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dependency-reduced-pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.expasy.mzjava</groupId>
<artifactId>NewAnce</artifactId>
<version>1.7.5-SNAPSHOT</version>
<developers>
<developer>
<id>Markus Muller</id>
<name>Markus Muller</name>
<email>[email protected]</email>
<organization>Swiss Institute of Bioinformatics</organization>
</developer>
</developers>
<build>
<plugins>
<plugin>
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<minimizeJar>false</minimizeJar>
<transformers>
<transformer>
<mainClass>newance.psmcombiner.CometMaxQuantCombiner</mainClass>
</transformer>
</transformers>
<filters>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>com.google.inject:*</exclude>
<exclude>com.google.inject.extensions:guice-servlet</exclude>
<exclude>com.google.protobuf:*</exclude>
<exclude>com.jcraft:jsch</exclude>
<exclude>com.sun.jersey:*</exclude>
<exclude>com.sun.jersey.contribs:*</exclude>
<exclude>com.sun.jersey.jersey-check-framework:*</exclude>
<exclude>commons-configuration:commons-configuration</exclude>
<exclude>commons-el:commons-el</exclude>
<exclude>commons-httpclient:commons-httpclient</exclude>
<exclude>io.netty:*</exclude>
<exclude>javax.servlet:*</exclude>
<exclude>javax.servlet.jsp:jsp-api</exclude>
<exclude>javax.servlet:servlet-api</exclude>
<exclude>net.java.dev.jets3t:jets3t</exclude>
<exclude>org.apache.commons:commons-compress</exclude>
<exclude>org.apache.commons:commons-math</exclude>
<exclude>org.apache.zookeeper:zookeeper</exclude>
<exclude>org.glassfish:*</exclude>
<exlude>org.glassfish.external:*</exlude>
<exclude>org.glassfish.gmbal:*</exclude>
<exclude>org.glassfish.grizzly:*</exclude>
<exclude>org.neo4j:*</exclude>
<exclude>org.mortbay.jetty:jetty-util</exclude>
<exclude>org.mortbay.jetty:jetty</exclude>
<exclude>org.slf4j:slf4j-api</exclude>
<exclude>org.slf4j:slf4j-log4j12</exclude>
<exclude>org.tukaani:*</exclude>
<exclude>tomcat:jasper-compiler</exclude>
<exclude>tomcat:jasper-runtime</exclude>
<exclude>xmlenc:xmlenc</exclude>
<exclude>com.miglayout:miglayout-javafx</exclude>
<exclude>org.codehaus.jackson:jackson-core-asl</exclude>
<exclude>org.codehaus.jackson:jackson-mapper-asl</exclude>
<exclude>org.codehaus.jackson:jackson-jaxrs</exclude>
<exclude>org.codehaus.jackson:jackson-xc</exclude>
</excludes>
</filter>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>META-INF/*.SF</exclude>
<exclude>META-INF/*.DSA</exclude>
<exclude>META-INF/*.RSA</exclude>
</excludes>
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<properties>
<maven.compiler.source>1.8</maven.compiler.source>
<maven.compiler.target>1.8</maven.compiler.target>
</properties>
</project>