -c '[a-z][A-Z]' '\n' | grep '[A-Z]'" < "$1" | sed 1d | sed 2d | sed 3d | sed 4d | tr -c '[A-Z]' '\n' | tr -d '\n' \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/31.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/31.sh new file mode 100755 index 00000000..6d78479a --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/31.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 9.9: +# cat $1 | tr -c '[a-z][A-Z]' '\n' | grep '[A-Z]' | sed 1d | sed 1d | sed 2d | sed 3d | sed 5d | tr -c '[A-Z]' '\n' | tr -d '\n' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr -c '[a-z][A-Z]' '\n' | grep '[A-Z]'" < "$1" | sed 1d | sed 1d | sed 2d | sed 3d | sed 5d | tr -c '[A-Z]' '\n' | tr -d '\n' \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/32.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/32.sh new file mode 100755 index 00000000..c3e98b52 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/32.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 10.1: count Turing award recipients while working at Bell Labs +# cat $1 | sed 1d | grep 'Bell' | cut -f 2 | wc -l + +# Using GNU parallel: +cat $1 | sed 1d | parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k " grep 'Bell' | cut -f 2" | wc -l \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/33.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/33.sh new file mode 100755 index 00000000..6e55f996 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/33.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 10.2: list Turing award recipients while working at Bell Labs +# cat $1 | sed 1d | grep 'Bell' | cut -f 2 + +# Using GNU parallel: +cat $1 | sed 1d | parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "grep 'Bell' | cut -f 2" < "$1" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/34.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/34.sh new file mode 100755 index 00000000..9051c4a4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/34.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 10.3: extract Ritchie's username +# cat $1 | grep 'Bell' | cut -f 2 | head -n 1 | fmt -w1 | cut -c 1-1 | tr -d '\n' | tr '[A-Z]' '[a-z]' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "grep 'Bell' | cut -f 2" < "$1" | head -n 1 | fmt -w1 | cut -c 1-1 | tr -d '\n' | tr '[A-Z]' '[a-z]' \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/35.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/35.sh new file mode 100755 index 00000000..8a801036 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/35.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 11.1: year Ritchie and Thompson receive the Hamming medal +# cat $1 | grep 'UNIX' | cut -f 1 + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "grep 'UNIX' | cut -f 1" < "$1" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/36.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/36.sh new file mode 100755 index 00000000..da511854 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/36.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 11.2: most repeated first name in the list? +# cat $1 | cut -f 2 | cut -d ' ' -f 1 | sort | uniq -c | sort -nr | head -n 1 | fmt -w1 | sed 1d + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -f 2 | cut -d ' ' -f 1" < "$1" | sort | uniq -c | sort -nr | head -n 1 | fmt -w1 | sed 1d \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/4.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/4.sh new file mode 100755 index 00000000..e211e5d1 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/4.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 1.3: sort top first names +# cat $1 | cut -d ' ' -f 1 | sort | uniq -c | sort -r + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -d ' ' -f 1" < "$1" | sort | uniq -c | sort -r \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/5.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/5.sh new file mode 100755 index 00000000..0d7d3c75 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/5.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 2.1: get all Unix utilities +# cat $1 | cut -d ' ' -f 4 | tr -d ',' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -d ' ' -f 4 | tr -d ','" < "$1" \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/6.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/6.sh new file mode 100755 index 00000000..7689d0e7 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/6.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 3.1: get lowercase first letter of last names (awk) +# cat $1 | cut -d ' ' -f 2 | cut -c 1-1 | tr -d '\n' | tr '[A-Z]' '[a-z]' + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "cut -d ' ' -f 2 | cut -c 1-1" < "$1" | tr -d '\n' | tr '[A-Z]' '[a-z]' diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/7.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/7.sh new file mode 100755 index 00000000..06c915b2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/7.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 4.1: find number of rounds +# cat $1 | tr ' ' '\n' | grep '\.' | wc -l + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep '\.'" < "$1" | wc -l \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/8.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/8.sh new file mode 100755 index 00000000..4dafa4ed --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/8.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 4.2: find pieces captured by Belle +# cat $1 | tr ' ' '\n' | grep 'x' | grep '\.' | wc -l + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep 'x' | grep '\.'" < "$1" | wc -l \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/scripts/9.sh b/infrastructure/systems/GNU-Parallel/unix50/scripts/9.sh new file mode 100755 index 00000000..7496b0d9 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/scripts/9.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +# 4.3: find pieces captured by Belle with a pawn +# cat $1 | tr ' ' '\n' | grep 'x' | grep '\.' | cut -d '.' -f 2 | grep -v '[KQRBN]' | wc -l + +# Using GNU parallel: +parallel --jobs "$jobs" --pipe --block "$BLOCK_SIZE" -k "tr ' ' '\n' | grep 'x' | grep '\.' | cut -d '.' -f 2 | grep -v '[KQRBN]'" < "$1" | wc -l \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/unix50/verify.sh b/infrastructure/systems/GNU-Parallel/unix50/verify.sh new file mode 100755 index 00000000..0b515351 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/unix50/verify.sh @@ -0,0 +1,54 @@ +#!/bin/bash + +# Exit immediately if a command exits with a non-zero status +# set -e + +cd "$(realpath $(dirname "$0"))" + +mkdir -p hashes/small + +if [[ "$@" == *"--small"* ]]; then + hash_folder="hashes/small" +else + hash_folder="hashes" +fi + +if [[ "$@" == *"--generate"* ]]; then + # Directory to iterate over + directory="outputs" + + # Loop through all .out files in the directory + for file in "$directory"/*.out + do + # Extract the filename without the directory path and extension + filename=$(basename "$file" .out) + + # Generate SHA-256 hash + hash=$(shasum -a 256 "$file" | awk '{ print $1 }') + + # Save the hash to a file + echo "$hash" > "$hash_folder/$filename.hash" + + # Print the filename and hash + echo "$hash_folder/$filename.hash $hash" + done + + exit 0 +fi + +# Loop through all directories in the parent directory +for file in "outputs"/*.out +do + # Extract the filename without the directory path and extension + filename=$(basename "$file" .out) + + # Generate SHA-256 hash + shasum -a 256 "$file" | awk '{ print $1 }' > "$file.hash" + + # Compare the hash with the hash in the hashes directory + diff "$hash_folder/$filename.hash" "$file.hash" > /dev/null + match="$?" + + # Print the filename and hash + echo "outputs/$filename.out $match" +done diff --git a/infrastructure/systems/GNU-Parallel/web-index/.gitignore b/infrastructure/systems/GNU-Parallel/web-index/.gitignore new file mode 100644 index 00000000..58faa678 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/.gitignore @@ -0,0 +1,4 @@ +inputs +outputs + +node_modules diff --git a/infrastructure/systems/GNU-Parallel/web-index/cleanup.sh b/infrastructure/systems/GNU-Parallel/web-index/cleanup.sh new file mode 100755 index 00000000..55bd51ba --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/cleanup.sh @@ -0,0 +1 @@ +rm -r inputs outputs diff --git a/infrastructure/systems/GNU-Parallel/web-index/deps.sh b/infrastructure/systems/GNU-Parallel/web-index/deps.sh new file mode 100755 index 00000000..9d658b79 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/deps.sh @@ -0,0 +1,28 @@ +#!/usr/bin/env bash + +set -e +# 7zip +pkgs='p7zip-full curl wget nodejs unzip npm' +if ! dpkg -s $pkgs >/dev/null 2>&1 ; then + sudo apt-get install $pkgs -y + echo 'Packages Installed' +fi + +if ! dpkg -s pandoc > /dev/null 2>&1 ; then + # since pandoc v.2.2.1 does not support arm64, we use v.3.5 + wget https://github.com/jgm/pandoc/releases/download/3.5/pandoc-3.5-1-$(dpkg --print-architecture).deb + sudo dpkg -i ./pandoc-3.5-1-$(dpkg --print-architecture).deb + rm ./pandoc-3.5-1-$(dpkg --print-architecture).deb +fi + +if ! dpkg -s nodejs > /dev/null 2>&1 ; then + # node version 18+ does not need external npm + curl -fsSL https://deb.nodesource.com/setup_18.x | sudo -E bash - + sudo apt-get install -y nodejs +fi + +cd $(dirname $0)/scripts || exit 1 +npm install +# Install the npm packages +npm install natural +cd - diff --git a/infrastructure/systems/GNU-Parallel/web-index/hashes/1-grams.txt.small.hash b/infrastructure/systems/GNU-Parallel/web-index/hashes/1-grams.txt.small.hash new file mode 100644 index 00000000..f9fabdab --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/hashes/1-grams.txt.small.hash @@ -0,0 +1 @@ +a5c0042f76e0680586ae707dd62c9f3e diff --git a/infrastructure/systems/GNU-Parallel/web-index/hashes/2-grams.txt.small.hash b/infrastructure/systems/GNU-Parallel/web-index/hashes/2-grams.txt.small.hash new file mode 100644 index 00000000..cfab03e2 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/hashes/2-grams.txt.small.hash @@ -0,0 +1 @@ +db8e559c78464ffc3fdf5aeede7a3b8a diff --git a/infrastructure/systems/GNU-Parallel/web-index/hashes/3-grams.txt.small.hash b/infrastructure/systems/GNU-Parallel/web-index/hashes/3-grams.txt.small.hash new file mode 100644 index 00000000..dfda4f9e --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/hashes/3-grams.txt.small.hash @@ -0,0 +1 @@ +f1caa64726ed848a67a117a6d9879a51 diff --git a/infrastructure/systems/GNU-Parallel/web-index/input.sh b/infrastructure/systems/GNU-Parallel/web-index/input.sh new file mode 100755 index 00000000..a4220c19 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/input.sh @@ -0,0 +1,39 @@ +#!/bin/bash + +BENCH_TOP=${BENCH_TOP:-$(git rev-parse --show-toplevel)} +RESOURCES_DIR=${RESOURCES_DIR:-$BENCH_TOP/web-index}/inputs + +cp stopwords.txt $RESOURCES_DIR # TODO: Grab this from the atlas server + +mkdir -p $RESOURCES_DIR + +if [ "$1" = "--small" ]; then + if [[ ! -f "$RESOURCES_DIR/wikipedia-small.tar.gz" ]]; then + # 1000 entries + echo "Downloading the small dataset." + wget -O $RESOURCES_DIR/wikipedia-small.tar.gz https://atlas-group.cs.brown.edu/data/wikipedia/input_small/articles.tar.gz --no-check-certificate + wget -O $RESOURCES_DIR/index_small.txt https://atlas-group.cs.brown.edu/data/wikipedia/input_small/index.txt --no-check-certificate + fi +else + if [[ ! -f "$RESOURCES_DIR/wikipedia.tar.gz" ]]; then + # full dataset + echo "Downloading the full dataset. Caution!! Extracted size >200GB" + wget -O $RESOURCES_DIR/wikipedia.tar.gz https://atlas-group.cs.brown.edu/data/wikipedia/input/articles.tar.gz --no-check-certificate + wget -O $RESOURCES_DIR/index.txt https://atlas-group.cs.brown.edu/data/wikipedia/input/index.txt --no-check-certificate + fi +fi + +if [[ ! -d "$RESOURCES_DIR/articles" ]]; then + if [ "$1" = "--small" ]; then + # 1000 entries + echo "Extracting the small dataset." + tar -xf $RESOURCES_DIR/wikipedia-small.tar.gz -C $RESOURCES_DIR + else + # full dataset + echo "Extracting the full dataset. Caution!! Extracted size >200GB" + tar -xf $RESOURCES_DIR/wikipedia.tar.gz -C $RESOURCES_DIR + fi +else + echo "Did not extract data because of existing data." + echo "Please rm -r $RESOURCES_DIR/articles manually and rerun this script." +fi diff --git a/infrastructure/systems/GNU-Parallel/web-index/run.sh b/infrastructure/systems/GNU-Parallel/web-index/run.sh new file mode 100755 index 00000000..5b6fd32d --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/run.sh @@ -0,0 +1,30 @@ +#!/usr/bin/env bash + +cd "$(dirname "$0")" + +BENCHMARK_SHELL=${BENCHMARK_SHELL:-bash} +directory_path="inputs/articles" + +if [ ! -d "$directory_path" ]; then + echo "Error: Directory does not exist." + exit 1 +fi + +# ensure a local ./tmp directory exists for sorting +mkdir -p ./tmp +export TMPDIR=$PWD/tmp + +INPUTS="$PWD/inputs" +OUTPUT_BASE="$PWD/outputs/ngrams" + +if [[ "$@" == *"--small"* ]]; then + export INPUT_FILE="$INPUTS/index_small.txt" +else + export INPUT_FILE="$INPUTS/index.txt" +fi + +mkdir -p "$OUTPUT_BASE" + +echo "web-index" +$BENCHMARK_SHELL ./scripts/ngrams.sh "$OUTPUT_BASE" +echo $? diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/bigrams_aux.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/bigrams_aux.sh new file mode 100755 index 00000000..b9ae0f37 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/bigrams_aux.sh @@ -0,0 +1,9 @@ +( mkfifo s2 > /dev/null ) ; +( mkfifo s3 > /dev/null ) ; + +sed '$d' s2 > s3 & +tee s2 | + tail +2 | + paste s3 - +rm s2 +rm s3 diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/extract_text.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/extract_text.sh new file mode 100755 index 00000000..81e5b4c8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/extract_text.sh @@ -0,0 +1,6 @@ +while read -r line +do + cat $line | + iconv -c -t ascii//TRANSLIT | + pandoc +RTS -K64m -RTS --from html --to plain --quiet +done diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/grep-url.js b/infrastructure/systems/GNU-Parallel/web-index/scripts/grep-url.js new file mode 100755 index 00000000..7585a5c6 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/grep-url.js @@ -0,0 +1,100 @@ +#!/usr/bin/env node +// TODO: use node's URL to parse and emit a URL in normal form +// URL validation as a stream transformer +// +// Contains code by Diego Perini, as compared in +// http://mathiasbynens.be/demo/url-regex +// +// Notes on possible differences from a standard/generic validation: +// +// - utf-8 char class take in consideration the full Unicode range +// - TLDs have been made mandatory so single names like "localhost" fails +// - protocols have been restricted to ftp, http and https only as requested + +var re_weburl = new RegExp( + "^" + + // protocol identifier (optional) + // short syntax // still required + "(?:(?:(?:https?|ftp):)?\\/\\/)" + + // user:pass BasicAuth (optional) + "(?:\\S+(?::\\S*)?@)?" + + "(?:" + + // IP address exclusion + // private & local networks + "(?!(?:10|127)(?:\\.\\d{1,3}){3})" + + "(?!(?:169\\.254|192\\.168)(?:\\.\\d{1,3}){2})" + + "(?!172\\.(?:1[6-9]|2\\d|3[0-1])(?:\\.\\d{1,3}){2})" + + // IP address dotted notation octets + // excludes loopback network 0.0.0.0 + // excludes reserved space >= 224.0.0.0 + // excludes network & broadcast addresses + // (first & last IP address of each class) + "(?:[1-9]\\d?|1\\d\\d|2[01]\\d|22[0-3])" + + "(?:\\.(?:1?\\d{1,2}|2[0-4]\\d|25[0-5])){2}" + + "(?:\\.(?:[1-9]\\d?|1\\d\\d|2[0-4]\\d|25[0-4]))" + + "|" + + // host & domain names, may end with dot + // can be replaced by a shortest alternative + // (?![-_])(?:[-\\w\\u00a1-\\uffff]{0,63}[^-_]\\.)+ + "(?:" + + "(?:" + + "[a-z0-9\\u00a1-\\uffff]" + + "[a-z0-9\\u00a1-\\uffff_-]{0,62}" + + ")?" + + "[a-z0-9\\u00a1-\\uffff]\\." + + ")+" + + // TLD identifier name, may end with dot + "(?:[a-z\\u00a1-\\uffff]{2,}\\.?)" + + ")" + + // port number (optional) + "(?::\\d{2,5})?" + + // resource path (optional) + "(?:[/?#]\\S*)?" + + "$", "i" + ); + + let nregex = options => { + options = { + strict: true, + ...options + }; + + const tlds = require('./tlds'); + const v4 = '(?:25[0-5]|2[0-4]\\d|1\\d\\d|[1-9]\\d|\\d)(?:\\.(?:25[0-5]|2[0-4]\\d|1\\d\\d|[1-9]\\d|\\d)){3}'; + const protocol = `(?:(?:[a-z]+:)?//)${options.strict ? '' : '?'}`; + const auth = '(?:\\S+(?::\\S*)?@)?'; + const ip = v4; + const host = '(?:(?:[a-z\\u00a1-\\uffff0-9][-_]*)*[a-z\\u00a1-\\uffff0-9]+)'; + const domain = '(?:\\.(?:[a-z\\u00a1-\\uffff0-9]-*)*[a-z\\u00a1-\\uffff0-9]+)*'; + const tld = `(?:\\.${options.strict ? '(?:[a-z\\u00a1-\\uffff]{2,})' : `(?:${tlds.sort((a, b) => b.length - a.length).join('|')})`})\\.?`; + const port = '(?::\\d{2,5})?'; + const path = '(?:[/?#][^\\s"]*)?'; + const regex = `(?:${protocol}|www\\.)${auth}(?:localhost|${ip}|${host}${domain}${tld})${port}${path}`; + + return options.exact ? new RegExp(`(?:^${regex}$)`, 'i') : new RegExp(regex, 'ig'); + }; + + var readline = require('readline'); + + var rl = readline.createInterface({ + input: process.stdin, + output: process.stdout, + terminal: false + }); + + rl.on('line', function (line) { + let r = line.match(nregex()); + if (r) { + for (let i = 0; i < r.length; i++) { + //console.error(i);// (r[i]); + console.log(r[i]); + }; + } else { + console.log("pizza"); + } + // if (r) { + // console.log(r.join('\n')); + // } + }); + + // console.log('foo http://github.com bar //google.com'.match(nregex())); \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/ngrams.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/ngrams.sh new file mode 100755 index 00000000..58668eda --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/ngrams.sh @@ -0,0 +1,56 @@ +REPO_TOP=$(git rev-parse --show-toplevel) +export TEST_BASE=$REPO_TOP/web-index +export SCRIPT_DIR="$TEST_BASE"/scripts +export WEB_INDEX_DIR="$TEST_BASE"/inputs +export WIKI="$TEST_BASE"/inputs/articles + +cd $(dirname "$0") || exit 1 + +output_base="$1" + +rm -f {1,2,3}grams +mkfifo {1,2,3}grams + +extract_text="$SCRIPT_DIR/extract_text.sh" +bigrams_aux="$SCRIPT_DIR/bigrams_aux.sh" +trigrams_aux="$SCRIPT_DIR/trigrams_aux.sh" + +cat "$INPUT_FILE" | + sed "s#^#$WIKI/#" | + $extract_text | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + grep -vwFf "$WEB_INDEX_DIR/stopwords.txt" | + "$SCRIPT_DIR/stem-words.js" | + tee 3grams 2grams 1grams > /dev/null & + +# cat 1grams | +# sort | +# uniq -c | +# sort -rn > "$output_base/1-grams.txt" & + +# cat 2grams | +# tr -cs A-Za-z '\n' | +# tr A-Z a-z | +# $bigrams_aux | +# sort | +# uniq -c | +# sort -rn > "$output_base/2-grams.txt" & + +# cat 3grams | +# tr -cs A-Za-z '\n' | +# tr A-Z a-z | +# $trigrams_aux | +# sort | +# uniq -c | +# sort -rn > "$output_base/3-grams.txt" + +# rm -f {1,2,3}grams + + +parallel --ungroup ::: \ + "cat 1grams | sort | uniq -c | sort -rn > '$output_base/1-grams.txt'" \ + "cat 2grams | tr -cs A-Za-z '\n' | tr A-Z a-z | $bigrams_aux | sort | uniq -c | sort -rn > '$output_base/2-grams.txt'" \ + "cat 3grams | tr -cs A-Za-z '\n' | tr A-Z a-z | $trigrams_aux | sort | uniq -c | sort -rn > '$output_base/3-grams.txt'" + +rm -f {1,2,3}grams \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/p1.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/p1.sh new file mode 100755 index 00000000..a0a1a628 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/p1.sh @@ -0,0 +1,18 @@ +#!/bin/bash +PASH_TOP=${PASH_TOP:-$(git rev-parse --show-toplevel)} +WIKI=${WIKI:-$PASH_TOP/web-index} + +export WIKI +# Squash all HTML for each URL into a single line, streaming fashion +# It also prefixes with the URL + +page_per_line () { + cat "$WIKI/$0" | tr -d "\n\r" | tr -d '\n' | sed -e '/.$/a\' +} + +export -f page_per_line + +# xargs: +# add `-t` for debugging +cat $WIKI/input/index.txt | xargs -0 -d '\n' -n 1 bash -c 'page_per_line "$@"' + diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/p2.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/p2.sh new file mode 100755 index 00000000..1390b29a --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/p2.sh @@ -0,0 +1,13 @@ +#!/bin/bash +PASH_TOP=${PASH_TOP:-$(git rev-parse --show-toplevel)} +WIKI=${WIKI:-$PASH_TOP/web-index} + +cat $WIKI/input/index.txt | +sed "s#^#$WIKI#" | +iconv -c -t ascii//TRANSLIT | +pandoc +RTS -K64m -RTS --from html --to plain --quiet | +tr -cs A-Za-z '\n' | +tr A-Z a-z | +grep -vwFf $WIKI/stopwords.txt | +$WIKI/stem-words.js 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test specified\" && exit 1" + }, + "author": "", + "license": "ISC", + "dependencies": { + "natural": "^0.6.3" + } + } \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/stem-words.js b/infrastructure/systems/GNU-Parallel/web-index/scripts/stem-words.js new file mode 100755 index 00000000..905668a6 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/stem-words.js @@ -0,0 +1,19 @@ +#!/usr/bin/node + +var readline = require('readline'); +var natural = require('natural'); + +var rl = readline.createInterface({ + input: process.stdin, + output: process.stdout, + terminal: false +}); + +rl.on('line', function (line) { + //console.log(natural.PorterStemmer.stem(line)); + console.log(natural.LancasterStemmer.stem(line)); +}); + +rl.on('close', function () { + process.exit(0); +}) diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/tlds.js b/infrastructure/systems/GNU-Parallel/web-index/scripts/tlds.js new file mode 100644 index 00000000..d0bb9042 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/tlds.js @@ -0,0 +1,1543 @@ +module.exports = [ + "aaa", + "aarp", + "abarth", + "abb", + "abbott", + "abbvie", + "abc", + "able", + "abogado", + "abudhabi", + "ac", + "academy", + "accenture", + "accountant", + "accountants", + "aco", + "active", + "actor", + "ad", + "adac", + "ads", + "adult", + "ae", + "aeg", + "aero", + "aetna", + "af", + "afamilycompany", + "afl", + "africa", + "ag", + "agakhan", + "agency", + "ai", + "aig", + "aigo", + "airbus", + "airforce", + "airtel", + "akdn", + "al", + "alfaromeo", + "alibaba", + "alipay", + "allfinanz", + "allstate", + "ally", + "alsace", + "alstom", + "am", + "americanexpress", + "americanfamily", + "amex", + "amfam", + "amica", + "amsterdam", + "analytics", + "android", + "anquan", + "anz", + "ao", + "aol", + "apartments", + "app", + "apple", + "aq", + "aquarelle", + "ar", + "arab", + "aramco", + "archi", + "army", + "arpa", + "art", + "arte", + "as", + "asda", + "asia", + "associates", + "at", + "athleta", + "attorney", + "au", + "auction", + "audi", + "audible", + "audio", + "auspost", + "author", + "auto", + "autos", + "avianca", + "aw", + "aws", + "ax", + "axa", + "az", + "azure", + "ba", + "baby", + "baidu", + "banamex", + "bananarepublic", + "band", + "bank", + "bar", + "barcelona", + "barclaycard", + "barclays", + "barefoot", + "bargains", + "baseball", + "basketball", + "bauhaus", + "bayern", + "bb", + "bbc", + "bbt", + "bbva", + "bcg", + "bcn", + "bd", + "be", + "beats", + "beauty", + "beer", + "bentley", + "berlin", + "best", + "bestbuy", + "bet", + "bf", + "bg", + "bh", + "bharti", + "bi", + "bible", + "bid", + "bike", + "bing", + "bingo", + "bio", + "biz", + "bj", + "black", + "blackfriday", + "blanco", + "blockbuster", + "blog", + "bloomberg", + "blue", + "bm", + "bms", + "bmw", + "bn", + "bnl", + "bnpparibas", + "bo", + "boats", + "boehringer", + "bofa", + "bom", + "bond", + "boo", + "book", + "booking", + "bosch", + "bostik", + "boston", + "bot", + "boutique", + "box", + "br", + "bradesco", + "bridgestone", + "broadway", + "broker", + "brother", + "brussels", + "bs", + "bt", + "budapest", + "bugatti", + "build", + "builders", + "business", + "buy", + "buzz", + "bv", + "bw", + "by", + "bz", + "bzh", + "ca", + "cab", + "cafe", + "cal", + "call", + "calvinklein", + "cam", + "camera", + "camp", + "cancerresearch", + "canon", + "capetown", + "capital", + "capitalone", + "car", + "caravan", + "cards", + "care", + "career", + "careers", + "cars", + "cartier", + "casa", + "case", + "caseih", + "cash", + "casino", + "cat", + "catering", + "catholic", + "cba", + "cbn", + "cbre", + "cbs", + "cc", + "cd", + "ceb", + "center", + "ceo", + "cern", + "cf", + "cfa", + "cfd", + "cg", + "ch", + "chanel", + "channel", + "charity", + "chase", + "chat", + "cheap", + "chintai", + "christmas", + "chrome", + "chrysler", + "church", + "ci", + "cipriani", + "circle", + "cisco", + "citadel", + "citi", + "citic", + "city", + "cityeats", + "ck", + "cl", + "claims", + "cleaning", + "click", + "clinic", + "clinique", + "clothing", + "cloud", + "club", + "clubmed", + "cm", + "cn", + "co", + "coach", + "codes", + "coffee", + "college", + "cologne", + "com", + "comcast", + "commbank", + "community", + "company", + "compare", + "computer", + "comsec", + "condos", + "construction", + "consulting", + "contact", + "contractors", + "cooking", + "cookingchannel", + "cool", + "coop", + "corsica", + "country", + "coupon", + "coupons", + "courses", + "cr", + "credit", + "creditcard", + "creditunion", + "cricket", + "crown", + "crs", + "cruise", + "cruises", + "csc", + "cu", + "cuisinella", + "cv", + "cw", + "cx", + "cy", + "cymru", + "cyou", + "cz", + "dabur", + "dad", + "dance", + "data", + "date", + "dating", + "datsun", + "day", + "dclk", + "dds", + "de", + "deal", + "dealer", + "deals", + "degree", + "delivery", + "dell", + "deloitte", + "delta", + "democrat", + "dental", + "dentist", + "desi", + "design", + "dev", + "dhl", + "diamonds", + "diet", + "digital", + "direct", + "directory", + "discount", + "discover", + "dish", + "diy", + "dj", + "dk", + "dm", + "dnp", + "do", + "docs", + "doctor", + "dodge", + "dog", + "doha", + "domains", + "dot", + "download", + "drive", + "dtv", + "dubai", + "duck", + "dunlop", + "duns", + "dupont", + "durban", + "dvag", + "dvr", + "dz", + "earth", + "eat", + "ec", + "eco", + "edeka", + "edu", + "education", + "ee", + "eg", + "email", + "emerck", + "energy", + "engineer", + "engineering", + "enterprises", + "epost", + "epson", + "equipment", + "er", + "ericsson", + "erni", + "es", + "esq", + "estate", + "esurance", + "et", + "etisalat", + "eu", + "eurovision", + "eus", + "events", + "everbank", + "exchange", + "expert", + "exposed", + "express", + "extraspace", + "fage", + "fail", + "fairwinds", + "faith", + "family", + "fan", + "fans", + "farm", + "farmers", + "fashion", + "fast", + "fedex", + "feedback", + "ferrari", + "ferrero", + "fi", + "fiat", + "fidelity", + "fido", + "film", + "final", + "finance", + "financial", + "fire", + "firestone", + "firmdale", + "fish", + "fishing", + "fit", + "fitness", + "fj", + "fk", + "flickr", + "flights", + "flir", + "florist", + "flowers", + "fly", + "fm", + "fo", + "foo", + "food", + "foodnetwork", + "football", + "ford", + "forex", + "forsale", + "forum", + "foundation", + "fox", + "fr", + "free", + "fresenius", + "frl", + "frogans", + "frontdoor", + "frontier", + "ftr", + "fujitsu", + "fujixerox", + "fun", + "fund", + "furniture", + "futbol", + "fyi", + "ga", + "gal", + "gallery", + "gallo", + "gallup", + "game", + "games", + "gap", + "garden", + "gb", + "gbiz", + "gd", + "gdn", + "ge", + "gea", + "gent", + "genting", + "george", + "gf", + "gg", + "ggee", + "gh", + "gi", + "gift", + "gifts", + "gives", + "giving", + "gl", + "glade", + "glass", + "gle", + "global", + "globo", + "gm", + "gmail", + "gmbh", + "gmo", + "gmx", + "gn", + "godaddy", + "gold", + "goldpoint", + "golf", + "goo", + "goodhands", + "goodyear", + "goog", + "google", + "gop", + "got", + "gov", + "gp", + "gq", + "gr", + "grainger", + "graphics", + "gratis", + "green", + "gripe", + "grocery", + "group", + "gs", + "gt", + "gu", + "guardian", + "gucci", + "guge", + "guide", + "guitars", + "guru", + "gw", + "gy", + "hair", + "hamburg", + "hangout", + "haus", + "hbo", + "hdfc", + "hdfcbank", + "health", + "healthcare", + "help", + "helsinki", + "here", + "hermes", + "hgtv", + "hiphop", + "hisamitsu", + "hitachi", + "hiv", + "hk", + "hkt", + "hm", + "hn", + "hockey", + "holdings", + "holiday", + "homedepot", + "homegoods", + "homes", + "homesense", + "honda", + "honeywell", + "horse", + "hospital", + "host", + "hosting", + "hot", + "hoteles", + "hotels", + "hotmail", + "house", + "how", + "hr", + "hsbc", + "ht", + "hu", + "hughes", + "hyatt", + "hyundai", + "ibm", + "icbc", + "ice", + "icu", + "id", + "ie", + "ieee", + "ifm", + "ikano", + "il", + "im", + "imamat", + "imdb", + "immo", + "immobilien", + "in", + "inc", + "industries", + "infiniti", + "info", + "ing", + "ink", + "institute", + "insurance", + "insure", + "int", + "intel", + "international", + "intuit", + "investments", + "io", + "ipiranga", + "iq", + "ir", + "irish", + "is", + "iselect", + "ismaili", + "ist", + "istanbul", + "it", + "itau", + "itv", + "iveco", + "jaguar", + "java", + "jcb", + "jcp", + "je", + "jeep", + "jetzt", + "jewelry", + "jio", + "jlc", + "jll", + "jm", + "jmp", + "jnj", + "jo", + "jobs", + "joburg", + "jot", + "joy", + "jp", + "jpmorgan", + "jprs", + "juegos", + "juniper", + "kaufen", + "kddi", + "ke", + "kerryhotels", + "kerrylogistics", + "kerryproperties", + "kfh", + "kg", + "kh", + "ki", + "kia", + "kim", + "kinder", + "kindle", + "kitchen", + "kiwi", + "km", + "kn", + "koeln", + "komatsu", + "kosher", + "kp", + "kpmg", + "kpn", + "kr", + "krd", + "kred", + "kuokgroup", + "kw", + "ky", + "kyoto", + "kz", + "la", + "lacaixa", + "ladbrokes", + "lamborghini", + "lamer", + "lancaster", + "lancia", + "lancome", + "land", + "landrover", + "lanxess", + "lasalle", + "lat", + "latino", + "latrobe", + "law", + "lawyer", + "lb", + "lc", + "lds", + "lease", + "leclerc", + "lefrak", + "legal", + "lego", + "lexus", + "lgbt", + "li", + "liaison", + "lidl", + "life", + "lifeinsurance", + "lifestyle", + "lighting", + "like", + "lilly", + "limited", + "limo", + "lincoln", + "linde", + "link", + "lipsy", + "live", + "living", + "lixil", + "lk", + "llc", + "loan", + "loans", + "locker", + "locus", + "loft", + "lol", + "london", + "lotte", + "lotto", + "love", + "lpl", + "lplfinancial", + "lr", + "ls", + "lt", + "ltd", + "ltda", + "lu", + "lundbeck", + "lupin", + "luxe", + "luxury", + "lv", + "ly", + "ma", + "macys", + "madrid", + "maif", + "maison", + "makeup", + "man", + "management", + "mango", + "map", + "market", + "marketing", + "markets", + "marriott", + "marshalls", + "maserati", + "mattel", + "mba", + "mc", + "mckinsey", + "md", + "me", + "med", + "media", + "meet", + "melbourne", + "meme", + "memorial", + "men", + "menu", + "merckmsd", + "metlife", + "mg", + "mh", + "miami", + "microsoft", + "mil", + "mini", + "mint", + "mit", + "mitsubishi", + "mk", + "ml", + "mlb", + "mls", + "mm", + "mma", + "mn", + "mo", + "mobi", + "mobile", + "mobily", + "moda", + "moe", + "moi", + "mom", + "monash", + "money", + "monster", + "mopar", + "mormon", + "mortgage", + "moscow", + "moto", + "motorcycles", + "mov", + "movie", + "movistar", + "mp", + "mq", + "mr", + "ms", + "msd", + "mt", + "mtn", + "mtr", + "mu", + "museum", + "mutual", + "mv", + "mw", + "mx", + "my", + "mz", + "na", + "nab", + "nadex", + "nagoya", + "name", + "nationwide", + "natura", + "navy", + "nba", + "nc", + "ne", + "nec", + "net", + "netbank", + "netflix", + "network", + "neustar", + "new", + "newholland", + "news", + "next", + "nextdirect", + "nexus", + "nf", + "nfl", + "ng", + "ngo", + "nhk", + "ni", + "nico", + "nike", + "nikon", + "ninja", + "nissan", + "nissay", + "nl", + "no", + "nokia", + "northwesternmutual", + "norton", + "now", + "nowruz", + "nowtv", + "np", + "nr", + "nra", + "nrw", + "ntt", + "nu", + "nyc", + "nz", + "obi", + "observer", + "off", + "office", + "okinawa", + "olayan", + "olayangroup", + "oldnavy", + "ollo", + "om", + "omega", + "one", + "ong", + "onl", + "online", + "onyourside", + "ooo", + "open", + "oracle", + "orange", + "org", + "organic", + "origins", + "osaka", + "otsuka", + "ott", + "ovh", + "pa", + "page", + "panasonic", + "panerai", + "paris", + "pars", + "partners", + "parts", + "party", + "passagens", + "pay", + "pccw", + "pe", + "pet", + "pf", + "pfizer", + "pg", + "ph", + "pharmacy", + "phd", + "philips", + "phone", + "photo", + "photography", + "photos", + "physio", + "piaget", + "pics", + "pictet", + "pictures", + "pid", + "pin", + "ping", + "pink", + "pioneer", + "pizza", + "pk", + "pl", + "place", + "play", + "playstation", + "plumbing", + "plus", + "pm", + "pn", + "pnc", + "pohl", + "poker", + "politie", + "porn", + "post", + "pr", + "pramerica", + "praxi", + "press", + "prime", + "pro", + "prod", + "productions", + "prof", + "progressive", + "promo", + "properties", + "property", + "protection", + "pru", + "prudential", + "ps", + "pt", + "pub", + "pw", + "pwc", + "py", + "qa", + "qpon", + "quebec", + "quest", + "qvc", + "racing", + "radio", + "raid", + "re", + "read", + "realestate", + "realtor", + "realty", + "recipes", + "red", + "redstone", + "redumbrella", + "rehab", + "reise", + "reisen", + "reit", + "reliance", + "ren", + "rent", + "rentals", + "repair", + "report", + "republican", + "rest", + "restaurant", + "review", + "reviews", + "rexroth", + "rich", + "richardli", + "ricoh", + "rightathome", + "ril", + "rio", + "rip", + "rmit", + "ro", + "rocher", + "rocks", + "rodeo", + "rogers", + "room", + "rs", + "rsvp", + "ru", + "rugby", + "ruhr", + "run", + "rw", + "rwe", + "ryukyu", + "sa", + "saarland", + "safe", + "safety", + "sakura", + "sale", + "salon", + "samsclub", + "samsung", + "sandvik", + "sandvikcoromant", + "sanofi", + "sap", + "sarl", + "sas", + "save", + "saxo", + "sb", + "sbi", + "sbs", + "sc", + "sca", + "scb", + "schaeffler", + "schmidt", + "scholarships", + "school", + "schule", + "schwarz", + "science", + "scjohnson", + "scor", + "scot", + "sd", + "se", + "search", + "seat", + "secure", + "security", + "seek", + "select", + "sener", + "services", + "ses", + "seven", + "sew", + "sex", + "sexy", + "sfr", + "sg", + "sh", + "shangrila", + "sharp", + "shaw", + "shell", + "shia", + "shiksha", + "shoes", + "shop", + "shopping", + "shouji", + "show", + "showtime", + "shriram", + "si", + "silk", + "sina", + "singles", + "site", + "sj", + "sk", + "ski", + "skin", + "sky", + "skype", + "sl", + "sling", + "sm", + "smart", + "smile", + "sn", + "sncf", + "so", + "soccer", + "social", + "softbank", + "software", + "sohu", + "solar", + "solutions", + "song", + "sony", + "soy", + "space", + "spiegel", + "sport", + "spot", + "spreadbetting", + "sr", + "srl", + "srt", + "st", + "stada", + "staples", + "star", + "starhub", + "statebank", + "statefarm", + "statoil", + "stc", + "stcgroup", + "stockholm", + "storage", + "store", + "stream", + "studio", + "study", + "style", + "su", + "sucks", + "supplies", + "supply", + "support", + "surf", + "surgery", + "suzuki", + "sv", + "swatch", + "swiftcover", + "swiss", + "sx", + "sy", + "sydney", + "symantec", + "systems", + "sz", + "tab", + "taipei", + "talk", + "taobao", + "target", + "tatamotors", + "tatar", + "tattoo", + "tax", + "taxi", + "tc", + "tci", + "td", + "tdk", + "team", + "tech", + "technology", + "tel", + "telecity", + "telefonica", + "temasek", + "tennis", + "teva", + "tf", + "tg", + "th", + "thd", + "theater", + "theatre", + "tiaa", + "tickets", + "tienda", + "tiffany", + "tips", + "tires", + "tirol", + "tj", + "tjmaxx", + "tjx", + "tk", + "tkmaxx", + "tl", + "tm", + "tmall", + "tn", + "to", + "today", + "tokyo", + "tools", + "top", + "toray", + "toshiba", + "total", + "tours", + "town", + "toyota", + "toys", + "tr", + "trade", + "trading", + "training", + "travel", + "travelchannel", + "travelers", + "travelersinsurance", + "trust", + "trv", + "tt", + "tube", + "tui", + "tunes", + "tushu", + "tv", + "tvs", + "tw", + "tz", + "ua", + "ubank", + "ubs", + "uconnect", + "ug", + "uk", + "unicom", + "university", + "uno", + "uol", + "ups", + "us", + "uy", + "uz", + "va", + "vacations", + "vana", + "vanguard", + "vc", + "ve", + "vegas", + "ventures", + "verisign", + "versicherung", + "vet", + "vg", + "vi", + "viajes", + "video", + "vig", + "viking", + "villas", + "vin", + "vip", + "virgin", + "visa", + "vision", + "vista", + "vistaprint", + "viva", + "vivo", + "vlaanderen", + "vn", + "vodka", + "volkswagen", + "volvo", + "vote", + "voting", + "voto", + "voyage", + "vu", + "vuelos", + "wales", + "walmart", + "walter", + "wang", + "wanggou", + "warman", + "watch", + "watches", + "weather", + "weatherchannel", + "webcam", + "weber", + "website", + "wed", + "wedding", + "weibo", + "weir", + "wf", + "whoswho", + "wien", + "wiki", + "williamhill", + "win", + "windows", + "wine", + "winners", + "wme", + "wolterskluwer", + "woodside", + "work", + "works", + "world", + "wow", + "ws", + "wtc", + "wtf", + "xbox", + "xerox", + "xfinity", + "xihuan", + "xin", + "कॉम", // xn--11b4c3d + "セール", // xn--1ck2e1b + "佛山", // xn--1qqw23a + "ಭಾರತ", // xn--2scrj9c + "慈善", // xn--30rr7y + "集团", // xn--3bst00m + "在线", // xn--3ds443g + "한국", // xn--3e0b707e + "ଭାରତ", // xn--3hcrj9c + "大众汽车", // xn--3oq18vl8pn36a + "点看", // xn--3pxu8k + "คอม", // xn--42c2d9a + "ভাৰত", // xn--45br5cyl + "ভারত", // xn--45brj9c + "八卦", // xn--45q11c + "موقع", // xn--4gbrim + "বাংলা", // xn--54b7fta0cc + "公益", // xn--55qw42g + "公司", // xn--55qx5d + "香格里拉", // xn--5su34j936bgsg + "网站", // xn--5tzm5g + "移动", // xn--6frz82g + "我爱你", // xn--6qq986b3xl + "москва", // xn--80adxhks + "қаз", // xn--80ao21a + "католик", // xn--80aqecdr1a + "онлайн", // xn--80asehdb + "сайт", // xn--80aswg + "联通", // xn--8y0a063a + "срб", // xn--90a3ac + "бг", // xn--90ae + "бел", // xn--90ais + "קום", // xn--9dbq2a + "时尚", // xn--9et52u + "微博", // xn--9krt00a + "淡马锡", // xn--b4w605ferd + "ファッション", // xn--bck1b9a5dre4c + "орг", // xn--c1avg + "नेट", // xn--c2br7g + "ストア", // xn--cck2b3b + "삼성", // xn--cg4bki + "சிங்கப்பூர்", // xn--clchc0ea0b2g2a9gcd + "商标", // xn--czr694b + "商店", // xn--czrs0t + "商城", // xn--czru2d + "дети", // xn--d1acj3b + "мкд", // xn--d1alf + "ею", // xn--e1a4c + "ポイント", // xn--eckvdtc9d + "新闻", // xn--efvy88h + "工行", // xn--estv75g + "家電", // xn--fct429k + "كوم", // xn--fhbei + "中文网", // xn--fiq228c5hs + "中信", // xn--fiq64b + "中国", // xn--fiqs8s + "中國", // xn--fiqz9s + "娱乐", // xn--fjq720a + "谷歌", // xn--flw351e + "భారత్", // xn--fpcrj9c3d + "ලංකා", // xn--fzc2c9e2c + "電訊盈科", // xn--fzys8d69uvgm + "购物", // xn--g2xx48c + "クラウド", // xn--gckr3f0f + "ભારત", // xn--gecrj9c + "通販", // xn--gk3at1e + "भारतम्", // xn--h2breg3eve + "भारत", // xn--h2brj9c + "भारोत", // xn--h2brj9c8c + "网店", // xn--hxt814e + "संगठन", // xn--i1b6b1a6a2e + "餐厅", // xn--imr513n + "网络", // xn--io0a7i + "ком", // xn--j1aef + "укр", // xn--j1amh + "香港", // xn--j6w193g + "诺基亚", // xn--jlq61u9w7b + "食品", // xn--jvr189m + "飞利浦", // xn--kcrx77d1x4a + "台湾", // xn--kprw13d + "台灣", // xn--kpry57d + "手表", // xn--kpu716f + "手机", // xn--kput3i + "мон", // xn--l1acc + "الجزائر", // xn--lgbbat1ad8j + "عمان", // xn--mgb9awbf + "ارامكو", // xn--mgba3a3ejt + "ایران", // xn--mgba3a4f16a + "العليان", // xn--mgba7c0bbn0a + "اتصالات", // xn--mgbaakc7dvf + "امارات", // xn--mgbaam7a8h + "بازار", // xn--mgbab2bd + "پاکستان", // xn--mgbai9azgqp6j + "الاردن", // xn--mgbayh7gpa + "موبايلي", // xn--mgbb9fbpob + "بارت", // xn--mgbbh1a + "بھارت", // xn--mgbbh1a71e + "المغرب", // xn--mgbc0a9azcg + "ابوظبي", // xn--mgbca7dzdo + "السعودية", // xn--mgberp4a5d4ar + "ڀارت", // xn--mgbgu82a + "كاثوليك", // xn--mgbi4ecexp + "سودان", // xn--mgbpl2fh + "همراه", // xn--mgbt3dhd + "عراق", // xn--mgbtx2b + "مليسيا", // xn--mgbx4cd0ab + "澳門", // xn--mix891f + "닷컴", // xn--mk1bu44c + "政府", // xn--mxtq1m + "شبكة", // xn--ngbc5azd + "بيتك", // xn--ngbe9e0a + "عرب", // xn--ngbrx + "გე", // xn--node + "机构", // xn--nqv7f + "组织机构", // xn--nqv7fs00ema + "健康", // xn--nyqy26a + "ไทย", // xn--o3cw4h + "سورية", // xn--ogbpf8fl + "招聘", // xn--otu796d + "рус", // xn--p1acf + "рф", // xn--p1ai + "珠宝", // xn--pbt977c + "تونس", // xn--pgbs0dh + "大拿", // xn--pssy2u + "みんな", // xn--q9jyb4c + "グーグル", // xn--qcka1pmc + "ελ", // xn--qxam + "世界", // xn--rhqv96g + "書籍", // xn--rovu88b + "ഭാരതം", // xn--rvc1e0am3e + "ਭਾਰਤ", // xn--s9brj9c + "网址", // xn--ses554g + "닷넷", // xn--t60b56a + "コム", // xn--tckwe + "天主教", // xn--tiq49xqyj + "游戏", // xn--unup4y + "vermögensberater", // xn--vermgensberater-ctb + "vermögensberatung", // xn--vermgensberatung-pwb + "企业", // xn--vhquv + "信息", // xn--vuq861b + "嘉里大酒店", // xn--w4r85el8fhu5dnra + "嘉里", // xn--w4rs40l + "مصر", // xn--wgbh1c + "قطر", // xn--wgbl6a + "广东", // xn--xhq521b + "இலங்கை", // xn--xkc2al3hye2a + "இந்தியா", // xn--xkc2dl3a5ee0h + "հայ", // xn--y9a3aq + "新加坡", // xn--yfro4i67o + "فلسطين", // xn--ygbi2ammx + "政务", // xn--zfr164b + "xxx", + "xyz", + "yachts", + "yahoo", + "yamaxun", + "yandex", + "ye", + "yodobashi", + "yoga", + "yokohama", + "you", + "youtube", + "yt", + "yun", + "za", + "zappos", + "zara", + "zero", + "zip", + "zippo", + "zm", + "zone", + "zuerich", + "zw" +]; diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/trigrams_aux.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/trigrams_aux.sh new file mode 100755 index 00000000..99ccc5b4 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/trigrams_aux.sh @@ -0,0 +1,16 @@ +s2=$(mktemp -u) +s3=$(mktemp -u) + +mkfifo $s2 $s3 + +tee $s2 | + tail +2 | + paste $s2 - | + tee $s3 | + cut -f 1 | + tail +3 | + paste $s3 - | + sed "\$d" | + sed "\$d" + +rm $s2 $s3 \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/web-index-aux.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/web-index-aux.sh new file mode 100644 index 00000000..cb6fd403 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/web-index-aux.sh @@ -0,0 +1,141 @@ +mkfifo {1,2,3}grams + +bigrams_aux() +{ + ( mkfifo s2 > /dev/null ) ; + ( mkfifo s3 > /dev/null ) ; + + sed '$d' s2 > s3 & + tee s2 | + tail +2 | + paste s3 - + rm s2 + rm s3 +} + +bigram_aux_map() +{ + IN=$1 + OUT=$2 + AUX_HEAD=$3 + AUX_TAIL=$4 + + s2=$(mktemp -u) + aux1=$(mktemp -u) + aux2=$(mktemp -u) + aux3=$(mktemp -u) + temp=$(mktemp -u) + + mkfifo $s2 + mkfifo $aux1 + mkfifo $aux2 + mkfifo $aux3 + + ## New way of doing it using an intermediate file. This is slow + ## but doesn't deadlock + cat $IN > $temp + + sed '$d' $temp > $aux3 & + cat $temp | head -n 1 > $AUX_HEAD & + cat $temp | tail -n 1 > $AUX_TAIL & + cat $temp | tail +2 | paste $aux3 - > $OUT & + + wait + + rm $temp + rm $s2 + rm $aux1 + rm $aux2 + rm $aux3 +} + +bigram_aux_reduce() +{ + IN1=$1 + AUX_HEAD1=$2 + AUX_TAIL1=$3 + IN2=$4 + AUX_HEAD2=$5 + AUX_TAIL2=$6 + OUT=$7 + AUX_HEAD_OUT=$8 + AUX_TAIL_OUT=$9 + + temp=$(mktemp -u) + + mkfifo $temp + + cat $AUX_HEAD1 > $AUX_HEAD_OUT & + cat $AUX_TAIL2 > $AUX_TAIL_OUT & + paste $AUX_TAIL1 $AUX_HEAD2 > $temp & + cat $IN1 $temp $IN2 > $OUT & + + wait + + rm $temp +} + + +trigrams_aux() +{ + s2=$(mktemp -u) + s3=$(mktemp -u) + + mkfifo $s2 $s3 + + tee $s2 | + tail +2 | + paste $s2 - | + tee $s3 | + cut -f 1 | + tail +3 | + paste $s3 - | + sed "\$d" | + sed "\$d" + + rm $s2 $s3 +} + + +extract_text() +{ + while read -r line + do + cat $line | + iconv -c -t ascii//TRANSLIT | + pandoc +RTS -K64m -RTS --from html --to plain --quiet + done +} + + +cat $IN | + sed "s#^#$WIKI#" | + extract_text | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + grep -vwFf $WEB_INDEX_DIR/stopwords.txt | + $WEB_INDEX_DIR/stem-words.js | + tee 3grams 2grams 1grams > /dev/null & + +cat 1grams | + sort | + uniq -c | + sort -rn > 1-grams.txt & + +cat 2grams | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + bigrams_aux | + sort | + uniq -c | + sort -rn > 2-grams.txt & + +cat 3grams | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + trigrams_aux | + sort | + uniq -c | + sort -rn # > 3-grams.txt + +rm {1,2,3}grams diff --git a/infrastructure/systems/GNU-Parallel/web-index/scripts/web-index.sh b/infrastructure/systems/GNU-Parallel/web-index/scripts/web-index.sh new file mode 100755 index 00000000..a7004e7c --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/scripts/web-index.sh @@ -0,0 +1,149 @@ +#!/bin/bash +PASH_TOP=${PASH_TOP:-$(git rev-parse --show-toplevel)} +IN=${IN:-$PASH_TOP/web-index/input/index.txt} +WEB_INDEX_DIR=${WEB_INDEX_DIR:-$PASH_TOP/web-index/input} +WIKI=${WIKI:-$PASH_TOP/web-index/} + +mkfifo {1,2,3}grams + +bigrams_aux() +{ + ( mkfifo s2 > /dev/null ) ; + ( mkfifo s3 > /dev/null ) ; + + sed '$d' s2 > s3 & + tee s2 | + tail +2 | + paste s3 - + rm s2 + rm s3 +} + +bigram_aux_map() +{ + IN=$1 + OUT=$2 + AUX_HEAD=$3 + AUX_TAIL=$4 + + s2=$(mktemp -u) + aux1=$(mktemp -u) + aux2=$(mktemp -u) + aux3=$(mktemp -u) + temp=$(mktemp -u) + + mkfifo $s2 + mkfifo $aux1 + mkfifo $aux2 + mkfifo $aux3 + + ## New way of doing it using an intermediate file. This is slow + ## but doesn't deadlock + cat $IN > $temp + + sed '$d' $temp > $aux3 & + cat $temp | head -n 1 > $AUX_HEAD & + cat $temp | tail -n 1 > $AUX_TAIL & + cat $temp | tail +2 | paste $aux3 - > $OUT & + + wait + + rm $temp + rm $s2 + rm $aux1 + rm $aux2 + rm $aux3 +} + +bigram_aux_reduce() +{ + IN1=$1 + AUX_HEAD1=$2 + AUX_TAIL1=$3 + IN2=$4 + AUX_HEAD2=$5 + AUX_TAIL2=$6 + OUT=$7 + AUX_HEAD_OUT=$8 + AUX_TAIL_OUT=$9 + + temp=$(mktemp -u) + + mkfifo $temp + + cat $AUX_HEAD1 > $AUX_HEAD_OUT & + cat $AUX_TAIL2 > $AUX_TAIL_OUT & + paste $AUX_TAIL1 $AUX_HEAD2 > $temp & + cat $IN1 $temp $IN2 > $OUT & + + wait + + rm $temp +} + + +trigrams_aux() +{ + s2=$(mktemp -u) + s3=$(mktemp -u) + + mkfifo $s2 $s3 + + tee $s2 | + tail +2 | + paste $s2 - | + tee $s3 | + cut -f 1 | + tail +3 | + paste $s3 - | + sed "\$d" | + sed "\$d" + + rm $s2 $s3 +} + + +extract_text() +{ + while read -r line + do + cat $line | + iconv -c -t ascii//TRANSLIT | + pandoc +RTS -K64m -RTS --from html --to plain --quiet + done +} + +export -f extract_text + +head $IN | + sed "s#^#$WIKI#" | + extract_text | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + grep -vwFf $WIKI/stopwords.txt | + $WIKI/stem-words.js | + tee 3grams 2grams 1grams > /dev/null & + +cat 1grams | + sort | + uniq -c | + sort -rn > 1-grams.txt & + +cat 2grams | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + bigrams_aux | + sort | + uniq -c | + sort -rn > 2-grams.txt & + +cat 3grams | + tr -cs A-Za-z '\n' | + tr A-Z a-z | + trigrams_aux | + sort | + uniq -c | + sort -rn > 3-grams.txt & + +# rm -f {1,2,3}grams {1,2,3}-grams.txt s2 s3 + diff --git a/infrastructure/systems/GNU-Parallel/web-index/stopwords.txt b/infrastructure/systems/GNU-Parallel/web-index/stopwords.txt new file mode 100644 index 00000000..49dd96e6 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/stopwords.txt @@ -0,0 +1,127 @@ +i +me +my +myself +we +our +ours +ourselves +you +your +yours +yourself +yourselves +he +him +his +himself +she +her +hers +herself +it +its +itself +they +them +their +theirs +themselves +what +which +who +whom +this +that +these +those +am +is +are +was +were +be +been +being +have +has +had +having +do +does +did +doing +a +an +the +and +but +if +or +because +as +until +while +of +at +by +for +with +about +against +between +into +through +during +before +after +above +below +to +from +up +down +in +out +on +off +over +under +again +further +then +once +here +there +when +where +why +how +all +any +both +each +few +more +most +other +some +such +no +nor +not +only +own +same +so +than +too +very +s +t +can +will +just +don +should +now \ No newline at end of file diff --git a/infrastructure/systems/GNU-Parallel/web-index/verify.sh b/infrastructure/systems/GNU-Parallel/web-index/verify.sh new file mode 100755 index 00000000..223936f8 --- /dev/null +++ b/infrastructure/systems/GNU-Parallel/web-index/verify.sh @@ -0,0 +1,35 @@ +#!/bin/bash +REPO_TOP=$(git rev-parse --show-toplevel) +eval_dir="${REPO_TOP}/web-index/outputs" +hashes_dir="${REPO_TOP}/web-index/hashes" + +# create hashes directory if it does not exist +if [ ! -d "${hashes_dir}" ]; then + mkdir "${hashes_dir}" +fi + +suffix=".full" +if [[ "$@" == *"--small"* ]]; then + suffix=".small" +fi + +if [[ "$@" == *"--generate"* ]]; then + # generate hashes and store in hashes directory for all *grams.txt files + for file in $(find ${eval_dir} -name "*grams.txt"); do + hash=$(md5sum <(sort "$file") | cut -d ' ' -f 1) + echo "${hash}" > "${hashes_dir}/$(basename ${file})${suffix}.hash" + echo "$file $hash" + done + exit 0 +fi + +# verify hashes for all *grams.txt files +for file in $(find ${eval_dir} -name "*grams.txt"); do + hash=$(md5sum <(sort "$file") | cut -d ' ' -f 1) + expected_hash=$(cat "${hashes_dir}/$(basename ${file})${suffix}.hash") + match=0 + if [[ "${hash}" != "${expected_hash}" ]]; then + match=1 + fi + echo "$file $match" +done