From 5959a7e5bd4887801eebf90fcc119d686479283d Mon Sep 17 00:00:00 2001 From: Jacob Evarts Date: Wed, 13 Dec 2023 10:43:50 -0800 Subject: [PATCH] Updated naming conventions for consistiency --- .gitignore | 1 + ...c_15.yaml => hemodynamic_0_metric_15.yaml} | 0 ...ric_8.yaml => hemodynamic_0_metric_8.yaml} | 0 ....yaml => hemodynamic_all_metric_15_C.yaml} | 32 +++++++++---------- ...yaml => hemodynamic_all_metric_15_CH.yaml} | 30 ++++++++--------- ...c_15.yaml => topological_0_metric_15.yaml} | 0 ...ric_8.yaml => topological_0_metric_8.yaml} | 0 7 files changed, 32 insertions(+), 31 deletions(-) rename src/conf/cs/{topo_0_metric_15.yaml => hemodynamic_0_metric_15.yaml} (100%) rename src/conf/cs/{topo_0_metric_8.yaml => hemodynamic_0_metric_8.yaml} (100%) rename src/conf/cs/{temporal_all_metric_15_C.yaml => hemodynamic_all_metric_15_C.yaml} (96%) rename src/conf/cs/{temporal_all_metric_15_CH.yaml => hemodynamic_all_metric_15_CH.yaml} (95%) rename src/conf/cs/{naive_0_metric_15.yaml => topological_0_metric_15.yaml} (100%) rename src/conf/cs/{naive_0_metric_8.yaml => topological_0_metric_8.yaml} (100%) diff --git a/.gitignore b/.gitignore index f84375c..bbce7cb 100644 --- a/.gitignore +++ b/.gitignore @@ -8,6 +8,7 @@ plots/ stored_results/ rnn/ variance_formatted/ +overfit/ training_vis.ipynb variance.ipynb diff --git a/src/conf/cs/topo_0_metric_15.yaml b/src/conf/cs/hemodynamic_0_metric_15.yaml similarity index 100% rename from src/conf/cs/topo_0_metric_15.yaml rename to src/conf/cs/hemodynamic_0_metric_15.yaml diff --git a/src/conf/cs/topo_0_metric_8.yaml b/src/conf/cs/hemodynamic_0_metric_8.yaml similarity index 100% rename from src/conf/cs/topo_0_metric_8.yaml rename to src/conf/cs/hemodynamic_0_metric_8.yaml diff --git a/src/conf/cs/temporal_all_metric_15_C.yaml b/src/conf/cs/hemodynamic_all_metric_15_C.yaml similarity index 96% rename from src/conf/cs/temporal_all_metric_15_C.yaml rename to src/conf/cs/hemodynamic_all_metric_15_C.yaml index b41e1b3..fe5e8bd 100644 --- a/src/conf/cs/temporal_all_metric_15_C.yaml +++ b/src/conf/cs/hemodynamic_all_metric_15_C.yaml @@ -5,7 +5,7 @@ defaults: - models/mlp - _self_ experiments: - C_0: + COUPLED-C-0: files: data: C-feature_0.0_metric_15-04032023.csv paths: @@ -13,7 +13,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_0_metric_15_C/ - C_1: + COUPLED-C-1: files: data: C-feature_1.0_metric_15-04032023.csv paths: @@ -21,7 +21,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_1_metric_15_C/ - C_2: + COUPLED-C-2: files: data: C-feature_2.0_metric_15-04032023.csv paths: @@ -29,7 +29,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_2_metric_15_C/ - C_3: + COUPLED-C-3: files: data: C-feature_3.0_metric_15-04032023.csv paths: @@ -37,7 +37,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_3_metric_15_C/ - C_4: + COUPLED-C-4: files: data: C-feature_4.0_metric_15-04032023.csv paths: @@ -45,7 +45,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_4_metric_15_C/ - C_5: + COUPLED-C-5: files: data: C-feature_5.0_metric_15-04032023.csv paths: @@ -53,7 +53,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_5_metric_15_C/ - C_6: + COUPLED-C-6: files: data: C-feature_6.0_metric_15-04032023.csv paths: @@ -61,7 +61,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_6_metric_15_C/ - C_7: + COUPLED-C-7: files: data: C-feature_7.0_metric_15-04032023.csv paths: @@ -69,7 +69,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_7_metric_15_C/ - C_8: + COUPLED-C-8: files: data: C-feature_8.0_metric_15-04032023.csv paths: @@ -77,7 +77,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_8_metric_15_C/ - C_9: + COUPLED-C-9: files: data: C-feature_9.0_metric_15-04032023.csv paths: @@ -85,7 +85,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_9_metric_15_C/ - C_10: + COUPLED-C-10: files: data: C-feature_10.0_metric_15-04032023.csv paths: @@ -93,7 +93,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_10_metric_15_C/ - C_11: + COUPLED-C-11: files: data: C-feature_11.0_metric_15-04032023.csv paths: @@ -101,7 +101,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_11_metric_15_C/ - C_12: + COUPLED-C-12: files: data: C-feature_12.0_metric_15-04032023.csv paths: @@ -109,7 +109,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_12_metric_15_C/ - C_13: + COUPLED-C-13: files: data: C-feature_13.0_metric_15-04032023.csv paths: @@ -117,7 +117,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_13_metric_15_C/ - C_14: + COUPLED-C-14: files: data: C-feature_14.0_metric_15-04032023.csv paths: @@ -125,7 +125,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_14_metric_15_C/ - C_15: + COUPLED-C-15: files: data: C-feature_15.0_metric_15-04032023.csv paths: diff --git a/src/conf/cs/temporal_all_metric_15_CH.yaml b/src/conf/cs/hemodynamic_all_metric_15_CH.yaml similarity index 95% rename from src/conf/cs/temporal_all_metric_15_CH.yaml rename to src/conf/cs/hemodynamic_all_metric_15_CH.yaml index 88d48d2..c177889 100644 --- a/src/conf/cs/temporal_all_metric_15_CH.yaml +++ b/src/conf/cs/hemodynamic_all_metric_15_CH.yaml @@ -5,7 +5,7 @@ defaults: - models/mlp - _self_ experiments: - CH_0: + COUPLED-CHX-0: files: data: CH-feature_0.0_metric_15-04032023.csv paths: @@ -13,7 +13,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_0_metric_15_CH/ - CH_1: + COUPLED-CHX-1: files: data: CH-feature_1.0_metric_15-04032023.csv paths: @@ -21,7 +21,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_1_metric_15_CH/ - CH_2: + COUPLED-CHX-2: files: data: CH-feature_2.0_metric_15-04032023.csv paths: @@ -29,7 +29,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_2_metric_15_CH/ - CH_3: + COUPLED-CHX-3: files: data: CH-feature_3.0_metric_15-04032023.csv paths: @@ -37,7 +37,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_3_metric_15_CH/ - CH_4: + COUPLED-CHX-4: files: data: CH-feature_4.0_metric_15-04032023.csv paths: @@ -53,7 +53,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_5_metric_15_CH/ - CH_6: + COUPLED-CHX-6: files: data: CH-feature_6.0_metric_15-04032023.csv paths: @@ -61,7 +61,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_6_metric_15_CH/ - CH_7: + COUPLED-CHX-7: files: data: CH-feature_7.0_metric_15-04032023.csv paths: @@ -69,7 +69,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_7_metric_15_CH/ - CH_8: + COUPLED-CHX-8: files: data: CH-feature_8.0_metric_15-04032023.csv paths: @@ -77,7 +77,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_8_metric_15_CH/ - CH_9: + CCOUPLED-CHX-9: files: data: CH-feature_9.0_metric_15-04032023.csv paths: @@ -85,7 +85,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_9_metric_15_CH/ - CH_10: + COUPLED-CHX-10: files: data: CH-feature_10.0_metric_15-04032023.csv paths: @@ -93,7 +93,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_10_metric_15_CH/ - CH_11: + COUPLED-CHX-11: files: data: CH-feature_11.0_metric_15-04032023.csv paths: @@ -101,7 +101,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_11_metric_15_CH/ - CH_12: + COUPLED-CHX-12: files: data: CH-feature_12.0_metric_15-04032023.csv paths: @@ -109,7 +109,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_12_metric_15_CH/ - CH_13: + COUPLED-CHX-13: files: data: CH-feature_13.0_metric_15-04032023.csv paths: @@ -117,7 +117,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_13_metric_15_CH/ - CH_14: + COUPLED-CHX-14: files: data: CH-feature_14.0_metric_15-04032023.csv paths: @@ -125,7 +125,7 @@ experiments: data: ${hydra:runtime.cwd}/data/ARCADE/ results: ${hydra:runtime.cwd}/results/ARCADE/topo_14_metric_15_CH/ - CH_15: + COUPLED-CHX-15: files: data: CH-feature_15.0_metric_15-04032023.csv paths: diff --git a/src/conf/cs/naive_0_metric_15.yaml b/src/conf/cs/topological_0_metric_15.yaml similarity index 100% rename from src/conf/cs/naive_0_metric_15.yaml rename to src/conf/cs/topological_0_metric_15.yaml diff --git a/src/conf/cs/naive_0_metric_8.yaml b/src/conf/cs/topological_0_metric_8.yaml similarity index 100% rename from src/conf/cs/naive_0_metric_8.yaml rename to src/conf/cs/topological_0_metric_8.yaml