From e47e8519f5b2cf876136bc2e8502070323116997 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jo=C3=A3o=20Cavalcante?= Date: Wed, 10 Apr 2024 10:46:35 -0300 Subject: [PATCH] chore: Bump ppanggolin version (#188) Signed-off-by: jvfe --- .gitignore | 1 + modules/local/ppanggolin/msa/main.nf | 6 +++--- modules/local/ppanggolin/workflow/main.nf | 6 +++--- 3 files changed, 7 insertions(+), 6 deletions(-) diff --git a/.gitignore b/.gitignore index 6b18b392..c715cad5 100644 --- a/.gitignore +++ b/.gitignore @@ -7,4 +7,5 @@ testing/ testing* *.pyc .nf-test +.nf-test.log test.nf diff --git a/modules/local/ppanggolin/msa/main.nf b/modules/local/ppanggolin/msa/main.nf index d9736b09..a0c8e8d8 100644 --- a/modules/local/ppanggolin/msa/main.nf +++ b/modules/local/ppanggolin/msa/main.nf @@ -3,10 +3,10 @@ process PPANGGOLIN_MSA { label 'process_high' label 'process_high_memory' - conda "bioconda::ppanggolin=1.2.105" + conda "bioconda::ppanggolin=2.0.5" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/ppanggolin:1.2.105--py37h8902056_0': - 'quay.io/biocontainers/ppanggolin:1.2.105--py37h8902056_0' }" + 'https://depot.galaxyproject.org/singularity/ppanggolin:2.0.5--py39hf95cd2a_0': + 'quay.io/biocontainers/ppanggolin:2.0.5--py39hf95cd2a_0' }" input: tuple val(meta), path(pangenome) diff --git a/modules/local/ppanggolin/workflow/main.nf b/modules/local/ppanggolin/workflow/main.nf index f65f71f1..462c0c75 100644 --- a/modules/local/ppanggolin/workflow/main.nf +++ b/modules/local/ppanggolin/workflow/main.nf @@ -4,10 +4,10 @@ process PPANGGOLIN_WORKFLOW { label 'process_high_memory' label 'process_long' - conda "bioconda::ppanggolin=1.2.105" + conda "bioconda::ppanggolin=2.0.5" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/ppanggolin:1.2.105--py37h8902056_0': - 'quay.io/biocontainers/ppanggolin:1.2.105--py37h8902056_0' }" + 'https://depot.galaxyproject.org/singularity/ppanggolin:2.0.5--py39hf95cd2a_0': + 'quay.io/biocontainers/ppanggolin:2.0.5--py39hf95cd2a_0' }" input: tuple val(meta), path(samplesheet)