Add .json sidecars to the mrs_fmrs/ subjects' datasets

mrs_fmrs/dataset_description.json

@@ -8,10 +8,11 @@
         "Erin MacMillan",
         "John Kramer"
     ],
-    "HowToAcknowledge": "Please cite the following publication if you use the fMRS in pain dataset: Archibald J., MacMillan EL., Graf C., Kozlowski P., Laule C., Kramer J.L.K. ''Metabolite activity in the anterior cingulate cortex during a painful stimulus using functional MRS''. Sci Reports 2020",
+    "HowToAcknowledge": "Please cite the following publication if you use the fMRS in pain dataset: Archibald J., MacMillan EL., Graf C., Kozlowski P., Laule C., Kramer J.L.K. 'Metabolite activity in the anterior cingulate cortex during a painful stimulus using functional MRS'. Sci Reports 2020",
     "ReferencesAndLinks": [
         "doi:10.1038/s41598-020-76263-3"
     ],
+    "DatasetDOI": "doi:10.25790/bml0cm.159",
     "SourceDatasets": [
         {
             "URL": "https://www.nitrc.org/projects/fmrs_2020/"

mrs_fmrs/sub-01/anat/sub-01_T1w.json

@@ -0,0 +1,13 @@
+{
+	"Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+	"PulseSequenceType": "MPRAGE",
+	"MRAcquisitionType": "3D",
+	"EchoTime": 0.0035,
+	"InversionTime": 0.808,
+	"RepetitionTimeExcitation": 0.0077,
+	"AcquisitionVoxelSize": [1, 1, 1],
+	"BodyPart": "BRAIN"
+}

mrs_fmrs/sub-01/mrs/sub-01_task-baseline_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-01/anat/sub-01_T1w.nii.gz"
+}

mrs_fmrs/sub-01/mrs/sub-01_task-baseline_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 32,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-01/mrs/sub-01_task-baseline_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-01/anat/sub-01_T1w.nii.gz"
+}

mrs_fmrs/sub-01/mrs/sub-01_task-pain_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-01/anat/sub-01_T1w.nii.gz"
+}

mrs_fmrs/sub-01/mrs/sub-01_task-pain_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 320,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-01/mrs/sub-01_task-pain_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-01/anat/sub-01_T1w.nii.gz"
+}

mrs_fmrs/sub-02/anat/sub-02_T1w.json

@@ -0,0 +1,13 @@
+{
+	"Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+	"PulseSequenceType": "MPRAGE",
+	"MRAcquisitionType": "3D",
+	"EchoTime": 0.0035,
+	"InversionTime": 0.808,
+	"RepetitionTimeExcitation": 0.0077,
+	"AcquisitionVoxelSize": [1, 1, 1],
+	"BodyPart": "BRAIN"
+}

mrs_fmrs/sub-02/mrs/sub-02_task-baseline_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-02/anat/sub-02_T1w.nii.gz"
+}

mrs_fmrs/sub-02/mrs/sub-02_task-baseline_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 32,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-02/mrs/sub-02_task-baseline_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-02/anat/sub-02_T1w.nii.gz"
+}

mrs_fmrs/sub-02/mrs/sub-02_task-pain_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-02/anat/sub-02_T1w.nii.gz"
+}

mrs_fmrs/sub-02/mrs/sub-02_task-pain_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 320,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-02/mrs/sub-02_task-pain_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-02/anat/sub-02_T1w.nii.gz"
+}

mrs_fmrs/sub-03/anat/sub-03_T1w.json

@@ -0,0 +1,13 @@
+{
+	"Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+	"PulseSequenceType": "MPRAGE",
+	"MRAcquisitionType": "3D",
+	"EchoTime": 0.0035,
+	"InversionTime": 0.808,
+	"RepetitionTimeExcitation": 0.0077,
+	"AcquisitionVoxelSize": [1, 1, 1],
+	"BodyPart": "BRAIN"
+}

mrs_fmrs/sub-03/mrs/sub-03_task-baseline_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-03/anat/sub-03_T1w.nii.gz"
+}

mrs_fmrs/sub-03/mrs/sub-03_task-baseline_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 32,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-03/mrs/sub-03_task-baseline_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-03/anat/sub-03_T1w.nii.gz"
+}

mrs_fmrs/sub-03/mrs/sub-03_task-pain_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-03/anat/sub-03_T1w.nii.gz"
+}

mrs_fmrs/sub-03/mrs/sub-03_task-pain_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 320,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-03/mrs/sub-03_task-pain_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-03/anat/sub-03_T1w.nii.gz"
+}

mrs_fmrs/sub-04/anat/sub-04_T1w.json

@@ -0,0 +1,13 @@
+{
+	"Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+	"PulseSequenceType": "MPRAGE",
+	"MRAcquisitionType": "3D",
+	"EchoTime": 0.0035,
+	"InversionTime": 0.808,
+	"RepetitionTimeExcitation": 0.0077,
+	"AcquisitionVoxelSize": [1, 1, 1],
+	"BodyPart": "BRAIN"
+}

mrs_fmrs/sub-04/mrs/sub-04_task-baseline_mrsref.json

@@ -0,0 +1,21 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": false,
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 16,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "AnatomicalImage": "bids::sub-04/anat/sub-04_T1w.nii.gz"
+}

mrs_fmrs/sub-04/mrs/sub-04_task-baseline_svs.json

@@ -0,0 +1,23 @@
+{
+    "Manufacturer": "Philips",
+	"ManufacturersModelName": "Achieva",
+	"MagneticFieldStrength": 3,
+	"InstitutionName": "University of British Columbia",
+    "PulseSequenceType": "PRESS",
+    "ScanningSequence": "SVS",
+    "WaterSuppression": true,
+    "WaterSuppressionTechnique": "Excitation",
+    "B0ShimmingTechnique": "Second-order",
+    "BodyPart": "BRAIN",
+    "BodyPartDetails": "Anterior cingulate cortex",
+    "ResonantNucleus": ["1H"],
+    "SpectrometerFrequency": [127.7],
+    "SpectralWidth": 2000,
+    "EchoTime": 0.022,
+    "NumberOfTransients": 32,
+    "NumberOfSpectralPoints": 2048,
+    "RepetitionTime": 4,
+    "AcquisitionVoxelSize": [30, 25, 15],
+    "ReferenceSignal": "bids::sub-04/mrs/sub-04_task-baseline_mrsref.nii.gz",
+    "AnatomicalImage": "bids::sub-04/anat/sub-04_T1w.nii.gz"
+}