diff --git a/conf/modules.config b/conf/modules.config index 4b68380..cf529bc 100755 --- a/conf/modules.config +++ b/conf/modules.config @@ -389,6 +389,7 @@ process { // phylogenomics withName: IQTREE { + ext.args = '-m HKY+F+G+ASC -fast' publishDir = [ path: { "${params.outdir}/phylogenomics/iqtree" }, mode: params.publish_dir_mode,