koala genome assembly files

[ecpierce]

Hi!

This is such a cool dataset. Really appreciate you making it available.

I am trying to work with the set of 430 koala genomes. Are there available assemblies for the genomes? I see the raw data and the alignment files (which I assume are alignments to the reference genome?), but am wondering if assemblies already exist, as they would be much easier to work with for what I want to do.

Thanks!
Emily

[awgg-lab]

Hi Emily Thank you for your request and apologies for the delayed response – this email address is not often viewed. We have released the raw data and alignment files but as everyone wishes to undertake different analyses using different samples there is no generic joint genotyping file – you will need to undertake this analysis yourself. As a matter of interest – what are you looking to do with the genomes? Best Carolyn From: Emily Weiss ***@***.***> Sent: Thursday, 14 September 2023 3:44 AM To: awgg-lab/australasiangenomes ***@***.***> Cc: Subscribed ***@***.***> Subject: [awgg-lab/australasiangenomes] koala genome assembly files (Issue #4) Hi! This is such a cool dataset. Really appreciate you making it available. I am trying to work with the set of 430 koala genomes. Are there available assemblies for the genomes? I see the raw data and the alignment files (which I assume are alignments to the reference genome?), but am wondering if assemblies already exist, as they would be much easier to work with for what I want to do. Thanks! Emily — Reply to this email directly, view it on GitHub<#4>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/APBIXHGR53ZX52VFPTTMIQLX2HWGHANCNFSM6AAAAAA4WZTYSY>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.******@***.***>>