From 01241e57ab31734d54be9ff80b450814c6ac1358 Mon Sep 17 00:00:00 2001 From: Tal Pal Attia Date: Tue, 8 Aug 2023 14:42:19 -0500 Subject: [PATCH] Updated example to use score_1.1.1 Updated example to use the HED-SCORE schema with score_1.1.1 - changed specified HEDVersion in dataset_description.json - changed event annotations to match labels used for annotating the Temple University Hospital EEG Corpus (TUEG) and their corresponding SCORE HED library schema annotations. --- xeeg_hed_score/dataset_description.json | 2 +- ...ctTUH_ses-eeg01_task-rest_run-000_events.json | 2 +- ...ctTUH_ses-eeg01_task-rest_run-001_events.json | 2 +- ...ctTUH_ses-eeg01_task-rest_run-002_events.json | 2 +- ...ureTUH_ses-eeg01_task-rest_run-002_events.tsv | 10 +++++----- ...ureTUH_ses-eeg01_task-rest_run-003_events.tsv | 16 ++++++++-------- ...ureTUH_ses-eeg01_task-rest_run-004_events.tsv | 8 ++++---- 7 files changed, 21 insertions(+), 21 deletions(-) diff --git a/xeeg_hed_score/dataset_description.json b/xeeg_hed_score/dataset_description.json index b14f9715e..d221d1cae 100755 --- a/xeeg_hed_score/dataset_description.json +++ b/xeeg_hed_score/dataset_description.json @@ -1,7 +1,7 @@ { "Name": "HED schema library for SCORE annotations example", "BIDSVersion": "1.7.0", - "HEDVersion": "score_1.1.0", + "HEDVersion": "score_1.1.1", "Authors": [ "Tal Pal Attia", "Dora Hermes" diff --git a/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-000_events.json b/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-000_events.json index 92e0f2602..7a1cdd00c 100755 --- a/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-000_events.json +++ b/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-000_events.json @@ -16,7 +16,7 @@ }, "HED": { "eyem": "Eye-movement-horizontal-artifact", - "elec": "Electrode-pops-artifact", + "elec": "Non-biological-artifact", "musc": "EMG-artifact", "eyem+musc": "(Eye-movement-horizontal-artifact , EMG-artifact)" } diff --git a/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-001_events.json b/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-001_events.json index 61ef41636..96a8433e0 100755 --- a/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-001_events.json +++ b/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-001_events.json @@ -16,7 +16,7 @@ }, "HED": { "eyem": "Eye-movement-horizontal-artifact", - "elec": "Electrode-pops-artifact", + "elec": "Non-biological-artifact", "musc": "EMG-artifact", "eyem+musc": "(Eye-movement-horizontal-artifact , EMG-artifact)" } diff --git a/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-002_events.json b/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-002_events.json index 61ef41636..96a8433e0 100755 --- a/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-002_events.json +++ b/xeeg_hed_score/sub-eegArtifactTUH/ses-eeg01/eeg/sub-eegArtifactTUH_ses-eeg01_task-rest_run-002_events.json @@ -16,7 +16,7 @@ }, "HED": { "eyem": "Eye-movement-horizontal-artifact", - "elec": "Electrode-pops-artifact", + "elec": "Non-biological-artifact", "musc": "EMG-artifact", "eyem+musc": "(Eye-movement-horizontal-artifact , EMG-artifact)" } diff --git a/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-002_events.tsv b/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-002_events.tsv index 33650c674..39e34d2a1 100755 --- a/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-002_events.tsv +++ b/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-002_events.tsv @@ -1,6 +1,6 @@ onset duration HED_annotations channel -24.8325 102.2255 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure T3-T5,T5-O1,FP2-F8,T6-O2,A1-T3,T3-C3,C3-CZ,FP1-F3,F3-C3,C3-P3,P3-O1,FP2-F4 -13.8275 159.5516 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure F8-T4,T4-T6 -8.8275 118.1255 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure CZ-C4,F4-C4,C4-P4,P4-O2 -8.8275 164.3851 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure C4-T4 -24.8325 148.4851 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure T4-A2 \ No newline at end of file +24.8325 102.2255 Tonic-clonic-motor-onset-seizure T3-T5,T5-O1,FP2-F8,T6-O2,A1-T3,T3-C3,C3-CZ,FP1-F3,F3-C3,C3-P3,P3-O1,FP2-F4 +13.8275 159.5516 Tonic-clonic-motor-onset-seizure F8-T4,T4-T6 +8.8275 118.1255 Tonic-clonic-motor-onset-seizure CZ-C4,F4-C4,C4-P4,P4-O2 +8.8275 164.3851 Tonic-clonic-motor-onset-seizure C4-T4 +24.8325 148.4851 Tonic-clonic-motor-onset-seizure T4-A2 \ No newline at end of file diff --git a/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-003_events.tsv b/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-003_events.tsv index 47eb67c9a..68cb809c5 100755 --- a/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-003_events.tsv +++ b/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-003_events.tsv @@ -1,9 +1,9 @@ onset duration HED_annotations channel -14.034 101.027 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure FP2-F8,T6-O2,A1-T3,T3-C3,C3-CZ -14.034 160.7442 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure F8-T4,T4-T6 -7.9734 107.0876 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure CZ-C4 -3.9734 171.532 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure C4-T4,T4-A2 -21.2327 93.7906 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure FP1-F3,F3-C3,C3-P3,P3-O1,FP2-F4 -3.9623 111.0488 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure F4-C4 -13.9334 101.0766 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure C4-P4 -3.9789 111.0488 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure P4-O2 \ No newline at end of file +14.034 101.027 Tonic-clonic-motor-onset-seizure FP2-F8,T6-O2,A1-T3,T3-C3,C3-CZ +14.034 160.7442 Tonic-clonic-motor-onset-seizure F8-T4,T4-T6 +7.9734 107.0876 Tonic-clonic-motor-onset-seizure CZ-C4 +3.9734 171.532 Tonic-clonic-motor-onset-seizure C4-T4,T4-A2 +21.2327 93.7906 Tonic-clonic-motor-onset-seizure FP1-F3,F3-C3,C3-P3,P3-O1,FP2-F4 +3.9623 111.0488 Tonic-clonic-motor-onset-seizure F4-C4 +13.9334 101.0766 Tonic-clonic-motor-onset-seizure C4-P4 +3.9789 111.0488 Tonic-clonic-motor-onset-seizure P4-O2 \ No newline at end of file diff --git a/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-004_events.tsv b/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-004_events.tsv index 20dc95f09..a892c99ec 100755 --- a/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-004_events.tsv +++ b/xeeg_hed_score/sub-eegSeizureTUH/ses-eeg01/eeg/sub-eegSeizureTUH_ses-eeg01_task-rest_run-004_events.tsv @@ -1,5 +1,5 @@ onset duration HED_annotations channel -26.15 124.3657 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure FP2-F8,T6-O2,A1-T3,T3-C3,C3-CZ,FP2-F4 -1 149.5157 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure F8-T4,T4-T6,C4-T4,T4-A2 -20.95 129.5657 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure CZ-C4,F4-C4,C4-P4,P4-O2 -26.15 76.0424 Unknown-onset-epileptic-seizure, Tonic-clonic-motor-onset-seizure FP1-F3,F3-C3,C3-P3,P3-O1 \ No newline at end of file +26.15 124.3657 Tonic-clonic-motor-onset-seizure FP2-F8,T6-O2,A1-T3,T3-C3,C3-CZ,FP2-F4 +1 149.5157 Tonic-clonic-motor-onset-seizure F8-T4,T4-T6,C4-T4,T4-A2 +20.95 129.5657 Tonic-clonic-motor-onset-seizure CZ-C4,F4-C4,C4-P4,P4-O2 +26.15 76.0424 Tonic-clonic-motor-onset-seizure FP1-F3,F3-C3,C3-P3,P3-O1 \ No newline at end of file