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For the moment only coding sequences, tRNA and rRNA are included. If no CDS, exon is available the element is not included. We should include:
Test on eukaryotes with exon, intron and specific stuff
Modify specifically: GFFNCBIReader.addSequences(LinkedHashMap<String, ChromosomeBacteriaSequence> chromosomes,HashMap<String, ArrayList<FeatureI>> listLocusTag) In package bacnet.reader
GFFNCBIReader.addSequences(LinkedHashMap<String, ChromosomeBacteriaSequence> chromosomes,HashMap<String, ArrayList<FeatureI>> listLocusTag)
package bacnet.reader
Specifically if only one GFF line is available per feature ! Manage both cases
The text was updated successfully, but these errors were encountered:
drbecavin
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For the moment only coding sequences, tRNA and rRNA are included.
If no CDS, exon is available the element is not included.
We should include:
Test on eukaryotes with exon, intron and specific stuff
Modify specifically:
GFFNCBIReader.addSequences(LinkedHashMap<String, ChromosomeBacteriaSequence> chromosomes,HashMap<String, ArrayList<FeatureI>> listLocusTag)
In
package bacnet.reader
Specifically if only one GFF line is available per feature !
Manage both cases
The text was updated successfully, but these errors were encountered: