From 0b6353a5be3de22cb6cf72c263d82807e673a47c Mon Sep 17 00:00:00 2001
From: jvfe <jvfecav@gmail.com>
Date: Fri, 29 Mar 2024 08:30:58 -0300
Subject: [PATCH] hotfix: Remove publishDir from phylo check

Signed-off-by: jvfe <jvfecav@gmail.com>
---
 modules/local/samplesheet_check.nf | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf
index 20542d9..9010b40 100644
--- a/modules/local/samplesheet_check.nf
+++ b/modules/local/samplesheet_check.nf
@@ -46,9 +46,6 @@ process ASSEMBLYSHEET_CHECK {
 
 process PHYLOSHEET_CHECK {
     tag "$phylosheet"
-    publishDir "${params.outdir}",
-        mode: params.publish_dir_mode,
-        saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:'pipeline_info', publish_id:'') }
 
     conda (params.enable_conda ? "conda-forge::python=3.8.3" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {