diff --git a/src/appendices/coordinate-systems.md b/src/appendices/coordinate-systems.md index 157f327d79..d7ac86b81f 100644 --- a/src/appendices/coordinate-systems.md +++ b/src/appendices/coordinate-systems.md @@ -212,7 +212,7 @@ Unless specified explicitly in the sidecar file in the | NIHPD | Pediatric templates generated from the NIHPD sample. Available for different age groups (4.5–18.5 y.o., 4.5–8.5 y.o., 7–11 y.o., 7.5–13.5 y.o., 10–14 y.o., 13–18.5 y.o. This template also comes in either -symmetric or -asymmetric flavor. | | [https://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1](https://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1) | | OASIS30AntsOASISAnts | | | [https://figshare.com/articles/ANTs_ANTsR_Brain_Templates/915436](https://figshare.com/articles/ANTs_ANTsR_Brain_Templates/915436) | | OASIS30Atropos | | | [https://mindboggle.info/data.html](https://mindboggle.info/data.html) | -| Talairach | Piecewise linear scaling of the brain is implemented as described in TT88. | | [http://talairach.org/](http://talairach.org/) | +| Talairach | Piecewise linear scaling of the brain is implemented as described in TT88. | | [https://talairach.org/](https://talairach.org/) | | UNCInfant | Infant Brain Atlases from Neonates to 1- and 2-year-olds. | | [https://www.nitrc.org/projects/pediatricatlas](https://www.nitrc.org/projects/pediatricatlas) | The following template identifiers are retained for backwards compatibility diff --git a/src/modality-specific-files/magnetoencephalography.md b/src/modality-specific-files/magnetoencephalography.md index 7aae90c560..c064b64209 100644 --- a/src/modality-specific-files/magnetoencephalography.md +++ b/src/modality-specific-files/magnetoencephalography.md @@ -408,10 +408,10 @@ A guide for using macros can be found at {{ MACROS___make_sidecar_table("meg.MEGCoordsystemFiducialsInformation") }} For more information on the definition of anatomical landmarks, please visit: -[http://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined](http://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined) +[https://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined](https://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined) For more information on typical coordinate systems for MEG-MRI coregistration: -[http://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined](http://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined), +[https://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined](https://www.fieldtriptoolbox.org/faq/how_are_the_different_head_and_mri_coordinate_systems_defined), or: [https://neuroimage.usc.edu/brainstorm/CoordinateSystems](https://neuroimage.usc.edu/brainstorm/CoordinateSystems) diff --git a/src/modality-specific-files/microscopy.md b/src/modality-specific-files/microscopy.md index f70e521321..80f3594583 100644 --- a/src/modality-specific-files/microscopy.md +++ b/src/modality-specific-files/microscopy.md @@ -47,7 +47,7 @@ tiled format, or vice-versa. Microscopy raw data MUST be stored in one of the following formats: -- [Portable Network Graphics](http://www.libpng.org/pub/png/) (`.png`) +- [Portable Network Graphics](https://www.libpng.org/pub/png/) (`.png`) - [Tag Image File Format](https://en.wikipedia.org/wiki/TIFF) (`.tif`) diff --git a/src/schema/objects/extensions.yaml b/src/schema/objects/extensions.yaml index 1a0dc4d299..2766c6de58 100644 --- a/src/schema/objects/extensions.yaml +++ b/src/schema/objects/extensions.yaml @@ -208,7 +208,7 @@ png: value: .png display_name: Portable Network Graphics description: | - A [Portable Network Graphics](http://www.libpng.org/pub/png/) file. + A [Portable Network Graphics](https://www.libpng.org/pub/png/) file. pos: value: .pos display_name: Head Point Position diff --git a/src/schema/objects/metadata.yaml b/src/schema/objects/metadata.yaml index b26e5e78fc..7b3409698e 100644 --- a/src/schema/objects/metadata.yaml +++ b/src/schema/objects/metadata.yaml @@ -385,7 +385,7 @@ CellType: description: | Describes the type of cell analyzed. Values SHOULD come from the - [cell ontology](http://obofoundry.org/ontology/cl.html). + [cell ontology](https://obofoundry.org/ontology/cl.html). type: string ChunkTransformationMatrix: name: ChunkTransformationMatrix @@ -453,7 +453,7 @@ CogPOID: display_name: Cognitive Paradigm Ontology ID description: | [URI](SPEC_ROOT/common-principles.md#uniform-resource-indicator) - of the corresponding [CogPO](http://www.cogpo.org/) term. + of the corresponding [CogPO](https://www.cogpo.org/) term. type: string format: uri CoilCombinationMethod: @@ -2638,10 +2638,10 @@ RepetitionTime: and the beginning of acquisition of the volume following it (TR). When used in the context of functional acquisitions this parameter best corresponds to - [DICOM Tag 0020, 0110](http://dicomlookup.com/lookup.asp?sw=Tnumber&q=(0020,0110)): + [DICOM Tag 0020, 0110](https://dicomlookup.com/lookup.asp?sw=Tnumber&q=(0020,0110)): the "time delta between images in a dynamic of functional set of images" but may also be found in - [DICOM Tag 0018, 0080](http://dicomlookup.com/lookup.asp?sw=Tnumber&q=(0018,0080)): + [DICOM Tag 0018, 0080](https://dicomlookup.com/lookup.asp?sw=Tnumber&q=(0018,0080)): "the period of time in msec between the beginning of a pulse sequence and the beginning of the succeeding (essentially identical) pulse sequence". @@ -2658,7 +2658,7 @@ RepetitionTimeExcitation: display_name: Repetition Time Excitation description: | The interval, in seconds, between two successive excitations. - [DICOM Tag 0018, 0080](http://dicomlookup.com/lookup.asp?sw=Tnumber&q=(0018,0080)) + [DICOM Tag 0018, 0080](https://dicomlookup.com/lookup.asp?sw=Tnumber&q=(0018,0080)) best refers to this parameter. This field may be used together with the `"RepetitionTimePreparation"` for certain use cases, such as