merge_probe_sets.yaml

#make sure the final folder (at the end of the path of the output folder)
#matches the final name you'd like to give your probe-set i.e. if final name of
#probeset is DR23KE, the bottom layer folder name needs to be DR23KE and not
#DR23KE_mips or mips_for_DR23KE
output_folder: /nfs/jbailey5/baileyweb/asimkin/tes_2017_mikalayi/miptools/heome96_troubleshooting/HEOME96 #name of new merged probeset

#mip_arms files to build new merged mip_arms from. Every mip_arms file needs to
#have a corresponding call_info.json file in the same folder.
mip_arms_files:
  - /nfs/jbailey5/baileyweb/bailey_share/resources/MIP_project_resources/heome/mip_ids/hi-het-merged_mip_arms_combined
#merged_probe_info_file: probe_info.csv

probe_names_file: /nfs/jbailey5/baileyweb/asimkin/tes_2017_mikalayi/miptools/heome96_troubleshooting/desired_probes.txt #mip names of probes of interest
#(names must match mip_family column of corresponding mip arms files)

#would you like to include only the probes from the probe_seqs file or exclude
#only the probes from the probe_seqs file? Options are 'include' or 'exclude'
include_exclude: include