From 2328c4dc96e3342ffec1d0db33f9ab66d82aab41 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Tue, 5 Sep 2023 11:26:38 +0100
Subject: [PATCH 01/19] Add github action for coverage

---
 .github/workflows/test-coverage.yaml | 50 ++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)
 create mode 100644 .github/workflows/test-coverage.yaml

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
new file mode 100644
index 0000000..2c5bb50
--- /dev/null
+++ b/.github/workflows/test-coverage.yaml
@@ -0,0 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          )
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

From 87b9ec9577ba595d01674ba64a233167174af5ce Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 6 Sep 2023 14:36:32 +0100
Subject: [PATCH 02/19] Fix depricated dpylr function

---
 R/frequency-tables.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/frequency-tables.R b/R/frequency-tables.R
index 974a6e6..7d6ae9d 100644
--- a/R/frequency-tables.R
+++ b/R/frequency-tables.R
@@ -1285,7 +1285,7 @@ calculate_multi_table_freqs <- function(data, col1, col2, levels1, levels2, prop
   selected_data[col2] <- factor(selected_data[[col2]], levels = levels2)
 
   frequencies <- selected_data %>%
-    count(across(c(col1, col2)), .drop=FALSE) %>%
+    count(across(all_of(c(col1, col2))), .drop=FALSE) %>%
     drop_na() %>%
     data.frame()
 

From 142592c75b12d5fe363968d32a7fa5f14dec8c7d Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 6 Sep 2023 14:37:32 +0100
Subject: [PATCH 03/19] Add test for summarise_cap_change_by_line_manage

---
 ...test-summarise_cap_change_by_line_manage.R | 49 +++++++++++++++++++
 1 file changed, 49 insertions(+)
 create mode 100644 tests/testthat/test-summarise_cap_change_by_line_manage.R

diff --git a/tests/testthat/test-summarise_cap_change_by_line_manage.R b/tests/testthat/test-summarise_cap_change_by_line_manage.R
new file mode 100644
index 0000000..84fca20
--- /dev/null
+++ b/tests/testthat/test-summarise_cap_change_by_line_manage.R
@@ -0,0 +1,49 @@
+
+dummy_data <- data.frame(management = c(NA,
+                                        rep("Yes", 5),
+                                        rep("No - I manage people who do not write code", 5),
+                                        rep("No - I don't line manage anyone", 5)),
+                         coding_ability_change = c(NA,
+                                                   rep(c("Significantly worse",
+                                                         "Slightly worse",
+                                                         "No change",
+                                                         "Slightly better",
+                                                         "Significantly better"),
+                                                   times=3)))
+
+test_that("summarise_cap_change_by_line_manage missing data is handled correctly", {
+
+  got <- summarise_cap_change_by_line_manage(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_cap_change_by_line_manage output is as expected", {
+
+  got <- summarise_cap_change_by_line_manage(dummy_data)
+
+  expected <- data.frame(management = factor(rep(c("Yes",
+                                                   "No - I manage people who do not write code",
+                                                   "No - I don't line manage anyone"),
+                                                 each=5),
+                                             levels = c("Yes",
+                                                        "No - I manage people who do not write code",
+                                                        "No - I don't line manage anyone")),
+                         coding_ability_change = factor(rep(c("Significantly worse",
+                                                        "Slightly worse",
+                                                        "No change",
+                                                        "Slightly better",
+                                                        "Significantly better"), 3),
+                                                  levels = c("Significantly worse",
+                                                             "Slightly worse",
+                                                             "No change",
+                                                             "Slightly better",
+                                                             "Significantly better")),
+                         n = c(0.20, 0.20, 0.20, 0.20, 0.20,
+                               0.20, 0.20, 0.20, 0.20, 0.20,
+                               0.20, 0.20, 0.20, 0.20, 0.20))
+
+  expect_equal(got, expected)
+
+})

From db57d2142fb9cf310e4de4a90109ec9b76dfca74 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 6 Sep 2023 15:51:32 +0100
Subject: [PATCH 04/19] Add test for summarise_open_source_by_prof

---
 .../test-summarise_open_source_by_prof.R      | 74 +++++++++++++++++++
 1 file changed, 74 insertions(+)
 create mode 100644 tests/testthat/test-summarise_open_source_by_prof.R

diff --git a/tests/testthat/test-summarise_open_source_by_prof.R b/tests/testthat/test-summarise_open_source_by_prof.R
new file mode 100644
index 0000000..e8024a2
--- /dev/null
+++ b/tests/testthat/test-summarise_open_source_by_prof.R
@@ -0,0 +1,74 @@
+# Coding tools frequency tables (access or knowledge)
+
+dummy_data <- data.frame(
+  prac_use_open_source = c(NA,
+                           rep(c("I don't understand this question",
+                               "Never",
+                               "Rarely",
+                               "Sometimes",
+                               "Regularly",
+                               "All the time"), 2)),
+  prac_open_source_own = rep("Sometimes", 13),
+  prac_version_control = rep("Sometimes", 13),
+  prac_review = rep("Sometimes", 13),
+  prac_functions = rep("Sometimes", 13),
+  prac_unit_test = rep("Sometimes", 13),
+  prac_package = rep("Sometimes", 13),
+  prac_dir_structure = rep("Sometimes", 13),
+  prac_style = rep("Sometimes", 13),
+  prac_automated_QA = rep("Sometimes", 13),
+  prac_AQUA_book = rep("Sometimes", 13),
+  prof_DS = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_DDAT = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_GAD = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_GES = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_geog = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_GORS = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_GSR = c(NA, rep(c("Yes", "No"), each=6)),
+  prof_GSG = c(NA, rep(c("Yes", "No"), each=6)))
+
+test_that("summarise_open_source_by_prof missing data is handled correctly", {
+
+  got <- summarise_open_source_by_prof(dummy_data)
+
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_open_source_by_prof output is as expected", {
+
+  got <- summarise_open_source_by_prof(dummy_data)
+
+  expected <- data.frame(name = rep(c("Data scientists",
+                                      "Digital and data (DDAT)",
+                                      "Actuaries",
+                                      "Economists (GES)",
+                                      "Geographers",
+                                      "Operational researchers (GORS)",
+                                      "Social researchers (GSR)",
+                                      "Statisticians (GSG)"), each=6),
+                         value = factor(rep(c("I don't understand this question",
+                                              "Never",
+                                              "Rarely",
+                                              "Sometimes",
+                                              "Regularly",
+                                              "All the time"), 8),
+                                        levels = c("I don't understand this question",
+                                                   "Never",
+                                                   "Rarely",
+                                                   "Sometimes",
+                                                   "Regularly",
+                                                   "All the time")),
+                         n = c(1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6,
+                               1/6, 1/6, 1/6, 1/6, 1/6, 1/6))
+
+  expect_equal(got, expected)
+
+})

From 799986adacbb46b3d7e8a9d356ad5d9b8a9d6824 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 13 Sep 2023 15:03:03 +0100
Subject: [PATCH 05/19] Add unit test for summarise heard of RAP by prof

---
 R/frequency-tables.R                          |  3 ++
 .../test-summarise_heard_of_RAP_by_prof.R     | 49 +++++++++++++++++++
 2 files changed, 52 insertions(+)
 create mode 100644 tests/testthat/test-summarise_heard_of_RAP_by_prof.R

diff --git a/R/frequency-tables.R b/R/frequency-tables.R
index 7d6ae9d..89b869e 100644
--- a/R/frequency-tables.R
+++ b/R/frequency-tables.R
@@ -1125,6 +1125,9 @@ summarise_heard_of_RAP_by_prof <- function(data) {
                                                                           1))
 
   rownames(frequencies) <- NULL
+  names(frequencies$n) <- NULL
+
+  frequencies$value <- recode(frequencies$value, !!!prof_names)
 
   return(frequencies)
 
diff --git a/tests/testthat/test-summarise_heard_of_RAP_by_prof.R b/tests/testthat/test-summarise_heard_of_RAP_by_prof.R
new file mode 100644
index 0000000..252b631
--- /dev/null
+++ b/tests/testthat/test-summarise_heard_of_RAP_by_prof.R
@@ -0,0 +1,49 @@
+# Coding tools frequency tables (access or knowledge)
+
+dummy_data <- data.frame(
+  workplace = rep(c("Civil service, including devolved administations", "Office for Students", "NHS"), each=4),
+  heard_of_RAP = rep(c("Yes", "Yes", "No", "No"), 3),
+  prof_DS = rep(c("Yes", "No"), 6),
+  prof_DDAT = rep(c("Yes", "No"), 6),
+  prof_GAD = rep(c("Yes", "No"), 6),
+  prof_GES = rep(c("Yes", "No"), 6),
+  prof_geog = rep(c("Yes", "No"), 6),
+  prof_GORS = rep(c("Yes", "No"), 6),
+  prof_GSR = rep(c("Yes", "No"), 6),
+  prof_GSG = rep(c("Yes", "No"), 6))
+
+test_that("summarise_heard_of_RAP_by_prof missing data is handled correctly", {
+
+  dummy_data[1, ] <- NA
+
+  got <- summarise_heard_of_RAP_by_prof(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_heard_of_RAP_by_prof output is as expected", {
+
+  got <- summarise_heard_of_RAP_by_prof(dummy_data)
+
+  expected <- data.frame(value = factor(c("Data scientists",
+                                          "Digital and data (DDAT)",
+                                          "Actuaries",
+                                          "Economists (GES)",
+                                          "Geographers",
+                                          "Operational researchers (GORS)",
+                                          "Social researchers (GSR)",
+                                          "Statisticians (GSG)"),
+                                        levels = c("Data scientists",
+                                                   "Digital and data (DDAT)",
+                                                   "Actuaries",
+                                                   "Economists (GES)",
+                                                   "Geographers",
+                                                   "Operational researchers (GORS)",
+                                                   "Social researchers (GSR)",
+                                                   "Statisticians (GSG)")),
+                         n = c(1/2, 1/2, 1/2, 1/2, 1/2, 1/2, 1/2, 1/2))
+
+  expect_equal(got, expected)
+
+})

From 0a83902994596d7e63de5cef4c81a98ab3d8a2e9 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Thu, 14 Sep 2023 15:41:19 +0100
Subject: [PATCH 06/19] Make calculate freqs unit test more robust

---
 tests/testthat/test-calculate_freqs.R | 42 +++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)

diff --git a/tests/testthat/test-calculate_freqs.R b/tests/testthat/test-calculate_freqs.R
index adc943f..3bdcc5f 100644
--- a/tests/testthat/test-calculate_freqs.R
+++ b/tests/testthat/test-calculate_freqs.R
@@ -17,6 +17,15 @@ expected <- data.frame(name = rep(c("Question 1",
                                       levels = c("test1", "test2", "test3")),
                        n = c(1, 0, 0, 0, 1, 0, 0.5, 0, 0.5))
 
+test_that("create_tidy_freq_table validation works", {
+
+  expect_error(calculate_freqs(data = dummy_data,
+                               questions = questions,
+                               levels = levels),
+               "Missing input: labels needed for mutli-column frequencies.")
+
+})
+
 test_that("create_tidy_freq_table missing data is handled correctly", {
 
   got <- calculate_freqs(data = dummy_data,
@@ -52,3 +61,36 @@ test_that("create_tidy_freq_table count output is as expected", {
   expect_equal(got, expected)
 
 })
+
+test_that("create_tidy_freq_table single question proportion output is as expected", {
+
+  questions <- "Q1"
+
+  got <- calculate_freqs(data = dummy_data,
+                         questions = questions,
+                         levels = levels)
+
+  expected <- data.frame(value = factor(c("test1", "test2", "test3"),
+                                        levels = c("test1", "test2", "test3")),
+                         n = c(1, 0, 0))
+
+  expect_equal(got, expected)
+
+})
+
+test_that("create_tidy_freq_table single question count output is as expected", {
+
+  questions <- "Q1"
+
+  got <- calculate_freqs(data = dummy_data,
+                         questions = questions,
+                         levels = levels,
+                         prop = FALSE)
+
+  expected <- data.frame(value = factor(c("test1", "test2", "test3"),
+                                        levels = c("test1", "test2", "test3")),
+                         n = c(1, 0, 0))
+
+  expect_equal(got, expected)
+
+})

From c634aa969e2a0cf295bbd1629e37c5d00673aead Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 20 Sep 2023 16:33:20 +0100
Subject: [PATCH 07/19] Add unit test for summarise_os_vs_prop

---
 tests/testthat/test-summarise_os_vs_prop.R | 32 ++++++++++++++++++++++
 1 file changed, 32 insertions(+)
 create mode 100644 tests/testthat/test-summarise_os_vs_prop.R

diff --git a/tests/testthat/test-summarise_os_vs_prop.R b/tests/testthat/test-summarise_os_vs_prop.R
new file mode 100644
index 0000000..4500aa6
--- /dev/null
+++ b/tests/testthat/test-summarise_os_vs_prop.R
@@ -0,0 +1,32 @@
+
+dummy_data <- data.frame(year = rep(c(2020, 2021, 2022), each=32),
+                         knowledge_python = rep(rep(c("Yes", "No"), each=16), times=3),
+                         knowledge_R = rep(rep(c("Yes", "No"), each=8), times=6),
+                         knowledge_SAS = rep(rep(c("Yes", "No"), each=4), times=12),
+                         knowledge_SPSS = rep(rep(c("Yes", "No"), each=2), times=24),
+                         knowledge_stata = rep(c("Yes", "No"), times=48))
+
+test_that("summarise_os_vs_prop missing data is handled correctly", {
+
+  dummy_data[1,2] <- NA
+
+  got <- summarise_os_vs_prop(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_os_vs_prop output is as expected", {
+
+  got <- summarise_os_vs_prop(dummy_data)
+
+  expected <- data.frame(lang_type = factor(rep(c("open source", "proprietary"), each=3),
+                                            levels = c("open source", "proprietary")),
+                         year = rep(c("2020", "2021", "2022"), times=2),
+                         Freq = rep(c(24, 28), each=3),
+                         n = rep(32, times=6)) %>%
+    get_ci(freq_col = 3, n_col = 4)
+
+  expect_equal(got, expected)
+
+})

From c14c471fe1b142ec205a1c9e54e8d44261b1bbc3 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Thu, 21 Sep 2023 14:28:22 +0100
Subject: [PATCH 08/19] Update docs

---
 docs/data_collection.html                     | 10 +--
 ...ent-fisheries-and-aquaculture-science.html | 84 +++++++++----------
 ...nd-industrial-strategy-excl-agencies-.html | 84 +++++++++----------
 ...t-for-digital-culture-media-and-sport.html | 84 +++++++++----------
 .../departments/department-for-education.html | 84 +++++++++----------
 ...food-and-rural-affairs-excl-agencies-.html | 84 +++++++++----------
 ...and-rural-affairs-including-agencies-.html | 84 +++++++++----------
 .../department-for-international-trade.html   | 84 +++++++++----------
 ...-levelling-up-housing-and-communities.html | 84 +++++++++----------
 ...partment-for-transport-excl-agencies-.html | 84 +++++++++----------
 .../department-for-work-and-pensions.html     | 84 +++++++++----------
 ...health-and-social-care-excl-agencies-.html | 84 +++++++++----------
 docs/departments/forestry-commission.html     | 84 +++++++++----------
 .../government-actuary-s-department.html      | 84 +++++++++----------
 docs/departments/hm-revenue-and-customs.html  | 84 +++++++++----------
 docs/departments/ministry-of-defence.html     | 84 +++++++++----------
 .../ministry-of-justice-excl-agencies-.html   | 84 +++++++++----------
 .../national-records-of-scotland.html         | 84 +++++++++----------
 docs/departments/nhs.html                     | 84 +++++++++----------
 ...reland-statistics-and-research-agency.html | 84 +++++++++----------
 .../office-for-national-statistics.html       | 84 +++++++++----------
 docs/departments/public-health-scotland.html  | 84 +++++++++----------
 .../scottish-government-excl-agencies-.html   | 84 +++++++++----------
 .../uk-health-security-agency.html            | 84 +++++++++----------
 docs/departments/welsh-government.html        | 84 +++++++++----------
 docs/professions/data-scientists.html         | 84 +++++++++----------
 docs/professions/digital-and-data.html        | 84 +++++++++----------
 .../government-actuarys-department.html       | 84 +++++++++----------
 .../government-economic-service.html          | 84 +++++++++----------
 docs/professions/government-geography.html    | 84 +++++++++----------
 .../government-operational-research.html      | 84 +++++++++----------
 .../government-social-research.html           | 84 +++++++++----------
 .../government-statician-group.html           | 84 +++++++++----------
 .../htmlwidgets.js                            |  0
 docs/summary.html                             | 74 ++++++++--------
 35 files changed, 1386 insertions(+), 1386 deletions(-)
 rename docs/site_libs/{htmlwidgets-1.6.2 => htmlwidgets-1.6.1}/htmlwidgets.js (100%)

diff --git a/docs/data_collection.html b/docs/data_collection.html
index 3b676ea..3d3b8f8 100644
--- a/docs/data_collection.html
+++ b/docs/data_collection.html
@@ -50,7 +50,7 @@
   }</script>
   <script src="site_libs/kePrint-0.0.1/kePrint.js"></script>
   <link href="site_libs/lightable-0.0.1/lightable.css" rel="stylesheet">
-  <script src="site_libs/htmlwidgets-1.6.2/htmlwidgets.js"></script>
+  <script src="site_libs/htmlwidgets-1.6.1/htmlwidgets.js"></script>
   <script src="site_libs/plotly-binding-4.10.1/plotly.js"></script>
   <script src="site_libs/typedarray-0.1/typedarray.min.js"></script>
   <script src="site_libs/jquery-3.5.1/jquery.min.js"></script>
@@ -267,7 +267,7 @@ <h2 class="anchored" data-anchor-id="coding-frequency">Coding frequency</h2>
   #code-freq-table {display: none;}
 </style>
 <div id="code-freq-chart" role="img" aria-label="Chart. Click the show table button to present the data as a text table instead.">
-<div class="plotly html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-42b95f1b4119b08d630c" style="width:100%;height:464px;"></div>
+<div class="plotly html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-67cfb228c14ebdbfa202" style="width:100%;height:464px;"></div>
 </div>
 <div id="code-freq-table">
 <table class="table" style="margin-left: auto; margin-right: auto;">
@@ -313,7 +313,7 @@ <h2 class="anchored" data-anchor-id="coding-frequency">Coding frequency</h2>
 </tbody>
 </table>
 </div>
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index 0fff675..8799ce5 100644
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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index ef344eb..f88380d 100644
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index e8b79cf..7c11d13 100644
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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@@ -1653,7 +1653,7 @@ <h3 class="anchored" data-anchor-id="opinions-on-rap">Opinions on RAP</h3>
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diff --git a/docs/departments/uk-health-security-agency.html b/docs/departments/uk-health-security-agency.html
index d52a016..4aa5957 100644
--- a/docs/departments/uk-health-security-agency.html
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@@ -1653,7 +1653,7 @@ <h3 class="anchored" data-anchor-id="opinions-on-rap">Opinions on RAP</h3>
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@@ -1813,7 +1813,7 @@ <h3 class="anchored" data-anchor-id="basic-rap-scores">Basic RAP scores</h3>
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 <div id="basic-rap-scores-table">
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index b266ec7..89e4e35 100644
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similarity index 100%
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diff --git a/docs/summary.html b/docs/summary.html
index 0f85c16..4c5300b 100644
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@@ -258,7 +258,7 @@ <h4 class="anchored" data-anchor-id="coding-frequency-over-time">Coding frequenc
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From ff382920536aa26165897ad29e444c9c4536de2e Mon Sep 17 00:00:00 2001
From: Rowley <Charlotte.Rowley@ons.gov.uk>
Date: Thu, 21 Sep 2023 16:02:24 +0100
Subject: [PATCH 09/19] add test for summarise_cap_change_by_CS_grade

---
 .../test-summarise_cap_change_by_CS_grade.R   | 51 +++++++++++++++++++
 .../test-summarise_cap_change_by_grade.R      | 51 +++++++++++++++++++
 2 files changed, 102 insertions(+)
 create mode 100644 tests/testthat/test-summarise_cap_change_by_CS_grade.R
 create mode 100644 tests/testthat/test-summarise_cap_change_by_grade.R

diff --git a/tests/testthat/test-summarise_cap_change_by_CS_grade.R b/tests/testthat/test-summarise_cap_change_by_CS_grade.R
new file mode 100644
index 0000000..081a7c7
--- /dev/null
+++ b/tests/testthat/test-summarise_cap_change_by_CS_grade.R
@@ -0,0 +1,51 @@
+dummy_data <- data.frame(CS_grade = c(NA,
+                                      rep("Higher Executive Officer (or equivalent)", 10),
+                                      rep("Senior Executive Officer (or equivalent)", 10),
+                                      rep("Grade 7 (or equivalent)", 5),
+                                      rep("Grade 6 (or equivalent)", 5)),
+                         coding_ability_change = c(NA,
+                                                   rep(c("Significantly worse",
+                                                       "Slightly worse",
+                                                       "No change",
+                                                       "Slightly better",
+                                                       "Significantly better"),
+                                                     times = 6)))
+
+test_that("summarise_cap_change_by_CS_grade missing data is handled correctly", {
+
+  got <- summarise_cap_change_by_CS_grade(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_cap_change_by_CS_grade output is as expected", {
+
+  got <- summarise_cap_change_by_CS_grade(dummy_data)
+
+  expected <- data.frame(CS_grade = factor(rep(c("Higher Executive Officer (or equivalent)",
+                                                  "Senior Executive Officer (or equivalent)",
+                                                  "Grade 6 and 7"),
+                                           each = 5),
+                                           levels = c("Higher Executive Officer (or equivalent)",
+                                                     "Senior Executive Officer (or equivalent)",
+                                                     "Grade 6 and 7")),
+                         coding_ability_change = factor(rep(c("Significantly worse",
+                                                                "Slightly worse",
+                                                                "No change",
+                                                                "Slightly better",
+                                                                "Significantly better"), 3),
+                                                            levels = c("Significantly worse",
+                                                                       "Slightly worse",
+                                                                       "No change",
+                                                                       "Slightly better",
+                                                                       "Significantly better")),
+                         n = c(0.20, 0.20, 0.20, 0.20, 0.20,
+                               0.20, 0.20, 0.20, 0.20, 0.20,
+                               0.20, 0.20, 0.20, 0.20, 0.20))
+
+
+  expect_equal(got, expected)
+
+
+})
diff --git a/tests/testthat/test-summarise_cap_change_by_grade.R b/tests/testthat/test-summarise_cap_change_by_grade.R
new file mode 100644
index 0000000..081a7c7
--- /dev/null
+++ b/tests/testthat/test-summarise_cap_change_by_grade.R
@@ -0,0 +1,51 @@
+dummy_data <- data.frame(CS_grade = c(NA,
+                                      rep("Higher Executive Officer (or equivalent)", 10),
+                                      rep("Senior Executive Officer (or equivalent)", 10),
+                                      rep("Grade 7 (or equivalent)", 5),
+                                      rep("Grade 6 (or equivalent)", 5)),
+                         coding_ability_change = c(NA,
+                                                   rep(c("Significantly worse",
+                                                       "Slightly worse",
+                                                       "No change",
+                                                       "Slightly better",
+                                                       "Significantly better"),
+                                                     times = 6)))
+
+test_that("summarise_cap_change_by_CS_grade missing data is handled correctly", {
+
+  got <- summarise_cap_change_by_CS_grade(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_cap_change_by_CS_grade output is as expected", {
+
+  got <- summarise_cap_change_by_CS_grade(dummy_data)
+
+  expected <- data.frame(CS_grade = factor(rep(c("Higher Executive Officer (or equivalent)",
+                                                  "Senior Executive Officer (or equivalent)",
+                                                  "Grade 6 and 7"),
+                                           each = 5),
+                                           levels = c("Higher Executive Officer (or equivalent)",
+                                                     "Senior Executive Officer (or equivalent)",
+                                                     "Grade 6 and 7")),
+                         coding_ability_change = factor(rep(c("Significantly worse",
+                                                                "Slightly worse",
+                                                                "No change",
+                                                                "Slightly better",
+                                                                "Significantly better"), 3),
+                                                            levels = c("Significantly worse",
+                                                                       "Slightly worse",
+                                                                       "No change",
+                                                                       "Slightly better",
+                                                                       "Significantly better")),
+                         n = c(0.20, 0.20, 0.20, 0.20, 0.20,
+                               0.20, 0.20, 0.20, 0.20, 0.20,
+                               0.20, 0.20, 0.20, 0.20, 0.20))
+
+
+  expect_equal(got, expected)
+
+
+})

From 92fe3656da3b5cbaacfb9f51e55d71ca7046597c Mon Sep 17 00:00:00 2001
From: Rowley <Charlotte.Rowley@ons.gov.uk>
Date: Thu, 21 Sep 2023 17:40:43 +0100
Subject: [PATCH 10/19] Add unit test summarise_rap_awareness_over_time

---
 .../test-summarise_rap_awareness_over_time.R  | 43 +++++++++++++++++++
 1 file changed, 43 insertions(+)
 create mode 100644 tests/testthat/test-summarise_rap_awareness_over_time.R

diff --git a/tests/testthat/test-summarise_rap_awareness_over_time.R b/tests/testthat/test-summarise_rap_awareness_over_time.R
new file mode 100644
index 0000000..5a3204b
--- /dev/null
+++ b/tests/testthat/test-summarise_rap_awareness_over_time.R
@@ -0,0 +1,43 @@
+heard_of_RAP <- c(NA,
+                  rep(c("Yes",
+                        "No"),
+                      times = 6))
+
+year <- c(NA,
+          rep(c("2020",
+                "2021",
+                "2022"),
+              each = 4))
+
+dummy_data <- data.frame(heard_of_RAP, year)
+
+test_that("summarise_rap_awareness_over_time missing data is handled correctly", {
+
+  got <- summarise_rap_awareness_over_time(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_rap_awareness_over_time output is as expected", {
+
+  got <- summarise_rap_awareness_over_time(dummy_data)
+
+  expected <- data.frame(Var1 = factor(rep("Yes", 3),
+                                       levels = c("No", "Yes")),
+                         Var2 = factor(c("2020", "2021", "2022"),
+                                       levels = c("2020", "2021", "2022")),
+                         Freq = c(2),
+                         n = c(4),
+                         percent = c(0.5),
+                         lower = c(0.15003899),
+                         upper = c(0.849961),
+                         lower_ci = c(0.34996101),
+                         upper_ci = c(0.34996101))
+
+  expect_equal(got, expected)
+
+
+})
+
+

From 78f483f91bf4aaedf387429a01af6589ea5b6e8f Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Fri, 22 Sep 2023 12:08:05 +0100
Subject: [PATCH 11/19] Add unit test for summarise_rap_awareness_over_time

---
 tests/testthat/test-rap_awareness_over_time.R | 29 +++++++++++++++++++
 1 file changed, 29 insertions(+)
 create mode 100644 tests/testthat/test-rap_awareness_over_time.R

diff --git a/tests/testthat/test-rap_awareness_over_time.R b/tests/testthat/test-rap_awareness_over_time.R
new file mode 100644
index 0000000..98688ea
--- /dev/null
+++ b/tests/testthat/test-rap_awareness_over_time.R
@@ -0,0 +1,29 @@
+
+dummy_data <- data.frame(year = rep(c(2020, 2021, 2022), each=2),
+                         heard_of_RAP = rep(c("Yes", "No"), times=3))
+
+test_that("summarise_rap_awareness_over_time missing data is handled correctly", {
+
+  dummy_data[1,2] <- NA
+
+  got <- summarise_rap_awareness_over_time(dummy_data)
+
+  expect_false(any(is.na.data.frame(got)))
+
+})
+
+test_that("summarise_rap_awareness_over_time output is as expected", {
+
+  got <- summarise_rap_awareness_over_time(dummy_data)
+
+  expected <- data.frame(Var1 = factor(c("Yes", "Yes", "Yes"),
+                                       levels = c("No", "Yes")),
+                         Var2 = factor(c("2020", "2021", "2022"),
+                                       levels = c("2020", "2021", "2022")),
+                         Freq = c(1, 1, 1),
+                         n = c(2, 2, 2)) %>%
+    get_ci(freq_col = 3, n_col = 4)
+
+  expect_equal(got, expected)
+
+})

From 856055a997686149fb6750c4eafc7a590af74a78 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Fri, 22 Sep 2023 12:18:21 +0100
Subject: [PATCH 12/19] Delete duplicate unit test

---
 .../test-summarise_cap_change_by_grade.R      | 51 -------------------
 1 file changed, 51 deletions(-)
 delete mode 100644 tests/testthat/test-summarise_cap_change_by_grade.R

diff --git a/tests/testthat/test-summarise_cap_change_by_grade.R b/tests/testthat/test-summarise_cap_change_by_grade.R
deleted file mode 100644
index 081a7c7..0000000
--- a/tests/testthat/test-summarise_cap_change_by_grade.R
+++ /dev/null
@@ -1,51 +0,0 @@
-dummy_data <- data.frame(CS_grade = c(NA,
-                                      rep("Higher Executive Officer (or equivalent)", 10),
-                                      rep("Senior Executive Officer (or equivalent)", 10),
-                                      rep("Grade 7 (or equivalent)", 5),
-                                      rep("Grade 6 (or equivalent)", 5)),
-                         coding_ability_change = c(NA,
-                                                   rep(c("Significantly worse",
-                                                       "Slightly worse",
-                                                       "No change",
-                                                       "Slightly better",
-                                                       "Significantly better"),
-                                                     times = 6)))
-
-test_that("summarise_cap_change_by_CS_grade missing data is handled correctly", {
-
-  got <- summarise_cap_change_by_CS_grade(dummy_data)
-
-  expect_false(any(is.na.data.frame(got)))
-
-})
-
-test_that("summarise_cap_change_by_CS_grade output is as expected", {
-
-  got <- summarise_cap_change_by_CS_grade(dummy_data)
-
-  expected <- data.frame(CS_grade = factor(rep(c("Higher Executive Officer (or equivalent)",
-                                                  "Senior Executive Officer (or equivalent)",
-                                                  "Grade 6 and 7"),
-                                           each = 5),
-                                           levels = c("Higher Executive Officer (or equivalent)",
-                                                     "Senior Executive Officer (or equivalent)",
-                                                     "Grade 6 and 7")),
-                         coding_ability_change = factor(rep(c("Significantly worse",
-                                                                "Slightly worse",
-                                                                "No change",
-                                                                "Slightly better",
-                                                                "Significantly better"), 3),
-                                                            levels = c("Significantly worse",
-                                                                       "Slightly worse",
-                                                                       "No change",
-                                                                       "Slightly better",
-                                                                       "Significantly better")),
-                         n = c(0.20, 0.20, 0.20, 0.20, 0.20,
-                               0.20, 0.20, 0.20, 0.20, 0.20,
-                               0.20, 0.20, 0.20, 0.20, 0.20))
-
-
-  expect_equal(got, expected)
-
-
-})

From 30b930793de087863ca44e6e97b745e73c5f0a47 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Tue, 26 Sep 2023 12:09:40 +0100
Subject: [PATCH 13/19] Add horizontal test for freq_subplots

---
 tests/testthat/test-freq_subplots.R | 27 ++++++++++++++++++++++++++-
 1 file changed, 26 insertions(+), 1 deletion(-)

diff --git a/tests/testthat/test-freq_subplots.R b/tests/testthat/test-freq_subplots.R
index b59c76c..e468488 100644
--- a/tests/testthat/test-freq_subplots.R
+++ b/tests/testthat/test-freq_subplots.R
@@ -25,7 +25,7 @@ got <- freq_subplots(dummy_data, xlab = "x", ylab = "y",
 
 for(i in 1:length(unique(dummy_data[[2]]))){
   j = 2*i - 1
-  testthat::test_that("expected outputs achieved",
+  testthat::test_that("expected outputs for vertical chart achieved",
                       {
                         # x values
                         testthat::expect_equal(c(got$x$data[[j]]$x), factor(levels1, levels = levels1))
@@ -43,3 +43,28 @@ for(i in 1:length(unique(dummy_data[[2]]))){
                         testthat::expect_equal(got$x$data[[j]]$title, factor(i, levels = c(1, 2, 3)))
                       })
 }
+
+got <- freq_subplots(dummy_data, xlab = "x", ylab = "y",
+                     height = 500, width = 300, nrows = 3,
+                     y_margin = .3, x_margin = .3, orientation = "h")
+
+for(i in 1:length(unique(dummy_data[[2]]))){
+  j = 2*i - 1
+  testthat::test_that("expected outputs for horizontal chart achieved",
+                      {
+                        # x values
+                        testthat::expect_equal(c(got$x$data[[j]]$y), factor(levels1, levels = rev(levels1)))
+
+                        # y values
+                        testthat::expect_equal(c(got$x$data[[j]]$x), dummy_data[dummy_data$Q2 == i, "n"])
+
+                        # Bar colors
+                        testthat::expect_equal(got$x$data[[j]]$marker$color, "#004556")
+
+                        # Plot orientation
+                        testthat::expect_equal(got$x$data[[j]]$orientation, "h")
+
+                        # Title
+                        testthat::expect_equal(got$x$data[[j]]$title, factor(i, levels = c(1, 2, 3)))
+                      })
+}

From 51bc7eef77e6f7f186befb6bbbe0ea9597ed5165 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Tue, 26 Sep 2023 12:14:55 +0100
Subject: [PATCH 14/19] Add horizontal test for plot_freqs

---
 tests/testthat/test-plot_freqs.R | 40 ++++++++++++++++++++++++++++++--
 1 file changed, 38 insertions(+), 2 deletions(-)

diff --git a/tests/testthat/test-plot_freqs.R b/tests/testthat/test-plot_freqs.R
index e798ea2..179cb3a 100644
--- a/tests/testthat/test-plot_freqs.R
+++ b/tests/testthat/test-plot_freqs.R
@@ -18,10 +18,12 @@ testthat::test_that("validity checks work",
                       testthat::expect_error(plot_freqs(dummy_data, font_size = "x"), "Unexpected input - font_size is not numeric.")
                     })
 
-got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y", break_q_names_col = TRUE)
-
 testthat::test_that("expected outputs achieved",
                     {
+
+                      got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y",
+                                        break_q_names_col = TRUE, orientation = "v")
+
                       # x and y values
                       testthat::expect_equal(c(got$x$attrs[[1]]$x), factor(c("This is test<br>number one", "This is test<br>2", "test3"),
                                                                               levels = c("This is test<br>number one", "This is test<br>2", "test3")))
@@ -49,3 +51,37 @@ testthat::test_that("expected outputs achieved",
                       testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$font$size, 12)
 
                     })
+
+testthat::test_that("expected outputs achieved",
+                    {
+
+                      got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y",
+                                        break_q_names_col = TRUE, orientation = "h")
+
+                      # x and y values
+                      testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(c("This is test<br>number one", "This is test<br>2", "test3"),
+                                                                           levels = rev(c("This is test<br>number one", "This is test<br>2", "test3"))))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$x), c(0.5, 0.2, 0.8))
+
+                      # Bar colors
+                      testthat::expect_equal(got$x$attrs[[1]]$marker$color, "#004556")
+
+                      # Plot orientation
+                      testthat::expect_equal(got$x$attrs[[1]]$orientation, "h")
+
+                      # Sample size
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$text, "Sample size = 100")
+
+                      # Axis labels
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$title, "y")
+                      testthat::expect_equal(got$x$layoutAttrs[[2]]$annotations$text, "x")
+
+                      # Font sizes
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$titlefont$size, 14.4)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$tickfont$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$yaxis$titlefont$size, 14.4)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$yaxis$tickfont$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$hoverlabel$font$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$font$size, 12)
+
+                    })

From e28ce84816ae83b5947e33a5930e5eb2faafde9c Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Tue, 26 Sep 2023 12:21:18 +0100
Subject: [PATCH 15/19] Add line chart test for plot_freqs

---
 tests/testthat/test-plot_freqs.R | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/tests/testthat/test-plot_freqs.R b/tests/testthat/test-plot_freqs.R
index 179cb3a..ac6d67b 100644
--- a/tests/testthat/test-plot_freqs.R
+++ b/tests/testthat/test-plot_freqs.R
@@ -22,7 +22,9 @@ testthat::test_that("expected outputs achieved",
                     {
 
                       got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y",
-                                        break_q_names_col = TRUE, orientation = "v")
+                                        break_q_names_col = TRUE,
+                                        type = "bar",
+                                        orientation = "v")
 
                       # x and y values
                       testthat::expect_equal(c(got$x$attrs[[1]]$x), factor(c("This is test<br>number one", "This is test<br>2", "test3"),
@@ -56,7 +58,9 @@ testthat::test_that("expected outputs achieved",
                     {
 
                       got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y",
-                                        break_q_names_col = TRUE, orientation = "h")
+                                        break_q_names_col = TRUE,
+                                        type = "line",
+                                        orientation = "h")
 
                       # x and y values
                       testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(c("This is test<br>number one", "This is test<br>2", "test3"),

From d59f30a652051040f1e968675de1eab56b2e00b9 Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 27 Sep 2023 13:23:47 +0100
Subject: [PATCH 16/19] Add line chart and vertical chart tests for
 plot_stacked

---
 tests/testthat/test-plot_stacked.R | 56 ++++++++++++++++++++++++++----
 1 file changed, 49 insertions(+), 7 deletions(-)

diff --git a/tests/testthat/test-plot_stacked.R b/tests/testthat/test-plot_stacked.R
index 3a6a050..f45ae7c 100644
--- a/tests/testthat/test-plot_stacked.R
+++ b/tests/testthat/test-plot_stacked.R
@@ -1,6 +1,6 @@
 
-dummy_data <- data.frame(Q1 = rep(c("test1",
-                                    "test2",
+dummy_data <- data.frame(Q1 = rep(c("This is test number one",
+                                    "This is test 2",
                                     "test3"), each = 3),
                          Q2 = factor(rep(c(1, 2, 3), 3),
                                      levels = c(1, 2, 3)),
@@ -17,13 +17,16 @@ testthat::test_that("validity checks work",
                       testthat::expect_error(plot_stacked(dummy_data, font_size = "x"), "Unexpected input - font_size is not numeric.")
                     })
 
-got <- plot_stacked(dummy_data, n = 100, xlab = "x", ylab = "y")
-
-testthat::test_that("expected outputs achieved",
+testthat::test_that("expected outputs for horizontal chart achieved",
                     {
+
+                      got <- plot_stacked(dummy_data, n = 100, xlab = "x", ylab = "y",
+                                          orientation = "h",
+                                          break_q_names_col = TRUE,)
+
                       # x and y values
-                      testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(rep(c("test1", "test2", "test3"), each = 3),
-                                                                           levels = c("test3", "test2", "test1")))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(rep(c("This is test<br>number one", "This is test<br>2", "test3"), each = 3),
+                                                                           levels = c("test3", "This is test<br>2", "This is test<br>number one")))
                       testthat::expect_equal(c(got$x$attrs[[1]]$x), c(0.1, 0.3, 0.6, 0.5, 0.25, 0.25, 0.33, 0.33, 0.34))
 
                       # Bar colors
@@ -49,3 +52,42 @@ testthat::test_that("expected outputs achieved",
                       testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$font$size, 12)
 
                     })
+
+
+
+testthat::test_that("expected outputs for vertical chart achieved",
+                    {
+
+                      got <- plot_stacked(dummy_data, n = 100, xlab = "x", ylab = "y",
+                                          orientation = "v",
+                                          type = "line",
+                                          break_q_names_col = TRUE,)
+
+                      # x and y values
+                      testthat::expect_equal(c(got$x$attrs[[1]]$x), factor(rep(c("This is test<br>number one", "This is test<br>2", "test3"), each = 3),
+                                                                           levels = rev(c("test3", "This is test<br>2", "This is test<br>number one"))))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$y), c(0.1, 0.3, 0.6, 0.5, 0.25, 0.25, 0.33, 0.33, 0.34))
+
+                      # Bar colors
+                      testthat::expect_equal(got$x$attrs[[1]]$marker$color, c("#004556", "#004556", "#004556", "#AFAFAF", "#AFAFAF", "#AFAFAF", "#FF6900", "#FF6900", "#FF6900"))
+
+                      # Plot orientation
+                      testthat::expect_equal(got$x$attrs[[1]]$orientation, "v")
+
+                      # Sample size
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$text, "Sample size = 100")
+
+                      # Axis labels
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$title, "x")
+                      testthat::expect_equal(got$x$layoutAttrs[[2]]$annotations$text, "y")
+
+                      # Font sizes
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$legend$font$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$titlefont$size, 14.4)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$tickfont$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$yaxis$titlefont$size, 14.4)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$yaxis$tickfont$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$hoverlabel$font$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$font$size, 12)
+
+                    })

From 4e97101f6b32ac68f19a7481c830a18bae6c65bb Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 4 Oct 2023 14:33:57 +0100
Subject: [PATCH 17/19] Add horizontal test for plot_grouped

---
 tests/testthat/test-plot_freqs.R   |  4 +--
 tests/testthat/test-plot_grouped.R | 48 ++++++++++++++++++++++++++----
 2 files changed, 44 insertions(+), 8 deletions(-)

diff --git a/tests/testthat/test-plot_freqs.R b/tests/testthat/test-plot_freqs.R
index ac6d67b..39e842d 100644
--- a/tests/testthat/test-plot_freqs.R
+++ b/tests/testthat/test-plot_freqs.R
@@ -18,7 +18,7 @@ testthat::test_that("validity checks work",
                       testthat::expect_error(plot_freqs(dummy_data, font_size = "x"), "Unexpected input - font_size is not numeric.")
                     })
 
-testthat::test_that("expected outputs achieved",
+testthat::test_that("expected outputs for vertical chart achieved",
                     {
 
                       got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y",
@@ -54,7 +54,7 @@ testthat::test_that("expected outputs achieved",
 
                     })
 
-testthat::test_that("expected outputs achieved",
+testthat::test_that("expected outputs for horizontal chart achieved",
                     {
 
                       got <- plot_freqs(dummy_data, n = 100, xlab = "x", ylab = "y",
diff --git a/tests/testthat/test-plot_grouped.R b/tests/testthat/test-plot_grouped.R
index cb2337e..6658c45 100644
--- a/tests/testthat/test-plot_grouped.R
+++ b/tests/testthat/test-plot_grouped.R
@@ -1,4 +1,4 @@
-levels1 <- c("test1", "test2", "test3", "test4", "test5")
+levels1 <- c("This is test number one", "This is test 2", "test3", "test4", "test5")
 
 dummy_data <- data.frame(Q1 = factor(levels1,
                                     levels = levels1),
@@ -10,6 +10,7 @@ testthat::test_that("validity checks work",
                     {
                       testthat::expect_error(plot_grouped(as.list(dummy_data)), "Unexpected input - data is not a data.frame.")
                       testthat::expect_error(plot_grouped(dplyr::mutate(dummy_data, Q3 = Q1)), "Unexpected input - data does not contain 3 columns.")
+                      testthat::expect_error(plot_grouped(dplyr::mutate(dummy_data, n = as.character(n))), "Unexpected input - data column 3 is not numeric.")
                       testthat::expect_error(plot_grouped(dummy_data, xlab = 1), "Unexpected input - labels should be single character strings.")
                       testthat::expect_error(plot_grouped(dummy_data, ylab = 1), "Unexpected input - labels should be single character strings.")
                       testthat::expect_error(plot_grouped(dummy_data, xlab = c("1", "2")), "Unexpected input - labels should be single character strings.")
@@ -17,13 +18,16 @@ testthat::test_that("validity checks work",
                       testthat::expect_error(plot_grouped(dummy_data, font_size = "x"), "Unexpected input - font_size is not numeric.")
                     })
 
-got <- plot_grouped(dummy_data, n = 100, xlab = "x", ylab = "y")
-
-testthat::test_that("expected outputs achieved",
+testthat::test_that("expected outputs for vertical chart achieved",
                     {
+
+                      got <- plot_grouped(dummy_data, n = 100, xlab = "x", ylab = "y",
+                                          break_q_names_col = TRUE,
+                                          orientation = "v")
+
                       # x and y values
-                      testthat::expect_equal(c(got$x$attrs[[1]]$x), factor(levels1,
-                                                                           levels = levels1))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$x), factor(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"),
+                                                                           levels = rev(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"))))
                       testthat::expect_equal(c(got$x$attrs[[1]]$y), c(0.2, 0.5, 0.3, 0.8, 0.6))
 
                       # Bar colors
@@ -45,3 +49,35 @@ testthat::test_that("expected outputs achieved",
                       testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$font$size, 12)
 
                     })
+
+testthat::test_that("expected outputs for horizontal chart achieved",
+                    {
+
+                      got <- plot_grouped(dummy_data, n = 100, xlab = "x", ylab = "y",
+                                          break_q_names_col = TRUE,
+                                          orientation = "h")
+
+                      # x and y values
+                      testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"),
+                                                                           levels = c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5")))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$x), c(0.2, 0.5, 0.3, 0.8, 0.6))
+
+                      # Bar colors
+                      testthat::expect_equal(got$x$attrs[[1]]$marker$color, c("#FF6900", "#FF6900", "#FF6900", "#004556", "#004556"))
+
+                      # Sample size
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$text, "Sample size = 100")
+
+                      # Axis labels
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$title, "y")
+                      testthat::expect_equal(got$x$layoutAttrs[[2]]$annotations$text, "x")
+
+                      # Font sizes
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$titlefont$size, 14.4)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$xaxis$tickfont$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$yaxis$titlefont$size, 14.4)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$yaxis$tickfont$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$hoverlabel$font$size, 12)
+                      testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$font$size, 12)
+
+                    })

From ae0b0471db84b756e0d3148538aa4bbf929be8ae Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 4 Oct 2023 14:34:30 +0100
Subject: [PATCH 18/19] Remove github action for test coverage

---
 .github/workflows/test-coverage.yaml | 50 ----------------------------
 1 file changed, 50 deletions(-)
 delete mode 100644 .github/workflows/test-coverage.yaml

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
deleted file mode 100644
index 2c5bb50..0000000
--- a/.github/workflows/test-coverage.yaml
+++ /dev/null
@@ -1,50 +0,0 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  push:
-    branches: [main, master]
-  pull_request:
-    branches: [main, master]
-
-name: test-coverage
-
-jobs:
-  test-coverage:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v3
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr
-          needs: coverage
-
-      - name: Test coverage
-        run: |
-          covr::codecov(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
-          )
-        shell: Rscript {0}
-
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v3
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package

From 2f97ea5171e23da83c006f8bf90da66efc50060c Mon Sep 17 00:00:00 2001
From: ldavies99 <Luke.Davies@ext.ons.gov.uk>
Date: Wed, 4 Oct 2023 14:50:34 +0100
Subject: [PATCH 19/19] Fix plot_grouped horizontal test

---
 tests/testthat/test-plot_grouped.R | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/tests/testthat/test-plot_grouped.R b/tests/testthat/test-plot_grouped.R
index 6658c45..71ffd11 100644
--- a/tests/testthat/test-plot_grouped.R
+++ b/tests/testthat/test-plot_grouped.R
@@ -27,7 +27,7 @@ testthat::test_that("expected outputs for vertical chart achieved",
 
                       # x and y values
                       testthat::expect_equal(c(got$x$attrs[[1]]$x), factor(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"),
-                                                                           levels = rev(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"))))
+                                                                           levels = c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5")))
                       testthat::expect_equal(c(got$x$attrs[[1]]$y), c(0.2, 0.5, 0.3, 0.8, 0.6))
 
                       # Bar colors
@@ -58,12 +58,12 @@ testthat::test_that("expected outputs for horizontal chart achieved",
                                           orientation = "h")
 
                       # x and y values
-                      testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"),
-                                                                           levels = c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5")))
-                      testthat::expect_equal(c(got$x$attrs[[1]]$x), c(0.2, 0.5, 0.3, 0.8, 0.6))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$y), factor(rev(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5")),
+                                                                           levels = rev(c("This is test<br>number one", "This is test<br>2", "test3", "test4", "test5"))))
+                      testthat::expect_equal(c(got$x$attrs[[1]]$x), rev(c(0.2, 0.5, 0.3, 0.8, 0.6)))
 
                       # Bar colors
-                      testthat::expect_equal(got$x$attrs[[1]]$marker$color, c("#FF6900", "#FF6900", "#FF6900", "#004556", "#004556"))
+                      testthat::expect_equal(got$x$attrs[[1]]$marker$color, rev(c("#FF6900", "#FF6900", "#FF6900", "#004556", "#004556")))
 
                       # Sample size
                       testthat::expect_equal(got$x$layoutAttrs[[1]]$annotations$text, "Sample size = 100")