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error with load_civic #151

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wx115 opened this issue Apr 21, 2024 · 0 comments
Open

error with load_civic #151

wx115 opened this issue Apr 21, 2024 · 0 comments

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@wx115
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wx115 commented Apr 21, 2024

Unable to run load_civic. After some check, I found message returned from civic v2 api says 2 errors

message: "Fragment on Gene can't be spread inside MolecularProfileSegment".
locations: [ [object] ],
path: [
'query evidenceItems',
'evidenceItems',
'nodes',
'molecularprofile',
'parsedName',
'... on Gene'
],

message: "Field 'gene''doesn't exist on type 'VariantInterface'",
locations: [ [object] ],
path:「
'query evidenceltems',
'evidenceItems',
'nodes',
'molecularProfile',
'variants',
'gene'
],

I checked civic-v2 schema (https://griffithlab.github.io/civic-v2/) and confirmed that "parsedName" has no "Gene", and "variants" has no "gene". Is it a newly update from civic-v2 schema and would you update evidenceItems.graphql and affected code accordingly?

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