diff --git a/mkdocs.yml b/mkdocs.yml index 04c07297ac..be262a8910 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -51,7 +51,7 @@ theme: logo: images/logo.png features: - navigation.sections -copyright: Copyright © 2018-2022, BIDS Contributors - CC BY 4.0 +copyright: Copyright © BIDS Contributors - CC BY 4.0 extra: generator: false social: diff --git a/src/appendices/coordinate-systems.md b/src/appendices/coordinate-systems.md index 157f327d79..5a484e312f 100644 --- a/src/appendices/coordinate-systems.md +++ b/src/appendices/coordinate-systems.md @@ -86,7 +86,7 @@ of restricted keywords for MEG, EEG, or iEEG, please open a new issue on the Note that the short descriptions below may not capture all details. For detailed descriptions of the coordinate systems below, please see the -[FieldTrip webpage](https://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined). +[FieldTrip webpage](https://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined/). ### Commonly used anatomical landmarks in MEG, EEG, and iEEG research diff --git a/src/appendices/meg-file-formats.md b/src/appendices/meg-file-formats.md index c6f8649064..e16c86fe20 100644 --- a/src/appendices/meg-file-formats.md +++ b/src/appendices/meg-file-formats.md @@ -356,7 +356,7 @@ the two marker measurements occur before and after the raw data acquisition, `pre` and `post` are used to differentiate the two situations. More about the KIT/Yokogawa/Ricoh data organization at: -[https://www.fieldtriptoolbox.org/getting_started/yokogawa](https://www.fieldtriptoolbox.org/getting_started/yokogawa) +[https://www.fieldtriptoolbox.org/getting_started/yokogawa](https://www.fieldtriptoolbox.org/getting_started/yokogawa/) ## KRISS diff --git a/src/appendices/meg-systems.md b/src/appendices/meg-systems.md index ef5bd613d1..189d0ead31 100644 --- a/src/appendices/meg-systems.md +++ b/src/appendices/meg-systems.md @@ -20,7 +20,7 @@ Restricted keywords for ManufacturersModelName field in the `*_meg.json` file: | CTF-275 | CTF | CTF-275: OMEGA 2000 | | Neuromag-122 | Neuromag/Elekta/Megin | | | ElektaVectorview | Neuromag/Elekta/Megin | 102 magnetometers + 204 planar gradiometers | -| ElektaTRIUX | Neuromag/Elekta/Megin | [https://www.elekta.com/diagnostic-solutions/](https://www.elekta.com/diagnostic-solutions/) | +| ElektaTRIUX | Neuromag/Elekta/Megin | [https://www.elekta.com/products/neurosurgery/](https://www.elekta.com/products/neurosurgery/) | | 4D-Magnes-WH2500 | BTi/4D | | | 4D-Magnes-WH3600 | BTi/4D | | | KIT-157 | KIT/Yokogawa | | diff --git a/src/modality-specific-files/magnetoencephalography.md b/src/modality-specific-files/magnetoencephalography.md index 490662d34a..c064b64209 100644 --- a/src/modality-specific-files/magnetoencephalography.md +++ b/src/modality-specific-files/magnetoencephalography.md @@ -408,12 +408,12 @@ A guide for using macros can be found at {{ MACROS___make_sidecar_table("meg.MEGCoordsystemFiducialsInformation") }} For more information on the definition of anatomical landmarks, please visit: -[http://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined](http://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined) +[https://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined](https://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined) For more information on typical coordinate systems for MEG-MRI coregistration: -[http://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined](http://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined), +[https://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined](https://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined), or: -[http://neuroimage.usc.edu/brainstorm/CoordinateSystems](http://neuroimage.usc.edu/brainstorm/CoordinateSystems) +[https://neuroimage.usc.edu/brainstorm/CoordinateSystems](https://neuroimage.usc.edu/brainstorm/CoordinateSystems) ## Landmark photos (`*_photo.`) diff --git a/src/schema/objects/metadata.yaml b/src/schema/objects/metadata.yaml index b26e5e78fc..3e7d3e59a6 100644 --- a/src/schema/objects/metadata.yaml +++ b/src/schema/objects/metadata.yaml @@ -385,7 +385,7 @@ CellType: description: | Describes the type of cell analyzed. Values SHOULD come from the - [cell ontology](http://obofoundry.org/ontology/cl.html). + [cell ontology](https://obofoundry.org/ontology/cl.html). type: string ChunkTransformationMatrix: name: ChunkTransformationMatrix diff --git a/src/schema/rules/sidecars/micr.yaml b/src/schema/rules/sidecars/micr.yaml index 0fa46bfcf8..f2f490953f 100644 --- a/src/schema/rules/sidecars/micr.yaml +++ b/src/schema/rules/sidecars/micr.yaml @@ -50,7 +50,7 @@ MicroscopySample: level: recommended description_addendum: | From [DICOM Body Part - Examined](http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_L.html#chapter_L) + Examined](https://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_L.html#chapter_L) (for example `"BRAIN"`). BodyPartDetails: recommended BodyPartDetailsOntology: optional