diff --git a/CHANGELOG.md b/CHANGELOG.md
index 496dabbc..735cdaea 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -44,6 +44,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 * [#211](https://github.com/babylonlabs-io/finality-provider/pull/211) Clean up unused cmd
 * [#214](https://github.com/babylonlabs-io/finality-provider/pull/214) Gradual benchmark
 * [#216](https://github.com/babylonlabs-io/finality-provider/pull/216) Add multiple fpd connecting to one eotsd in e2e tests
+* [#218](https://github.com/babylonlabs-io/finality-provider/pull/218) Prune used merkle proof
 
 ## v0.13.1
 
diff --git a/finality-provider/cmd/fpd/daemon/daemon_commands.go b/finality-provider/cmd/fpd/daemon/daemon_commands.go
index a919c563..3eda12ca 100644
--- a/finality-provider/cmd/fpd/daemon/daemon_commands.go
+++ b/finality-provider/cmd/fpd/daemon/daemon_commands.go
@@ -488,6 +488,66 @@ func runCommandEditFinalityDescription(cmd *cobra.Command, args []string) error
 	return nil
 }
 
+// CommandUnsafePruneMerkleProof prunes merkle proof
+func CommandUnsafePruneMerkleProof() *cobra.Command {
+	var cmd = &cobra.Command{
+		Use:     "unsafe-prune-merkle-proof [eots_pk]",
+		Aliases: []string{"rmp"},
+		Short:   "Prunes merkle proofs up to the specified target height",
+		Long: strings.TrimSpace(`This command will prune all merkle proof up to the target height. The 
+operator of this command should ensure that finality provider has voted, or doesn't have voting power up to the target height.'
+`),
+		Example: fmt.Sprintf(`fpd unsafe-prune-merkle-proof [eots_pk] --daemon-address %s`, defaultFpdDaemonAddress),
+		Args:    cobra.ExactArgs(1),
+		RunE:    runCommandUnsafePruneMerkleProof,
+	}
+	cmd.Flags().String(fpdDaemonAddressFlag, defaultFpdDaemonAddress, "The RPC server address of fpd")
+	cmd.Flags().String(chainIDFlag, "", "The identifier of the consumer chain")
+	cmd.Flags().Uint64(upToHeight, 0, "Target height to prune merkle proofs")
+
+	if err := cmd.MarkFlagRequired(chainIDFlag); err != nil {
+		panic(err)
+	}
+
+	if err := cmd.MarkFlagRequired(upToHeight); err != nil {
+		panic(err)
+	}
+
+	return cmd
+}
+
+func runCommandUnsafePruneMerkleProof(cmd *cobra.Command, args []string) error {
+	fpPk, err := types.NewBIP340PubKeyFromHex(args[0])
+	if err != nil {
+		return err
+	}
+
+	flags := cmd.Flags()
+	daemonAddress, err := flags.GetString(fpdDaemonAddressFlag)
+	if err != nil {
+		return fmt.Errorf("failed to read flag %s: %w", fpdDaemonAddressFlag, err)
+	}
+
+	grpcClient, cleanUp, err := dc.NewFinalityProviderServiceGRpcClient(daemonAddress)
+	if err != nil {
+		return err
+	}
+	defer func() {
+		if err := cleanUp(); err != nil {
+			fmt.Printf("Failed to clean up grpc client: %v\n", err)
+		}
+	}()
+
+	chainID, _ := cmd.Flags().GetString(chainIDFlag)
+	targetHeight, _ := cmd.Flags().GetUint64(upToHeight)
+
+	if err := grpcClient.UnsafeRemoveMerkleProof(cmd.Context(), fpPk, chainID, targetHeight); err != nil {
+		return fmt.Errorf("failed to edit finality provider %v err %w", fpPk.MarshalHex(), err)
+	}
+
+	return nil
+}
+
 func printRespJSON(resp interface{}) {
 	jsonBytes, err := json.MarshalIndent(resp, "", "    ")
 	if err != nil {
diff --git a/finality-provider/cmd/fpd/daemon/flags.go b/finality-provider/cmd/fpd/daemon/flags.go
index 4a343a20..6a1f7965 100644
--- a/finality-provider/cmd/fpd/daemon/flags.go
+++ b/finality-provider/cmd/fpd/daemon/flags.go
@@ -13,6 +13,7 @@ const (
 	signedFlag           = "signed"
 	checkDoubleSignFlag  = "check-double-sign"
 	fromFile             = "from-file"
+	upToHeight           = "up-to-height"
 
 	// flags for description
 	monikerFlag         = "moniker"
diff --git a/finality-provider/cmd/fpd/main.go b/finality-provider/cmd/fpd/main.go
index 8c03b56d..88aee363 100644
--- a/finality-provider/cmd/fpd/main.go
+++ b/finality-provider/cmd/fpd/main.go
@@ -37,7 +37,7 @@ func main() {
 		daemon.CommandInfoFP(), daemon.CommandAddFinalitySig(), daemon.CommandUnjailFP(),
 		daemon.CommandEditFinalityDescription(), daemon.CommandCommitPubRand(),
 		incentivecli.NewWithdrawRewardCmd(), incentivecli.NewSetWithdrawAddressCmd(),
-		version.CommandVersion("fpd"),
+		version.CommandVersion("fpd"), daemon.CommandUnsafePruneMerkleProof(),
 	)
 
 	if err := cmd.Execute(); err != nil {
diff --git a/finality-provider/proto/finality_providers.pb.go b/finality-provider/proto/finality_providers.pb.go
index 2b2d8f40..685da2c7 100644
--- a/finality-provider/proto/finality_providers.pb.go
+++ b/finality-provider/proto/finality_providers.pb.go
@@ -1338,6 +1338,72 @@ func (x *EditFinalityProviderRequest) GetCommission() string {
 	return ""
 }
 
+type RemoveMerkleProofRequest struct {
+	state         protoimpl.MessageState
+	sizeCache     protoimpl.SizeCache
+	unknownFields protoimpl.UnknownFields
+
+	// btc_pk_hex is the hex string of the BTC secp256k1 PK of the finality provider encoded in BIP-340 spec
+	BtcPkHex string `protobuf:"bytes,1,opt,name=btc_pk_hex,json=btcPkHex,proto3" json:"btc_pk_hex,omitempty"`
+	// chain_id is the identifier of the consumer chain
+	ChainId string `protobuf:"bytes,2,opt,name=chain_id,json=chainId,proto3" json:"chain_id,omitempty"`
+	// target_height to to delete all proofs
+	TargetHeight uint64 `protobuf:"varint,3,opt,name=target_height,json=targetHeight,proto3" json:"target_height,omitempty"`
+}
+
+func (x *RemoveMerkleProofRequest) Reset() {
+	*x = RemoveMerkleProofRequest{}
+	if protoimpl.UnsafeEnabled {
+		mi := &file_finality_providers_proto_msgTypes[20]
+		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
+		ms.StoreMessageInfo(mi)
+	}
+}
+
+func (x *RemoveMerkleProofRequest) String() string {
+	return protoimpl.X.MessageStringOf(x)
+}
+
+func (*RemoveMerkleProofRequest) ProtoMessage() {}
+
+func (x *RemoveMerkleProofRequest) ProtoReflect() protoreflect.Message {
+	mi := &file_finality_providers_proto_msgTypes[20]
+	if protoimpl.UnsafeEnabled && x != nil {
+		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
+		if ms.LoadMessageInfo() == nil {
+			ms.StoreMessageInfo(mi)
+		}
+		return ms
+	}
+	return mi.MessageOf(x)
+}
+
+// Deprecated: Use RemoveMerkleProofRequest.ProtoReflect.Descriptor instead.
+func (*RemoveMerkleProofRequest) Descriptor() ([]byte, []int) {
+	return file_finality_providers_proto_rawDescGZIP(), []int{20}
+}
+
+func (x *RemoveMerkleProofRequest) GetBtcPkHex() string {
+	if x != nil {
+		return x.BtcPkHex
+	}
+	return ""
+}
+
+func (x *RemoveMerkleProofRequest) GetChainId() string {
+	if x != nil {
+		return x.ChainId
+	}
+	return ""
+}
+
+func (x *RemoveMerkleProofRequest) GetTargetHeight() uint64 {
+	if x != nil {
+		return x.TargetHeight
+	}
+	return 0
+}
+
 // Define an empty response message
 type EmptyResponse struct {
 	state         protoimpl.MessageState
@@ -1348,7 +1414,7 @@ type EmptyResponse struct {
 func (x *EmptyResponse) Reset() {
 	*x = EmptyResponse{}
 	if protoimpl.UnsafeEnabled {
-		mi := &file_finality_providers_proto_msgTypes[20]
+		mi := &file_finality_providers_proto_msgTypes[21]
 		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
 		ms.StoreMessageInfo(mi)
 	}
@@ -1361,7 +1427,7 @@ func (x *EmptyResponse) String() string {
 func (*EmptyResponse) ProtoMessage() {}
 
 func (x *EmptyResponse) ProtoReflect() protoreflect.Message {
-	mi := &file_finality_providers_proto_msgTypes[20]
+	mi := &file_finality_providers_proto_msgTypes[21]
 	if protoimpl.UnsafeEnabled && x != nil {
 		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
 		if ms.LoadMessageInfo() == nil {
@@ -1374,7 +1440,7 @@ func (x *EmptyResponse) ProtoReflect() protoreflect.Message {
 
 // Deprecated: Use EmptyResponse.ProtoReflect.Descriptor instead.
 func (*EmptyResponse) Descriptor() ([]byte, []int) {
-	return file_finality_providers_proto_rawDescGZIP(), []int{20}
+	return file_finality_providers_proto_rawDescGZIP(), []int{21}
 }
 
 var File_finality_providers_proto protoreflect.FileDescriptor
@@ -1543,66 +1609,79 @@ var file_finality_providers_proto_rawDesc = []byte{
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+	0x70, 0x72, 0x6f, 0x74, 0x6f, 0x33,
 }
 
 var (
@@ -1618,7 +1697,7 @@ func file_finality_providers_proto_rawDescGZIP() []byte {
 }
 
 var file_finality_providers_proto_enumTypes = make([]protoimpl.EnumInfo, 1)
-var file_finality_providers_proto_msgTypes = make([]protoimpl.MessageInfo, 21)
+var file_finality_providers_proto_msgTypes = make([]protoimpl.MessageInfo, 22)
 var file_finality_providers_proto_goTypes = []interface{}{
 	(FinalityProviderStatus)(0),               // 0: proto.FinalityProviderStatus
 	(*GetInfoRequest)(nil),                    // 1: proto.GetInfoRequest
@@ -1641,7 +1720,8 @@ var file_finality_providers_proto_goTypes = []interface{}{
 	(*SignMessageFromChainKeyRequest)(nil),    // 18: proto.SignMessageFromChainKeyRequest
 	(*SignMessageFromChainKeyResponse)(nil),   // 19: proto.SignMessageFromChainKeyResponse
 	(*EditFinalityProviderRequest)(nil),       // 20: proto.EditFinalityProviderRequest
-	(*EmptyResponse)(nil),                     // 21: proto.EmptyResponse
+	(*RemoveMerkleProofRequest)(nil),          // 21: proto.RemoveMerkleProofRequest
+	(*EmptyResponse)(nil),                     // 22: proto.EmptyResponse
 }
 var file_finality_providers_proto_depIdxs = []int32{
 	14, // 0: proto.CreateFinalityProviderResponse.finality_provider:type_name -> proto.FinalityProviderInfo
@@ -1657,15 +1737,17 @@ var file_finality_providers_proto_depIdxs = []int32{
 	9,  // 10: proto.FinalityProviders.QueryFinalityProvider:input_type -> proto.QueryFinalityProviderRequest
 	11, // 11: proto.FinalityProviders.QueryFinalityProviderList:input_type -> proto.QueryFinalityProviderListRequest
 	20, // 12: proto.FinalityProviders.EditFinalityProvider:input_type -> proto.EditFinalityProviderRequest
-	2,  // 13: proto.FinalityProviders.GetInfo:output_type -> proto.GetInfoResponse
-	4,  // 14: proto.FinalityProviders.CreateFinalityProvider:output_type -> proto.CreateFinalityProviderResponse
-	6,  // 15: proto.FinalityProviders.AddFinalitySignature:output_type -> proto.AddFinalitySignatureResponse
-	8,  // 16: proto.FinalityProviders.UnjailFinalityProvider:output_type -> proto.UnjailFinalityProviderResponse
-	10, // 17: proto.FinalityProviders.QueryFinalityProvider:output_type -> proto.QueryFinalityProviderResponse
-	12, // 18: proto.FinalityProviders.QueryFinalityProviderList:output_type -> proto.QueryFinalityProviderListResponse
-	21, // 19: proto.FinalityProviders.EditFinalityProvider:output_type -> proto.EmptyResponse
-	13, // [13:20] is the sub-list for method output_type
-	6,  // [6:13] is the sub-list for method input_type
+	21, // 13: proto.FinalityProviders.UnsafeRemoveMerkleProof:input_type -> proto.RemoveMerkleProofRequest
+	2,  // 14: proto.FinalityProviders.GetInfo:output_type -> proto.GetInfoResponse
+	4,  // 15: proto.FinalityProviders.CreateFinalityProvider:output_type -> proto.CreateFinalityProviderResponse
+	6,  // 16: proto.FinalityProviders.AddFinalitySignature:output_type -> proto.AddFinalitySignatureResponse
+	8,  // 17: proto.FinalityProviders.UnjailFinalityProvider:output_type -> proto.UnjailFinalityProviderResponse
+	10, // 18: proto.FinalityProviders.QueryFinalityProvider:output_type -> proto.QueryFinalityProviderResponse
+	12, // 19: proto.FinalityProviders.QueryFinalityProviderList:output_type -> proto.QueryFinalityProviderListResponse
+	22, // 20: proto.FinalityProviders.EditFinalityProvider:output_type -> proto.EmptyResponse
+	22, // 21: proto.FinalityProviders.UnsafeRemoveMerkleProof:output_type -> proto.EmptyResponse
+	14, // [14:22] is the sub-list for method output_type
+	6,  // [6:14] is the sub-list for method input_type
 	6,  // [6:6] is the sub-list for extension type_name
 	6,  // [6:6] is the sub-list for extension extendee
 	0,  // [0:6] is the sub-list for field type_name
@@ -1918,6 +2000,18 @@ func file_finality_providers_proto_init() {
 			}
 		}
 		file_finality_providers_proto_msgTypes[20].Exporter = func(v interface{}, i int) interface{} {
+			switch v := v.(*RemoveMerkleProofRequest); i {
+			case 0:
+				return &v.state
+			case 1:
+				return &v.sizeCache
+			case 2:
+				return &v.unknownFields
+			default:
+				return nil
+			}
+		}
+		file_finality_providers_proto_msgTypes[21].Exporter = func(v interface{}, i int) interface{} {
 			switch v := v.(*EmptyResponse); i {
 			case 0:
 				return &v.state
@@ -1936,7 +2030,7 @@ func file_finality_providers_proto_init() {
 			GoPackagePath: reflect.TypeOf(x{}).PkgPath(),
 			RawDescriptor: file_finality_providers_proto_rawDesc,
 			NumEnums:      1,
-			NumMessages:   21,
+			NumMessages:   22,
 			NumExtensions: 0,
 			NumServices:   1,
 		},
diff --git a/finality-provider/proto/finality_providers.proto b/finality-provider/proto/finality_providers.proto
index 533c0acf..87e0704b 100644
--- a/finality-provider/proto/finality_providers.proto
+++ b/finality-provider/proto/finality_providers.proto
@@ -35,6 +35,9 @@ service FinalityProviders {
 
     // EditFinalityProvider edits finality provider
     rpc EditFinalityProvider (EditFinalityProviderRequest) returns (EmptyResponse);
+
+    // UnsafeRemoveMerkleProof removes merkle proofs up to target height
+    rpc UnsafeRemoveMerkleProof (RemoveMerkleProofRequest) returns (EmptyResponse);
 }
 
 message GetInfoRequest {
@@ -243,5 +246,14 @@ message EditFinalityProviderRequest {
     ];
 }
 
+message RemoveMerkleProofRequest {
+    // btc_pk_hex is the hex string of the BTC secp256k1 PK of the finality provider encoded in BIP-340 spec
+    string btc_pk_hex = 1;
+    // chain_id is the identifier of the consumer chain
+    string chain_id = 2;
+    // target_height to to delete all proofs
+    uint64 target_height = 3;
+}
+
 // Define an empty response message
 message EmptyResponse {}
diff --git a/finality-provider/proto/finality_providers_grpc.pb.go b/finality-provider/proto/finality_providers_grpc.pb.go
index ca523db6..c8726775 100644
--- a/finality-provider/proto/finality_providers_grpc.pb.go
+++ b/finality-provider/proto/finality_providers_grpc.pb.go
@@ -26,6 +26,7 @@ const (
 	FinalityProviders_QueryFinalityProvider_FullMethodName     = "/proto.FinalityProviders/QueryFinalityProvider"
 	FinalityProviders_QueryFinalityProviderList_FullMethodName = "/proto.FinalityProviders/QueryFinalityProviderList"
 	FinalityProviders_EditFinalityProvider_FullMethodName      = "/proto.FinalityProviders/EditFinalityProvider"
+	FinalityProviders_UnsafeRemoveMerkleProof_FullMethodName   = "/proto.FinalityProviders/UnsafeRemoveMerkleProof"
 )
 
 // FinalityProvidersClient is the client API for FinalityProviders service.
@@ -48,6 +49,8 @@ type FinalityProvidersClient interface {
 	QueryFinalityProviderList(ctx context.Context, in *QueryFinalityProviderListRequest, opts ...grpc.CallOption) (*QueryFinalityProviderListResponse, error)
 	// EditFinalityProvider edits finality provider
 	EditFinalityProvider(ctx context.Context, in *EditFinalityProviderRequest, opts ...grpc.CallOption) (*EmptyResponse, error)
+	// UnsafeRemoveMerkleProof removes merkle proofs up to target height
+	UnsafeRemoveMerkleProof(ctx context.Context, in *RemoveMerkleProofRequest, opts ...grpc.CallOption) (*EmptyResponse, error)
 }
 
 type finalityProvidersClient struct {
@@ -121,6 +124,15 @@ func (c *finalityProvidersClient) EditFinalityProvider(ctx context.Context, in *
 	return out, nil
 }
 
+func (c *finalityProvidersClient) UnsafeRemoveMerkleProof(ctx context.Context, in *RemoveMerkleProofRequest, opts ...grpc.CallOption) (*EmptyResponse, error) {
+	out := new(EmptyResponse)
+	err := c.cc.Invoke(ctx, FinalityProviders_UnsafeRemoveMerkleProof_FullMethodName, in, out, opts...)
+	if err != nil {
+		return nil, err
+	}
+	return out, nil
+}
+
 // FinalityProvidersServer is the server API for FinalityProviders service.
 // All implementations must embed UnimplementedFinalityProvidersServer
 // for forward compatibility
@@ -141,6 +153,8 @@ type FinalityProvidersServer interface {
 	QueryFinalityProviderList(context.Context, *QueryFinalityProviderListRequest) (*QueryFinalityProviderListResponse, error)
 	// EditFinalityProvider edits finality provider
 	EditFinalityProvider(context.Context, *EditFinalityProviderRequest) (*EmptyResponse, error)
+	// UnsafeRemoveMerkleProof removes merkle proofs up to target height
+	UnsafeRemoveMerkleProof(context.Context, *RemoveMerkleProofRequest) (*EmptyResponse, error)
 	mustEmbedUnimplementedFinalityProvidersServer()
 }
 
@@ -169,6 +183,9 @@ func (UnimplementedFinalityProvidersServer) QueryFinalityProviderList(context.Co
 func (UnimplementedFinalityProvidersServer) EditFinalityProvider(context.Context, *EditFinalityProviderRequest) (*EmptyResponse, error) {
 	return nil, status.Errorf(codes.Unimplemented, "method EditFinalityProvider not implemented")
 }
+func (UnimplementedFinalityProvidersServer) UnsafeRemoveMerkleProof(context.Context, *RemoveMerkleProofRequest) (*EmptyResponse, error) {
+	return nil, status.Errorf(codes.Unimplemented, "method UnsafeRemoveMerkleProof not implemented")
+}
 func (UnimplementedFinalityProvidersServer) mustEmbedUnimplementedFinalityProvidersServer() {}
 
 // UnsafeFinalityProvidersServer may be embedded to opt out of forward compatibility for this service.
@@ -308,6 +325,24 @@ func _FinalityProviders_EditFinalityProvider_Handler(srv interface{}, ctx contex
 	return interceptor(ctx, in, info, handler)
 }
 
+func _FinalityProviders_UnsafeRemoveMerkleProof_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
+	in := new(RemoveMerkleProofRequest)
+	if err := dec(in); err != nil {
+		return nil, err
+	}
+	if interceptor == nil {
+		return srv.(FinalityProvidersServer).UnsafeRemoveMerkleProof(ctx, in)
+	}
+	info := &grpc.UnaryServerInfo{
+		Server:     srv,
+		FullMethod: FinalityProviders_UnsafeRemoveMerkleProof_FullMethodName,
+	}
+	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
+		return srv.(FinalityProvidersServer).UnsafeRemoveMerkleProof(ctx, req.(*RemoveMerkleProofRequest))
+	}
+	return interceptor(ctx, in, info, handler)
+}
+
 // FinalityProviders_ServiceDesc is the grpc.ServiceDesc for FinalityProviders service.
 // It's only intended for direct use with grpc.RegisterService,
 // and not to be introspected or modified (even as a copy)
@@ -343,6 +378,10 @@ var FinalityProviders_ServiceDesc = grpc.ServiceDesc{
 			MethodName: "EditFinalityProvider",
 			Handler:    _FinalityProviders_EditFinalityProvider_Handler,
 		},
+		{
+			MethodName: "UnsafeRemoveMerkleProof",
+			Handler:    _FinalityProviders_UnsafeRemoveMerkleProof_Handler,
+		},
 	},
 	Streams:  []grpc.StreamDesc{},
 	Metadata: "finality_providers.proto",
diff --git a/finality-provider/service/benchmark_helper.go b/finality-provider/service/benchmark_helper.go
index 55601fc8..092312d3 100644
--- a/finality-provider/service/benchmark_helper.go
+++ b/finality-provider/service/benchmark_helper.go
@@ -66,7 +66,7 @@ func (fp *FinalityProviderInstance) commitPubRandPairsWithTiming(startHeight uin
 
 	// Measure addPubRandProofList
 	addProofStart := time.Now()
-	if err := fp.pubRandState.addPubRandProofList(pubRandList, proofList); err != nil {
+	if err := fp.pubRandState.addPubRandProofList(fp.GetChainID(), fp.btcPk.MustMarshal(), startHeight, uint64(fp.cfg.NumPubRand), proofList); err != nil {
 		return nil, timing, fmt.Errorf("failed to save public randomness to DB: %w", err)
 	}
 	timing.AddPubRandProofListTime = time.Since(addProofStart)
diff --git a/finality-provider/service/client/rpcclient.go b/finality-provider/service/client/rpcclient.go
index fc3ea579..68c2a1c0 100644
--- a/finality-provider/service/client/rpcclient.go
+++ b/finality-provider/service/client/rpcclient.go
@@ -141,3 +141,15 @@ func (c *FinalityProviderServiceGRpcClient) EditFinalityProvider(
 
 	return nil
 }
+
+// UnsafeRemoveMerkleProof - remove all proofs up to target height
+func (c *FinalityProviderServiceGRpcClient) UnsafeRemoveMerkleProof(
+	ctx context.Context, fpPk *bbntypes.BIP340PubKey, chainID string, targetHeight uint64) error {
+	req := &proto.RemoveMerkleProofRequest{BtcPkHex: fpPk.MarshalHex(), ChainId: chainID, TargetHeight: targetHeight}
+	_, err := c.client.UnsafeRemoveMerkleProof(ctx, req)
+	if err != nil {
+		return err
+	}
+
+	return nil
+}
diff --git a/finality-provider/service/fp_instance.go b/finality-provider/service/fp_instance.go
index 911f700b..d1e22c1e 100644
--- a/finality-provider/service/fp_instance.go
+++ b/finality-provider/service/fp_instance.go
@@ -526,7 +526,7 @@ func (fp *FinalityProviderInstance) commitPubRandPairs(startHeight uint64) (*typ
 	commitment, proofList := types.GetPubRandCommitAndProofs(pubRandList)
 
 	// store them to database
-	if err := fp.pubRandState.addPubRandProofList(pubRandList, proofList); err != nil {
+	if err := fp.pubRandState.addPubRandProofList(fp.btcPk.MustMarshal(), fp.GetChainID(), startHeight, uint64(fp.cfg.NumPubRand), proofList); err != nil {
 		return nil, fmt.Errorf("failed to save public randomness to DB: %w", err)
 	}
 
@@ -638,14 +638,20 @@ func (fp *FinalityProviderInstance) SubmitBatchFinalitySignatures(blocks []*type
 	}
 
 	// get public randomness list
+	numPubRand := len(blocks)
 	// #nosec G115 -- performed the conversion check above
-	prList, err := fp.getPubRandList(blocks[0].Height, uint32(len(blocks)))
+	prList, err := fp.getPubRandList(blocks[0].Height, uint32(numPubRand))
 	if err != nil {
 		return nil, fmt.Errorf("failed to get public randomness list: %w", err)
 	}
 	// get proof list
 	// TODO: how to recover upon having an error in getPubRandProofList?
-	proofBytesList, err := fp.pubRandState.getPubRandProofList(prList)
+	proofBytesList, err := fp.pubRandState.getPubRandProofList(
+		fp.btcPk.MustMarshal(),
+		fp.GetChainID(),
+		blocks[0].Height,
+		uint64(numPubRand),
+	)
 	if err != nil {
 		return nil, fmt.Errorf("failed to get public randomness inclusion proof list: %w", err)
 	}
@@ -693,7 +699,7 @@ func (fp *FinalityProviderInstance) TestSubmitFinalitySignatureAndExtractPrivKey
 	pubRand := prList[0]
 
 	// get proof
-	proofBytes, err := fp.pubRandState.getPubRandProof(pubRand)
+	proofBytes, err := fp.pubRandState.getPubRandProof(fp.btcPk.MustMarshal(), fp.GetChainID(), b.Height)
 	if err != nil {
 		return nil, nil, fmt.Errorf("failed to get public randomness inclusion proof: %w", err)
 	}
diff --git a/finality-provider/service/pub_rand_store_adapter.go b/finality-provider/service/pub_rand_store_adapter.go
index b4a1a4a8..3ab30891 100644
--- a/finality-provider/service/pub_rand_store_adapter.go
+++ b/finality-provider/service/pub_rand_store_adapter.go
@@ -2,7 +2,6 @@ package service
 
 import (
 	"github.com/babylonlabs-io/finality-provider/finality-provider/store"
-	"github.com/btcsuite/btcd/btcec/v2"
 	"github.com/cometbft/cometbft/crypto/merkle"
 )
 
@@ -15,16 +14,16 @@ func newPubRandState(s *store.PubRandProofStore) *pubRandState {
 }
 
 func (st *pubRandState) addPubRandProofList(
-	pubRandList []*btcec.FieldVal,
+	pk, chainID []byte, height uint64, numPubRand uint64,
 	proofList []*merkle.Proof,
 ) error {
-	return st.s.AddPubRandProofList(pubRandList, proofList)
+	return st.s.AddPubRandProofList(chainID, pk, height, numPubRand, proofList)
 }
 
-func (st *pubRandState) getPubRandProof(pubRand *btcec.FieldVal) ([]byte, error) {
-	return st.s.GetPubRandProof(pubRand)
+func (st *pubRandState) getPubRandProof(pk, chainID []byte, height uint64) ([]byte, error) {
+	return st.s.GetPubRandProof(chainID, pk, height)
 }
 
-func (st *pubRandState) getPubRandProofList(pubRandList []*btcec.FieldVal) ([][]byte, error) {
-	return st.s.GetPubRandProofList(pubRandList)
+func (st *pubRandState) getPubRandProofList(pk, chainID []byte, height uint64, numPubRand uint64) ([][]byte, error) {
+	return st.s.GetPubRandProofList(chainID, pk, height, numPubRand)
 }
diff --git a/finality-provider/service/rpcserver.go b/finality-provider/service/rpcserver.go
index 580bfbea..502780f3 100644
--- a/finality-provider/service/rpcserver.go
+++ b/finality-provider/service/rpcserver.go
@@ -264,6 +264,20 @@ func (r *rpcServer) QueryFinalityProviderList(_ context.Context, _ *proto.QueryF
 	return &proto.QueryFinalityProviderListResponse{FinalityProviders: fps}, nil
 }
 
+// UnsafeRemoveMerkleProof - removes proofs up to target height
+func (r *rpcServer) UnsafeRemoveMerkleProof(_ context.Context, req *proto.RemoveMerkleProofRequest) (*proto.EmptyResponse, error) {
+	fpPk, err := parseEotsPk(req.BtcPkHex)
+	if err != nil {
+		return nil, err
+	}
+
+	if err := r.app.pubRandStore.RemovePubRandProofList([]byte(req.ChainId), fpPk.MustMarshal(), req.TargetHeight); err != nil {
+		return nil, err
+	}
+
+	return nil, nil
+}
+
 func parseEotsPk(eotsPkHex string) (*bbntypes.BIP340PubKey, error) {
 	if eotsPkHex == "" {
 		return nil, fmt.Errorf("eots-pk cannot be empty")
diff --git a/finality-provider/store/pub_rand.go b/finality-provider/store/pub_rand.go
index 157db821..51fa45b6 100644
--- a/finality-provider/store/pub_rand.go
+++ b/finality-provider/store/pub_rand.go
@@ -1,9 +1,12 @@
 package store
 
 import (
+	"bytes"
 	"fmt"
 
-	"github.com/btcsuite/btcd/btcec/v2"
+	"github.com/btcsuite/btcwallet/walletdb"
+	sdk "github.com/cosmos/cosmos-sdk/types"
+
 	"github.com/cometbft/cometbft/crypto/merkle"
 	"github.com/lightningnetwork/lnd/kvdb"
 )
@@ -34,20 +37,56 @@ func (s *PubRandProofStore) initBuckets() error {
 	})
 }
 
+// getKey key is (chainID || pk || height)
+func getKey(chainID, pk []byte, height uint64) []byte {
+	// Convert height to bytes
+	heightBytes := sdk.Uint64ToBigEndian(height)
+
+	// Concatenate all components to create the key
+	key := make([]byte, 0, len(pk)+len(chainID)+len(heightBytes))
+	key = append(key, chainID...)
+	key = append(key, pk...)
+	key = append(key, heightBytes...)
+
+	return key
+}
+
+func getPrefixKey(chainID, pk []byte) []byte {
+	// Concatenate chainID and pk to form the prefix
+	prefix := make([]byte, 0, len(chainID)+len(pk))
+	prefix = append(prefix, chainID...)
+	prefix = append(prefix, pk...)
+
+	return prefix
+}
+
+func buildKeys(chainID, pk []byte, height uint64, num uint64) [][]byte {
+	keys := make([][]byte, 0, num)
+
+	for i := uint64(0); i < num; i++ {
+		key := getKey(chainID, pk, height+i)
+		keys = append(keys, key)
+	}
+
+	return keys
+}
+
 func (s *PubRandProofStore) AddPubRandProofList(
-	pubRandList []*btcec.FieldVal,
+	chainID []byte,
+	pk []byte,
+	height uint64,
+	numPubRand uint64,
 	proofList []*merkle.Proof,
 ) error {
-	if len(pubRandList) != len(proofList) {
+	keys := buildKeys(chainID, pk, height, numPubRand)
+
+	if len(keys) != len(proofList) {
 		return fmt.Errorf("the number of public randomness is not same as the number of proofs")
 	}
 
-	pubRandBytesList := [][]byte{}
-	proofBytesList := [][]byte{}
-	for i := range pubRandList {
-		pubRandBytes := *pubRandList[i].Bytes()
-		pubRandBytesList = append(pubRandBytesList, pubRandBytes[:])
-		proofBytes, err := proofList[i].ToProto().Marshal()
+	var proofBytesList [][]byte
+	for _, proof := range proofList {
+		proofBytes, err := proof.ToProto().Marshal()
 		if err != nil {
 			return fmt.Errorf("invalid proof: %w", err)
 		}
@@ -60,13 +99,13 @@ func (s *PubRandProofStore) AddPubRandProofList(
 			return ErrCorruptedPubRandProofDB
 		}
 
-		for i := range pubRandBytesList {
+		for i, key := range keys {
 			// skip if already committed
-			if bucket.Get(pubRandBytesList[i]) != nil {
+			if bucket.Get(key) != nil {
 				continue
 			}
 			// set to DB
-			if err := bucket.Put(pubRandBytesList[i], proofBytesList[i]); err != nil {
+			if err := bucket.Put(key, proofBytesList[i]); err != nil {
 				return err
 			}
 		}
@@ -75,8 +114,8 @@ func (s *PubRandProofStore) AddPubRandProofList(
 	})
 }
 
-func (s *PubRandProofStore) GetPubRandProof(pubRand *btcec.FieldVal) ([]byte, error) {
-	pubRandBytes := *pubRand.Bytes()
+func (s *PubRandProofStore) GetPubRandProof(chainID []byte, pk []byte, height uint64) ([]byte, error) {
+	key := getKey(chainID, pk, height)
 	var proofBytes []byte
 
 	err := s.db.View(func(tx kvdb.RTx) error {
@@ -85,7 +124,7 @@ func (s *PubRandProofStore) GetPubRandProof(pubRand *btcec.FieldVal) ([]byte, er
 			return ErrCorruptedPubRandProofDB
 		}
 
-		proofBytes = bucket.Get(pubRandBytes[:])
+		proofBytes = bucket.Get(key)
 		if proofBytes == nil {
 			return ErrPubRandProofNotFound
 		}
@@ -100,14 +139,14 @@ func (s *PubRandProofStore) GetPubRandProof(pubRand *btcec.FieldVal) ([]byte, er
 	return proofBytes, nil
 }
 
-func (s *PubRandProofStore) GetPubRandProofList(pubRandList []*btcec.FieldVal) ([][]byte, error) {
-	pubRandBytesList := [][]byte{}
-	for i := range pubRandList {
-		pubRandBytes := *pubRandList[i].Bytes()
-		pubRandBytesList = append(pubRandBytesList, pubRandBytes[:])
-	}
+func (s *PubRandProofStore) GetPubRandProofList(chainID []byte,
+	pk []byte,
+	height uint64,
+	numPubRand uint64,
+) ([][]byte, error) {
+	keys := buildKeys(chainID, pk, height, numPubRand)
 
-	proofBytesList := [][]byte{}
+	var proofBytesList [][]byte
 
 	err := s.db.View(func(tx kvdb.RTx) error {
 		bucket := tx.ReadBucket(pubRandProofBucketName)
@@ -115,8 +154,8 @@ func (s *PubRandProofStore) GetPubRandProofList(pubRandList []*btcec.FieldVal) (
 			return ErrCorruptedPubRandProofDB
 		}
 
-		for i := range pubRandBytesList {
-			proofBytes := bucket.Get(pubRandBytesList[i])
+		for _, key := range keys {
+			proofBytes := bucket.Get(key)
 			if proofBytes == nil {
 				return ErrPubRandProofNotFound
 			}
@@ -132,3 +171,38 @@ func (s *PubRandProofStore) GetPubRandProofList(pubRandList []*btcec.FieldVal) (
 
 	return proofBytesList, nil
 }
+
+// RemovePubRandProofList removes all proofs up to the target height
+func (s *PubRandProofStore) RemovePubRandProofList(chainID []byte, pk []byte, targetHeight uint64) error {
+	prefix := getPrefixKey(chainID, pk)
+
+	err := s.db.Update(func(tx walletdb.ReadWriteTx) error {
+		bucket := tx.ReadWriteBucket(pubRandProofBucketName)
+		if bucket == nil {
+			return walletdb.ErrBucketNotFound
+		}
+
+		cursor := bucket.ReadWriteCursor()
+
+		for k, _ := cursor.Seek(prefix); k != nil && bytes.HasPrefix(k, prefix); k, _ = cursor.Next() {
+			heightBytes := k[len(k)-8:]
+			height := sdk.BigEndianToUint64(heightBytes)
+
+			// no need to keep iterating, keys are sorted in lexicographical order upon insert
+			if height > targetHeight {
+				break
+			}
+
+			if err := cursor.Delete(); err != nil {
+				return err
+			}
+		}
+		return nil
+	}, func() {})
+
+	if err != nil {
+		return err
+	}
+
+	return nil
+}
diff --git a/finality-provider/store/pub_rand_test.go b/finality-provider/store/pub_rand_test.go
new file mode 100644
index 00000000..5090bbbf
--- /dev/null
+++ b/finality-provider/store/pub_rand_test.go
@@ -0,0 +1,50 @@
+package store_test
+
+import (
+	"github.com/babylonlabs-io/babylon/testutil/datagen"
+	"github.com/babylonlabs-io/finality-provider/finality-provider/config"
+	"github.com/babylonlabs-io/finality-provider/finality-provider/store"
+	"github.com/babylonlabs-io/finality-provider/testutil"
+	"github.com/stretchr/testify/require"
+	"math/rand"
+	"testing"
+)
+
+// FuzzRemoveMerkleProof removal of proofs
+func FuzzRemoveMerkleProof(f *testing.F) {
+	testutil.AddRandomSeedsToFuzzer(f, 10)
+	f.Fuzz(func(t *testing.T, seed int64) {
+		t.Parallel()
+		r := rand.New(rand.NewSource(seed))
+
+		homePath := t.TempDir()
+		cfg := config.DefaultDBConfigWithHomePath(homePath)
+
+		db, err := cfg.GetDBBackend()
+		require.NoError(t, err)
+		vs, err := store.NewPubRandProofStore(db)
+		require.NoError(t, err)
+
+		numPubRand := uint64(r.Intn(1000))
+		chainID := []byte("test-chain")
+		rl, err := datagen.GenRandomPubRandList(r, numPubRand)
+		require.NoError(t, err)
+		fp := testutil.GenRandomFinalityProvider(r, t)
+
+		defer func() {
+			err := db.Close()
+			require.NoError(t, err)
+		}()
+
+		startHeight := uint64(1)
+		err = vs.AddPubRandProofList(chainID, fp.GetBIP340BTCPK().MustMarshal(), startHeight, numPubRand, rl.ProofList)
+		require.NoError(t, err)
+
+		targetHeight := uint64(r.Intn(1000))
+		err = vs.RemovePubRandProofList(chainID, fp.GetBIP340BTCPK().MustMarshal(), targetHeight)
+		require.NoError(t, err)
+
+		_, err = vs.GetPubRandProofList(chainID, fp.GetBIP340BTCPK().MustMarshal(), startHeight, targetHeight)
+		require.ErrorIs(t, err, store.ErrPubRandProofNotFound)
+	})
+}
diff --git a/itest/e2e_test.go b/itest/e2e_test.go
index 08525980..01b8bf0f 100644
--- a/itest/e2e_test.go
+++ b/itest/e2e_test.go
@@ -1,11 +1,10 @@
-//go:build e2e
-// +build e2e
-
 package e2etest
 
 import (
 	"encoding/json"
+	"errors"
 	"fmt"
+	"github.com/babylonlabs-io/finality-provider/finality-provider/store"
 	"log"
 	"math/rand"
 	"os"
@@ -326,3 +325,30 @@ func TestFinalityProviderCreateCmd(t *testing.T) {
 	require.NoError(t, err)
 	require.NotNil(t, fp)
 }
+
+func TestRemoveMerkleProofsCmd(t *testing.T) {
+	tm, fps := StartManagerWithFinalityProvider(t, 1)
+	defer tm.Stop(t)
+
+	fpIns := fps[0]
+
+	tm.WaitForFpPubRandTimestamped(t, fps[0])
+	cmd := daemon.CommandUnsafePruneMerkleProof()
+
+	cmd.SetArgs([]string{
+		fpIns.GetBtcPkHex(),
+		"--daemon-address=" + fpIns.GetConfig().RPCListener,
+		"--up-to-height=100",
+		"--chain-id=" + testChainID,
+	})
+
+	err := cmd.Execute()
+	require.NoError(t, err)
+
+	require.Eventually(t, func() bool {
+		_, err := tm.Fps[0].GetPubRandProofStore().
+			GetPubRandProof(fpIns.GetChainID(), fpIns.GetBtcPkBIP340().MustMarshal(), 99)
+
+		return errors.Is(err, store.ErrPubRandProofNotFound)
+	}, eventuallyWaitTimeOut, eventuallyPollTime)
+}