unit_tests.yml

## Disclaimer - This GitHub Actions workflow runs all the unit tests for the project.

# Name the workflow
name: unit_testing

# Define when it runs
on:
  push:
    paths:
      - 'narps_open/**'
      - 'setup.py'
      - 'pytest.ini'
      - 'tests/conftest.py'
  pull_request:
    paths:
      - 'narps_open/**'
      - 'setup.py'
      - 'pytest.ini'
      - 'tests/conftest.py'

# Jobs that define the workflow
jobs:

  # Name of the job running unit tests
  pytest:

    # Define the runner for this job
    runs-on: self-hosted

    # Steps that define the job
    steps:
    - name: Checkout repository
      uses: actions/checkout@v3

    - name: Load configuration for self-hosted runner
      run: cp /home/neuro/local_testing_config.toml narps_open/utils/configuration/testing_config.toml

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install .[tests]

    - name: Launch tests with pytest & get code coverage
      run: |
        coverage run -m pytest --junit-xml=pytest_report.xml -m "not pipeline_test"
        coverage report
        coverage xml

    - name: Archive pytest results
      if: ${{ failure() }} # Run only if previous job fails
      uses: actions/upload-artifact@v3
      with:
        name: unit_tests-reports
        path: |
          pytest_report.xml
          coverage.xml
        retention-days: 15