From adc75fa2b4874823bae33b8ca611eeb322c0f221 Mon Sep 17 00:00:00 2001 From: MEDFormat <81439134+MEDFormat@users.noreply.github.com> Date: Thu, 17 Oct 2024 11:41:38 -0600 Subject: [PATCH 1/8] Add files via upload --- test.medd/g1_0001.ticd/g1_0001.rdat | Bin 0 -> 1112 bytes test.medd/g1_0001.ticd/g1_0001.ridx | Bin 0 -> 1072 bytes .../g1_0001_s0001.tisd/g1_0001_s0001.tdat | Bin 0 -> 1096 bytes .../g1_0001_s0001.tisd/g1_0001_s0001.tidx | Bin 0 -> 1072 bytes .../g1_0001_s0001.tisd/g1_0001_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g1_0002.ticd/g1_0002.rdat | Bin 0 -> 1112 bytes test.medd/g1_0002.ticd/g1_0002.ridx | Bin 0 -> 1072 bytes .../g1_0002_s0001.tisd/g1_0002_s0001.tdat | Bin 0 -> 1096 bytes .../g1_0002_s0001.tisd/g1_0002_s0001.tidx | Bin 0 -> 1072 bytes .../g1_0002_s0001.tisd/g1_0002_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g2_0001.ticd/g2_0001.rdat | Bin 0 -> 1112 bytes test.medd/g2_0001.ticd/g2_0001.ridx | Bin 0 -> 1072 bytes .../g2_0001_s0001.tisd/g2_0001_s0001.tdat | Bin 0 -> 1096 bytes .../g2_0001_s0001.tisd/g2_0001_s0001.tidx | Bin 0 -> 1072 bytes .../g2_0001_s0001.tisd/g2_0001_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g2_0002.ticd/g2_0002.rdat | Bin 0 -> 1112 bytes test.medd/g2_0002.ticd/g2_0002.ridx | Bin 0 -> 1072 bytes .../g2_0002_s0001.tisd/g2_0002_s0001.tdat | Bin 0 -> 1096 bytes .../g2_0002_s0001.tisd/g2_0002_s0001.tidx | Bin 0 -> 1072 bytes .../g2_0002_s0001.tisd/g2_0002_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g3_0001.ticd/g3_0001.rdat | Bin 0 -> 1112 bytes test.medd/g3_0001.ticd/g3_0001.ridx | Bin 0 -> 1072 bytes .../g3_0001_s0001.tisd/g3_0001_s0001.tdat | Bin 0 -> 1096 bytes .../g3_0001_s0001.tisd/g3_0001_s0001.tidx | Bin 0 -> 1072 bytes .../g3_0001_s0001.tisd/g3_0001_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g3_0002.ticd/g3_0002.rdat | Bin 0 -> 1112 bytes test.medd/g3_0002.ticd/g3_0002.ridx | Bin 0 -> 1072 bytes .../g3_0002_s0001.tisd/g3_0002_s0001.tdat | Bin 0 -> 1096 bytes .../g3_0002_s0001.tisd/g3_0002_s0001.tidx | Bin 0 -> 1072 bytes .../g3_0002_s0001.tisd/g3_0002_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g4_0001.ticd/g4_0001.rdat | Bin 0 -> 1112 bytes test.medd/g4_0001.ticd/g4_0001.ridx | Bin 0 -> 1072 bytes .../g4_0001_s0001.tisd/g4_0001_s0001.tdat | Bin 0 -> 1096 bytes .../g4_0001_s0001.tisd/g4_0001_s0001.tidx | Bin 0 -> 1072 bytes .../g4_0001_s0001.tisd/g4_0001_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g4_0002.ticd/g4_0002.rdat | Bin 0 -> 1112 bytes test.medd/g4_0002.ticd/g4_0002.ridx | Bin 0 -> 1072 bytes .../g4_0002_s0001.tisd/g4_0002_s0001.tdat | Bin 0 -> 1096 bytes .../g4_0002_s0001.tisd/g4_0002_s0001.tidx | Bin 0 -> 1072 bytes .../g4_0002_s0001.tisd/g4_0002_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g5_0001.ticd/g5_0001.rdat | Bin 0 -> 1112 bytes test.medd/g5_0001.ticd/g5_0001.ridx | Bin 0 -> 1072 bytes .../g5_0001_s0001.tisd/g5_0001_s0001.tdat | Bin 0 -> 1096 bytes .../g5_0001_s0001.tisd/g5_0001_s0001.tidx | Bin 0 -> 1072 bytes .../g5_0001_s0001.tisd/g5_0001_s0001.tmet | Bin 0 -> 16384 bytes test.medd/g5_0002.ticd/g5_0002.rdat | Bin 0 -> 1112 bytes test.medd/g5_0002.ticd/g5_0002.ridx | Bin 0 -> 1072 bytes .../g5_0002_s0001.tisd/g5_0002_s0001.tdat | Bin 0 -> 1096 bytes .../g5_0002_s0001.tisd/g5_0002_s0001.tidx | Bin 0 -> 1072 bytes .../g5_0002_s0001.tisd/g5_0002_s0001.tmet | Bin 0 -> 16384 bytes test.medd/test.rdat | Bin 0 -> 1168 bytes test.medd/test.ridx | Bin 0 -> 1096 bytes 52 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 test.medd/g1_0001.ticd/g1_0001.rdat create mode 100644 test.medd/g1_0001.ticd/g1_0001.ridx create mode 100644 test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tdat create mode 100644 test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tidx create mode 100644 test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tmet create mode 100644 test.medd/g1_0002.ticd/g1_0002.rdat create mode 100644 test.medd/g1_0002.ticd/g1_0002.ridx create mode 100644 test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tdat create mode 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.../anat/sub-01_ses-preimp_T1w.nii.gz | 0 .../ses-preimp/sub-01_ses-preimp_scans.tsv | 2 + 68 files changed, 508 insertions(+) create mode 100644 ieeg_MED/README create mode 100644 ieeg_MED/dataset_description.json create mode 100644 ieeg_MED/participants.json create mode 100644 ieeg_MED/participants.tsv create mode 100644 ieeg_MED/sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_coordsystem.json create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv create mode 100644 ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g1_0001.ticd/g1_0001.rdat (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g1_0001.ticd/g1_0001.ridx (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tdat (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tidx (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tmet (100%) rename {test.medd => 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ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g3_0002.ticd/g3_0002_s0001.tisd/g3_0002_s0001.tmet (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g4_0001.ticd/g4_0001.rdat (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g4_0001.ticd/g4_0001.ridx (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g4_0001.ticd/g4_0001_s0001.tisd/g4_0001_s0001.tdat (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g4_0001.ticd/g4_0001_s0001.tisd/g4_0001_s0001.tidx (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g4_0001.ticd/g4_0001_s0001.tisd/g4_0001_s0001.tmet (100%) rename {test.medd => 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ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g5_0002.ticd/g5_0002_s0001.tisd/g5_0002_s0001.tdat (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g5_0002.ticd/g5_0002_s0001.tisd/g5_0002_s0001.tidx (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/g5_0002.ticd/g5_0002_s0001.tisd/g5_0002_s0001.tmet (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/test.rdat (100%) rename {test.medd => ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd}/test.ridx (100%) create mode 100644 ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv create mode 100644 ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json create mode 100644 ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.nii.gz create mode 100644 ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv diff --git a/ieeg_MED/README b/ieeg_MED/README new file mode 100644 index 000000000..1455e71e0 --- /dev/null +++ b/ieeg_MED/README @@ -0,0 +1,4 @@ +Dataset description +=================== + +Example dataset demonstrating the [MED Format](https://medformat.org) diff --git a/ieeg_MED/dataset_description.json b/ieeg_MED/dataset_description.json new file mode 100644 index 000000000..e8f99173e --- /dev/null +++ b/ieeg_MED/dataset_description.json @@ -0,0 +1,20 @@ +{ + "Name": "Brainstorm epileptogenicity tutorial", + "BIDSVersion": "1.7.0", + "License": "This tutorial dataset (EEG and MRI data) remains property of the Grenoble University Hospital, France. Its use and transfer outside the ImaGIN tutorial, e.g. for research purposes, is prohibited without written consent. For questions, please contact Olivier David, PhD (olivier.david@inserm.fr).", + "Authors": [ + "Olivier David", + "Thomas Blauwblomme", + "Anne-Sophie Job", + "Stephan Chabardès", + "Dominique Hoffmann", + "Lorella Minotti", + "Philippe Kahane" + ], + "ReferencesAndLinks": [ + "David O, Blauwblomme T, Job AS, Chabardès S, Hoffmann D, Minotti L, Kahane P, Imaging the seizure onset zone with stereo-electroencephalography, Brain. 2011 Oct;134(10):2898-911", + "Lamarche F, Job AS, Deman P, Bhattacharjee M, Hoffmann D, Gallazzini-Crépin C, Bouvard S, Minotti L, Kahane P, David O, Correlation of FDG-PET hypometabolism and SEEG epileptogenicity mapping in patients with drug-resistant focal epilepsy, Epilepsia. 2016 Dec; 57(12):2045–2055", + "https://neuroimage.usc.edu/brainstorm/Tutorials/Epileptogenicity", + "https://f-tract.eu/tutorials/" + ] +} \ No newline at end of file diff --git a/ieeg_MED/participants.json b/ieeg_MED/participants.json new file mode 100644 index 000000000..543dff568 --- /dev/null +++ b/ieeg_MED/participants.json @@ -0,0 +1,15 @@ +{ + "age": { + "LongName": "age", + "Description": "age of the participant", + "Units": "years" + }, + "sex": { + "LongName": "sex", + "Description": "sex of the participant", + "Levels": { + "m": "male", + "f": "female" + } + } +} \ No newline at end of file diff --git a/ieeg_MED/participants.tsv b/ieeg_MED/participants.tsv new file mode 100644 index 000000000..a6a9ed477 --- /dev/null +++ b/ieeg_MED/participants.tsv @@ -0,0 +1,2 @@ +participant_id age sex +sub-01 n/a m diff --git a/ieeg_MED/sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz b/ieeg_MED/sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz new file mode 100644 index 000000000..e69de29bb diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json new file mode 100644 index 000000000..7e2e41447 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json @@ -0,0 +1,7 @@ +{ + "iEEGCoordinateSystem": "IXI549Space", + "iEEGCoordinateUnits": "mm", + "iEEGCoordinateProcessingDescription": "SEEG contacts manually placed with IntrAnat on the post-implantation T1w MRI, registered on the pre-implantation T1w, and normalized to IXI549Space with SPM12", + "iEEGCoordinateProcessingReference": "Deman, P., Bhattacharjee, M., Tadel, F., Job, A. S., Rivière, D., Cointepas, Y., Kahane, P., … David, O. (2018). IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed for Case and Group Studies. Frontiers in neuroinformatics, 12, 40. doi:10.3389/fninf.2018.00040", + "IntendedFor": "sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz" +} diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv new file mode 100644 index 000000000..505723658 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv @@ -0,0 +1,125 @@ +name x y z size hemisphere group type manufacturer +v'1 -2.142773 -38.682196 29.607849 5 L v' depth DIXI +v'2 -5.780327 -38.508810 29.615667 5 L v' depth DIXI +v'3 -9.424170 -38.327154 29.617274 5 L v' depth DIXI +v'4 -13.085162 -38.201440 29.737389 5 L v' depth DIXI +v'12 -42.867225 -37.987649 31.423371 5 L v' depth DIXI +v'13 -46.706554 -38.042728 31.546932 5 L v' depth DIXI +v'14 -50.542716 -38.146570 31.587165 5 L v' depth DIXI +v'15 -54.334033 -38.261455 31.585984 5 L v' depth DIXI +y'1 -33.025540 -1.252980 -7.783847 5 L y' depth DIXI +y'2 -32.750495 -3.502531 -4.431253 5 L y' depth DIXI +y'3 -32.456122 -5.760685 -1.115406 5 L y' depth DIXI +y'4 -32.245241 -8.014321 2.105200 5 L y' depth DIXI +y'5 -32.074522 -10.254071 5.316606 5 L y' depth DIXI +y'6 -31.822629 -12.486407 8.532736 5 L y' depth DIXI +y'7 -31.545732 -14.705389 11.727607 5 L y' depth DIXI +y'8 -31.200463 -16.906653 14.948259 5 L y' depth DIXI +y'9 -30.755714 -19.100763 18.214311 5 L y' depth DIXI +y'16 -27.271179 -34.686096 41.592751 5 L y' depth DIXI +y'17 -26.901452 -36.948599 45.168776 5 L y' depth DIXI +y'18 -26.652344 -39.195087 48.759740 5 L y' depth DIXI +t'1 -36.477081 -12.130454 -5.542343 5 L t' depth DIXI +t'2 -40.490739 -11.987153 -5.788616 5 L t' depth DIXI +t'3 -44.478796 -11.912610 -6.182991 5 L t' depth DIXI +t'4 -48.495460 -11.858580 -6.667650 5 L t' depth DIXI +t'5 -52.414682 -11.684004 -6.994740 5 L t' depth DIXI +t'6 -56.305639 -11.417642 -7.070488 5 L t' depth DIXI +t'7 -60.219873 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"SEEG contacts manually placed with IntrAnat on the post-implantation T1w MRI, which was registered on the pre-implantation T1w", + "iEEGCoordinateProcessingReference": "Deman, P., Bhattacharjee, M., Tadel, F., Job, A. S., Rivière, D., Cointepas, Y., Kahane, P., … David, O. (2018). IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed for Case and Group Studies. Frontiers in neuroinformatics, 12, 40. doi:10.3389/fninf.2018.00040", + "IntendedFor": "sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz" +} diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv new file mode 100644 index 000000000..e0b477836 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv @@ -0,0 +1,125 @@ +name x y z size hemisphere group type manufacturer +v'1 -1.224935 -30.186168 28.827099 5 L v' depth DIXI +v'2 -4.723552 -30.256567 28.895778 5 L v' depth DIXI +v'3 -8.222170 -30.326966 28.964457 5 L v' depth DIXI +v'4 -11.720788 -30.397365 29.033136 5 L v' depth DIXI +v'12 -39.709731 -30.960556 29.582568 5 L v' depth DIXI +v'13 -43.208349 -31.030955 29.651247 5 L v' depth DIXI +v'14 -46.706967 -31.101354 29.719926 5 L v' depth DIXI +v'15 -50.205585 -31.171753 29.788605 5 L v' depth DIXI +y'1 -29.245744 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-9.874869 5 L g' depth DIXI +g'2 -17.755847 -49.639966 -9.821031 5 L g' depth DIXI +g'3 -21.254662 -49.566527 -9.767193 5 L g' depth DIXI +g'4 -24.753478 -49.493087 -9.713356 5 L g' depth DIXI +g'5 -28.252293 -49.419647 -9.659518 5 L g' depth DIXI +g'6 -31.751108 -49.346208 -9.605681 5 L g' depth DIXI +g'7 -35.249923 -49.272768 -9.551843 5 L g' depth DIXI +g'8 -38.748739 -49.199329 -9.498005 5 L g' depth DIXI +g'9 -42.247554 -49.125889 -9.444168 5 L g' depth DIXI +g'10 -45.746369 -49.052449 -9.390330 5 L g' depth DIXI +g'11 -49.245184 -48.979010 -9.336493 5 L g' depth DIXI +g'12 -52.744000 -48.905570 -9.282655 5 L g' depth DIXI +o'1 -4.031074 -58.475965 -0.783845 5 L o' depth DIXI +o'2 -7.529644 -58.403395 -0.714995 5 L o' depth DIXI +o'5 -18.025354 -58.185687 -0.508445 5 L o' depth DIXI +o'6 -21.523925 -58.113118 -0.439595 5 L o' depth DIXI +o'10 -35.518205 -57.822840 -0.164194 5 L o' depth DIXI +o'11 -39.016775 -57.750270 -0.095344 5 L o' depth DIXI +o'12 -42.515346 -57.677701 -0.026493 5 L o' depth DIXI +s'1 -3.551556 -54.010644 8.480628 5 L s' depth DIXI +s'2 -7.048585 -54.025869 8.624006 5 L s' depth DIXI +s'3 -10.545614 -54.041094 8.767384 5 L s' depth DIXI +s'10 -35.024816 -54.147670 9.771032 5 L s' depth DIXI +s'11 -38.521845 -54.162895 9.914410 5 L s' depth DIXI +s'12 -42.018873 -54.178120 10.057788 5 L s' depth DIXI diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv new file mode 100644 index 000000000..1311544ef --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv @@ -0,0 +1,129 @@ +name type units low_cutoff high_cutoff sampling_frequency reference group status +v'1 SEEG uV n/a n/a 512 intracranial v' bad +v'2 SEEG uV n/a n/a 512 intracranial v' good +v'3 SEEG uV n/a n/a 512 intracranial v' good +v'4 SEEG uV n/a n/a 512 intracranial v' good +v'12 SEEG uV n/a n/a 512 intracranial v' good +v'13 SEEG uV n/a n/a 512 intracranial v' good +v'14 SEEG uV n/a n/a 512 intracranial v' good +v'15 SEEG uV n/a n/a 512 intracranial v' good +y'1 SEEG uV n/a n/a 512 intracranial y' good +y'2 SEEG uV n/a n/a 512 intracranial y' good +y'3 SEEG uV n/a n/a 512 intracranial y' good +y'4 SEEG uV n/a n/a 512 intracranial y' good +y'5 SEEG uV n/a n/a 512 intracranial y' good +y'6 SEEG uV n/a n/a 512 intracranial y' good +y'7 SEEG uV n/a n/a 512 intracranial y' good +y'8 SEEG uV n/a n/a 512 intracranial y' good +y'9 SEEG uV n/a n/a 512 intracranial y' good +y'16 SEEG uV n/a n/a 512 intracranial y' good +y'17 SEEG uV n/a n/a 512 intracranial y' good +y'18 SEEG uV n/a n/a 512 intracranial y' good +t'1 SEEG uV n/a n/a 512 intracranial t' good +t'2 SEEG uV n/a n/a 512 intracranial t' good +t'3 SEEG uV n/a n/a 512 intracranial t' good +t'4 SEEG uV n/a n/a 512 intracranial t' good +t'5 SEEG uV n/a n/a 512 intracranial t' good +t'6 SEEG uV n/a n/a 512 intracranial t' good +t'7 SEEG uV n/a n/a 512 intracranial t' good +t'8 SEEG uV n/a n/a 512 intracranial t' good +u'1 SEEG uV n/a n/a 512 intracranial u' good +u'2 SEEG uV n/a n/a 512 intracranial u' good +u'3 SEEG uV n/a n/a 512 intracranial u' good +u'5 SEEG uV n/a n/a 512 intracranial u' good +u'6 SEEG uV n/a n/a 512 intracranial u' good +u'7 SEEG uV n/a n/a 512 intracranial u' good +u'8 SEEG uV n/a n/a 512 intracranial u' good +et'1 SEEG uV n/a n/a 512 intracranial et' good +et'2 SEEG uV n/a n/a 512 intracranial et' good +et'3 SEEG uV n/a n/a 512 intracranial et' good +et'6 SEEG uV n/a n/a 512 intracranial et' good +et'7 SEEG uV n/a n/a 512 intracranial et' good +et'8 SEEG uV n/a n/a 512 intracranial et' good +et'9 SEEG uV n/a n/a 512 intracranial et' good +b'1 SEEG uV n/a n/a 512 intracranial b' good +b'2 SEEG uV n/a n/a 512 intracranial b' good +b'3 SEEG uV n/a n/a 512 intracranial b' good +b'4 SEEG uV n/a n/a 512 intracranial b' good +b'5 SEEG uV n/a n/a 512 intracranial b' good +b'10 SEEG uV n/a n/a 512 intracranial b' good +b'11 SEEG uV n/a n/a 512 intracranial b' good +b'12 SEEG uV n/a n/a 512 intracranial b' good +c'1 SEEG uV n/a n/a 512 intracranial c' good +c'2 SEEG uV n/a n/a 512 intracranial c' good +c'3 SEEG uV n/a n/a 512 intracranial c' good +c'9 SEEG uV n/a n/a 512 intracranial c' good +c'10 SEEG uV n/a n/a 512 intracranial c' good +c'11 SEEG uV n/a n/a 512 intracranial c' good +c'12 SEEG uV n/a n/a 512 intracranial c' good +d'7 SEEG uV n/a n/a 512 intracranial d' good +d'8 SEEG uV n/a n/a 512 intracranial d' good +d'9 SEEG uV n/a n/a 512 intracranial d' good +d'10 SEEG uV n/a n/a 512 intracranial d' good +d'11 SEEG uV n/a n/a 512 intracranial d' good +x'1 SEEG uV n/a n/a 512 intracranial x' good +x'2 SEEG uV n/a n/a 512 intracranial x' good +x'3 SEEG uV n/a n/a 512 intracranial x' good +x'6 SEEG uV n/a n/a 512 intracranial x' good +x'7 SEEG uV n/a n/a 512 intracranial x' good +x'8 SEEG uV n/a n/a 512 intracranial x' good +x'9 SEEG uV n/a n/a 512 intracranial x' good +x'12 SEEG uV n/a n/a 512 intracranial x' good +x'13 SEEG uV n/a n/a 512 intracranial x' good +x'14 SEEG uV n/a n/a 512 intracranial x' good +e'1 SEEG uV n/a n/a 512 intracranial e' good +e'2 SEEG uV n/a n/a 512 intracranial e' good +e'3 SEEG uV n/a n/a 512 intracranial e' good +e'4 SEEG uV n/a n/a 512 intracranial e' good +e'5 SEEG uV n/a n/a 512 intracranial e' good +e'8 SEEG uV n/a n/a 512 intracranial e' good +e'9 SEEG uV n/a n/a 512 intracranial e' good +e'10 SEEG uV n/a n/a 512 intracranial e' good +e'11 SEEG uV n/a n/a 512 intracranial e' good +l'1 SEEG uV n/a n/a 512 intracranial l' good +l'2 SEEG uV n/a n/a 512 intracranial l' good +l'3 SEEG uV n/a n/a 512 intracranial l' good +l'4 SEEG uV n/a n/a 512 intracranial l' good +l'5 SEEG uV n/a n/a 512 intracranial l' good +l'6 SEEG uV n/a n/a 512 intracranial l' good +l'7 SEEG uV n/a n/a 512 intracranial l' good +l'8 SEEG uV n/a n/a 512 intracranial l' good +l'9 SEEG uV n/a n/a 512 intracranial l' good +f'1 SEEG uV n/a n/a 512 intracranial f' bad +f'2 SEEG uV n/a n/a 512 intracranial f' good +f'3 SEEG uV n/a n/a 512 intracranial f' good +f'4 SEEG uV n/a n/a 512 intracranial f' good +f'8 SEEG uV n/a n/a 512 intracranial f' good +f'9 SEEG uV n/a n/a 512 intracranial f' good +f'10 SEEG uV n/a n/a 512 intracranial f' good +f'11 SEEG uV n/a n/a 512 intracranial f' good +f'12 SEEG uV n/a n/a 512 intracranial f' good +g'1 SEEG uV n/a n/a 512 intracranial g' good +g'2 SEEG uV n/a n/a 512 intracranial g' good +g'3 SEEG uV n/a n/a 512 intracranial g' good +g'4 SEEG uV n/a n/a 512 intracranial g' good +g'5 SEEG uV n/a n/a 512 intracranial g' good +g'6 SEEG uV n/a n/a 512 intracranial g' good +g'7 SEEG uV n/a n/a 512 intracranial g' good +g'8 SEEG uV n/a n/a 512 intracranial g' good +g'9 SEEG uV n/a n/a 512 intracranial g' good +g'10 SEEG uV n/a n/a 512 intracranial g' good +g'11 SEEG uV n/a n/a 512 intracranial g' good +g'12 SEEG uV n/a n/a 512 intracranial g' good +o'1 SEEG uV n/a n/a 512 intracranial o' good +o'2 SEEG uV n/a n/a 512 intracranial o' good +o'5 SEEG uV n/a n/a 512 intracranial o' good +o'6 SEEG uV n/a n/a 512 intracranial o' good +o'10 SEEG uV n/a n/a 512 intracranial o' good +o'11 SEEG uV n/a n/a 512 intracranial o' good +o'12 SEEG uV n/a n/a 512 intracranial o' good +s'1 SEEG uV n/a n/a 512 intracranial s' good +s'2 SEEG uV n/a n/a 512 intracranial s' good +s'3 SEEG uV n/a n/a 512 intracranial s' good +s'10 SEEG uV n/a n/a 512 intracranial s' good +s'11 SEEG uV n/a n/a 512 intracranial s' good +s'12 SEEG uV n/a n/a 512 intracranial s' good +fz EEG uV n/a n/a 512 unknown n/a good +cz EEG uV n/a n/a 512 unknown n/a good +ecg1 ECG uV n/a n/a 512 unknown n/a good +ecg2 ECG uV n/a n/a 512 unknown n/a good diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv new file mode 100644 index 000000000..47c5aae5d --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv @@ -0,0 +1,2 @@ +onset duration trial_type +120.369 0 Seizure diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json new file mode 100644 index 000000000..77d5cc1b4 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json @@ -0,0 +1,30 @@ +{ + "TaskName": "seizure", + "SamplingFrequency": 512, + "PowerLineFrequency": 50, + "SoftwareFilters": "n/a", + "HardwareFilters": "n/a", + "Manufacturer": "Micromed", + "ManufacturersModelName": "Unknown", + "TaskDescription": "Spontaneous seizure, focal epilepsy of the left temporo-occipital junction", + "Instructions": "n/a", + "InstitutionName": "Grenoble Institut des Neurosciences / CHU Grenoble Alpes", + "InstitutionAddress": "Chemin Fortuné Ferrini, 38700 La Tronche, France", + "ECOGChannelCount": 0, + "SEEGChannelCount": 124, + "EEGChannelCount": 2, + "EOGChannelCount": 0, + "ECGChannelCount": 2, + "EMGChannelCount": 0, + "MiscChannelCount": 0, + "TriggerChannelCount": 0, + "RecordingDuration": 255.920, + "RecordingType": "continuous", + "SoftwareVersions": "Unknown", + "iEEGPlacementScheme": "depth electrodes around the seizure onset zone", + "iEEGReference": "intracranial channel not included with data", + "ElectrodeManufacturer": "DIXI", + "ElectrodeManufacturersModelName": "D08-**AM Microdeep electrodes", + "iEEGGround": "unknown", + "ElectricalStimulation": false +} diff --git a/test.medd/g1_0001.ticd/g1_0001.rdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001.rdat similarity index 100% rename from test.medd/g1_0001.ticd/g1_0001.rdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001.rdat diff --git a/test.medd/g1_0001.ticd/g1_0001.ridx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001.ridx similarity index 100% rename from test.medd/g1_0001.ticd/g1_0001.ridx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001.ridx diff --git a/test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tdat similarity index 100% rename from test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tdat diff --git a/test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tidx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tidx similarity index 100% rename from test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tidx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tidx diff --git a/test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tmet b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tmet similarity index 100% rename from test.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tmet rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001_s0001.tisd/g1_0001_s0001.tmet diff --git a/test.medd/g1_0002.ticd/g1_0002.rdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002.rdat similarity index 100% rename from test.medd/g1_0002.ticd/g1_0002.rdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002.rdat diff --git a/test.medd/g1_0002.ticd/g1_0002.ridx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002.ridx similarity index 100% rename from test.medd/g1_0002.ticd/g1_0002.ridx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002.ridx diff --git a/test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tdat similarity index 100% rename from test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tdat diff --git a/test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tidx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tidx similarity index 100% rename from test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tidx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tidx diff --git a/test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tmet b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tmet similarity index 100% rename from test.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tmet rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0002.ticd/g1_0002_s0001.tisd/g1_0002_s0001.tmet diff --git a/test.medd/g2_0001.ticd/g2_0001.rdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001.rdat similarity index 100% rename from test.medd/g2_0001.ticd/g2_0001.rdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001.rdat diff --git a/test.medd/g2_0001.ticd/g2_0001.ridx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001.ridx similarity index 100% rename from test.medd/g2_0001.ticd/g2_0001.ridx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001.ridx diff --git a/test.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tdat similarity index 100% rename from test.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tdat diff --git a/test.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tidx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tidx similarity index 100% rename from test.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tidx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tidx diff --git a/test.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tmet b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tmet similarity index 100% rename from test.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tmet rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0001.ticd/g2_0001_s0001.tisd/g2_0001_s0001.tmet diff --git a/test.medd/g2_0002.ticd/g2_0002.rdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0002.ticd/g2_0002.rdat similarity index 100% rename from test.medd/g2_0002.ticd/g2_0002.rdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0002.ticd/g2_0002.rdat diff --git a/test.medd/g2_0002.ticd/g2_0002.ridx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0002.ticd/g2_0002.ridx similarity index 100% rename from test.medd/g2_0002.ticd/g2_0002.ridx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0002.ticd/g2_0002.ridx diff --git a/test.medd/g2_0002.ticd/g2_0002_s0001.tisd/g2_0002_s0001.tdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g2_0002.ticd/g2_0002_s0001.tisd/g2_0002_s0001.tdat similarity index 100% rename from test.medd/g2_0002.ticd/g2_0002_s0001.tisd/g2_0002_s0001.tdat rename to 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diff --git a/test.medd/g4_0002.ticd/g4_0002.ridx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g4_0002.ticd/g4_0002.ridx similarity index 100% rename from test.medd/g4_0002.ticd/g4_0002.ridx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g4_0002.ticd/g4_0002.ridx diff --git a/test.medd/g4_0002.ticd/g4_0002_s0001.tisd/g4_0002_s0001.tdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g4_0002.ticd/g4_0002_s0001.tisd/g4_0002_s0001.tdat similarity index 100% rename from test.medd/g4_0002.ticd/g4_0002_s0001.tisd/g4_0002_s0001.tdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g4_0002.ticd/g4_0002_s0001.tisd/g4_0002_s0001.tdat diff --git a/test.medd/g4_0002.ticd/g4_0002_s0001.tisd/g4_0002_s0001.tidx 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ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g5_0002.ticd/g5_0002_s0001.tisd/g5_0002_s0001.tmet diff --git a/test.medd/test.rdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/test.rdat similarity index 100% rename from test.medd/test.rdat rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/test.rdat diff --git a/test.medd/test.ridx b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/test.ridx similarity index 100% rename from test.medd/test.ridx rename to ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/test.ridx diff --git a/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv new file mode 100644 index 000000000..ac8477b23 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv @@ -0,0 +1,5 @@ +filename acq_time +anat/sub-01_ses-postimp_T1w.nii.gz 1900-01-01T00:00:00 +ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.eeg 1900-01-01T00:00:00 +ieeg/sub-01_ses-postimp_task-seizure_run-02_ieeg.eeg 1900-01-01T00:00:00 +ieeg/sub-01_ses-postimp_task-seizure_run-03_ieeg.eeg 1900-01-01T00:00:00 diff --git a/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json b/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json new file mode 100644 index 000000000..74bfff47a --- /dev/null +++ b/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json @@ -0,0 +1,34 @@ +{ + "AnatomicalLandmarkCoordinates": { + "NAS": [ + 129, + 214, + 67 + ], + "LPA": [ + 203, + 110, + 42 + ], + "RPA": [ + 53, + 116, + 41 + ], + "AC": [ + 128, + 130, + 83 + ], + "PC": [ + 128, + 103, + 80 + ], + "IH": [ + 128, + 114, + 135 + ] + } +} diff --git a/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.nii.gz b/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.nii.gz new file mode 100644 index 000000000..e69de29bb diff --git a/ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv b/ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv new file mode 100644 index 000000000..e6075808b --- /dev/null +++ b/ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv @@ -0,0 +1,2 @@ +filename acq_time +anat/sub-01_ses-preimp_T1w.nii.gz 1900-01-01T00:00:00 \ No newline at end of file From 0087b85bbf1817cba5651d0449a8132319c27eac Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Oct 2024 09:34:38 -0400 Subject: [PATCH 3/8] Update scans.tsv --- ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv index ac8477b23..24bddcae8 100644 --- a/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv +++ b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv @@ -1,5 +1,3 @@ filename acq_time anat/sub-01_ses-postimp_T1w.nii.gz 1900-01-01T00:00:00 -ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.eeg 1900-01-01T00:00:00 -ieeg/sub-01_ses-postimp_task-seizure_run-02_ieeg.eeg 1900-01-01T00:00:00 -ieeg/sub-01_ses-postimp_task-seizure_run-03_ieeg.eeg 1900-01-01T00:00:00 +ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.hedd 1900-01-01T00:00:00 From 893fc5acb809bc4d48343ff6bcb6d9b501acfb1c Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Oct 2024 09:34:55 -0400 Subject: [PATCH 4/8] Skip legacy validation --- .github/workflows/validate_datasets.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/validate_datasets.yml b/.github/workflows/validate_datasets.yml index ba405411f..f1fb1cd7d 100644 --- a/.github/workflows/validate_datasets.yml +++ b/.github/workflows/validate_datasets.yml @@ -99,7 +99,7 @@ jobs: shell: bash - name: Skip MRS validation for legacy validator - run: for DS in mrs_*; do touch $DS/.SKIP_VALIDATION; done + run: for DS in mrs_* ieeg_MED; do touch $DS/.SKIP_VALIDATION; done if: "matrix.bids-validator != 'master-deno'" shell: bash From 969bb2d97ce4f4fb586ca6a2b594c010f90821aa Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Oct 2024 09:35:47 -0400 Subject: [PATCH 5/8] Import schema from branch that introduces MED format --- .github/workflows/validate_datasets.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/validate_datasets.yml b/.github/workflows/validate_datasets.yml index f1fb1cd7d..1381157b1 100644 --- a/.github/workflows/validate_datasets.yml +++ b/.github/workflows/validate_datasets.yml @@ -111,4 +111,4 @@ jobs: env: # When proposing new features, schema changes may be necessary. # Update this URL to the schema.json from PRs to the spec, when needed. - BIDS_SCHEMA: https://bids-specification.readthedocs.io/en/latest/schema.json + BIDS_SCHEMA: https://bids-specification--1956.org.readthedocs.build/en/1956/schema.json From abd0ea55665d7e762533b3b9632cbfee458aa6db Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Oct 2024 09:39:31 -0400 Subject: [PATCH 6/8] Typo in scans.tsv --- ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv index 24bddcae8..91d98fdf4 100644 --- a/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv +++ b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv @@ -1,3 +1,3 @@ filename acq_time anat/sub-01_ses-postimp_T1w.nii.gz 1900-01-01T00:00:00 -ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.hedd 1900-01-01T00:00:00 +ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd 1900-01-01T00:00:00 From f553de5dcd93bcad86b7aae48207961ab19800e2 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Tue, 5 Nov 2024 08:06:58 -0500 Subject: [PATCH 7/8] Update .github/workflows/validate_datasets.yml --- .github/workflows/validate_datasets.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/validate_datasets.yml b/.github/workflows/validate_datasets.yml index 14cac503e..065e29e5e 100644 --- a/.github/workflows/validate_datasets.yml +++ b/.github/workflows/validate_datasets.yml @@ -111,4 +111,4 @@ jobs: env: # When proposing new features, schema changes may be necessary. # Update this URL to the schema.json from PRs to the spec, when needed. - BIDS_SCHEMA: https://bids-specification--1956.org.readthedocs.build/en/1956/schema.json + BIDS_SCHEMA: https://bids-specification.readthedocs/en/latest/schema.json From 98bad61e754178e93d8cb3b4af9f03cbe21db78a Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Tue, 5 Nov 2024 09:36:37 -0500 Subject: [PATCH 8/8] Update .github/workflows/validate_datasets.yml --- .github/workflows/validate_datasets.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/validate_datasets.yml b/.github/workflows/validate_datasets.yml index 45b40a347..44dba5cc0 100644 --- a/.github/workflows/validate_datasets.yml +++ b/.github/workflows/validate_datasets.yml @@ -100,4 +100,4 @@ jobs: env: # When proposing new features, schema changes may be necessary. # Update this URL to the schema.json from PRs to the spec, when needed. - BIDS_SCHEMA: https://bids-specification.readthedocs/en/latest/schema.json + BIDS_SCHEMA: https://bids-specification.readthedocs.io/en/latest/schema.json