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bdaisley / isolateR Public

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consensus

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Sarah Vancuren edited this page Mar 22, 2024 · 1 revision

Forming consensus sequences

Toggle table of contents Pages 16

Home
consensus
- Forming consensus sequences
customdb
get_db
get_vsearch
isoALL
isoLIB
isoQC
isoTAX
qc_tax_singlereads
sanger_consensus
search_db
strainlib
tree
trimparam
validtaxonomy

Tutorials:

Characterizing single-read Sanger sequences
Forming consensus sequences
Creating and updating strain libraries
Creating custom databases
Modifying trimming parameters
Making a tree from a strain library
Checking taxonomy for valid names

Example Datasets

Function descriptions:

isoALL
- isoQC
- isoTAX
- isoLIB
get_db
sanger_consensus
search_db
make_tree
valid_tax_check

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