From a231ce471415b0304e9535f05a0f22ed380bd1a8 Mon Sep 17 00:00:00 2001 From: Michael L Heuer Date: Tue, 16 Apr 2024 09:25:10 -0500 Subject: [PATCH] Update bcftools container image to 1.20--h8b25389_0. --- core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala | 4 ++-- .../main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala | 4 ++-- core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala index a4884c5..9cc7461 100644 --- a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala +++ b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala @@ -35,8 +35,8 @@ class BcftoolsCallArgs extends Args4jBase { @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.") var executable: String = "bcftools" - @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.") - var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0" + @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.") + var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0" @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.") var sudo: Boolean = false diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala index ce78b51..41aca43 100644 --- a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala +++ b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala @@ -36,8 +36,8 @@ class BcftoolsMpileupArgs extends Args4jBase { @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.") var executable: String = "bcftools" - @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.") - var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0" + @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.") + var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0" @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.") var sudo: Boolean = false diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala index 4ae8208..25feb06 100644 --- a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala +++ b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala @@ -39,8 +39,8 @@ class BcftoolsNormArgs extends Args4jBase { @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.") var executable: String = "bcftools" - @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.") - var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0" + @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.") + var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0" @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.") var sudo: Boolean = false