Closes #637 (#735)

* first half of dataloader * updates to plant-phenotype script * Complete plant-phenotype dataset loader * unit test fixes * fix formatting * Updates to readme to include tutotrials, updated datasets, and misc content tweaks (#730) Small changes only * typo (#732) * WIP Dataset Visualization Script (#688) * edit * unchange * stats * added init for ptm * added proc meta script * add single * add vis code * added vis changes * remove proc file * add vis code * add paper script * edit scripts * edit scripts * add readme * remove wip code * add ngram back in * black and isort vis code * move * added pdfs * added pdfs that are not local and not broken * added agg pdf * update streamlit instructions (#734) update streamlit instructions * refactor: Refactor PPR implementation to HF hub schema --------- Co-authored-by: Jason Alan Fries <[email protected]> Co-authored-by: barthfab <[email protected]> Co-authored-by: Rosaline Su <[email protected]> Co-authored-by: Gabriel Altay <[email protected]> Co-authored-by: Mario Sänger <[email protected]>
bigscience-workshop · Oct 24, 2024 · 28d0c95 · 28d0c95
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diff --git a/bigbio/hub/hub_repos/ppr/README.md b/bigbio/hub/hub_repos/ppr/README.md
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+
+---
+language: 
+- en
+bigbio_language: 
+- English
+license: unknown
+multilinguality: monolingual
+bigbio_license_shortname: UNKNOWN
+pretty_name: PPR
+homepage: https://github.com/DMCB-GIST/PPRcorpus
+bigbio_pubmed: True
+bigbio_public: True
+bigbio_tasks: 
+- NAMED_ENTITY_RECOGNITION
+- RELATION_EXTRACTION
+---
+
+
+# Dataset Card for PPR
+
+## Dataset Description
+
+- **Homepage:** https://github.com/DMCB-GIST/PPRcorpus
+- **Pubmed:** True
+- **Public:** True
+- **Tasks:** NER,RE
+
+The Plant-Phenotype corpus is a text corpus with human annotations of plants, phenotypes, and their relations on a corpus in 600 PubMed abstracts.
+
+## Citation Information
+
+```
+@article{cho2022plant,
+  author    = {Cho, Hyejin and Kim, Baeksoo and Choi, Wonjun and Lee, Doheon and Lee, Hyunju},
+  title     = {Plant phenotype relationship corpus for biomedical relationships between plants and phenotypes},
+  journal   = {Scientific Data},
+  volume    = {9},
+  year      = {2022},
+  publisher = {Nature Publishing Group},
+  doi       = {https://doi.org/10.1038/s41597-022-01350-1},
+}
+```