From 01c488aeba1bd58ed158d41901e778607bb5deb7 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Fri, 25 Oct 2024 15:44:15 +0200
Subject: [PATCH 01/38] ci: using uv to setup python and install dependencies

---
 .github/workflows/tests.yaml | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 0ec1b3ed..d2b105e1 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -25,12 +25,14 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4
-      - run: pipx install poetry
-      - uses: actions/setup-python@v5
+      - name: install the latest version uv
+        uses: astral-sh/setup-uv@v3
         with:
-          python-version: ${{ matrix.python-version }}
-          cache: 'poetry'
-          cache-dependency-path: '**/pyproject.toml'
-      - run: poetry install
-      - run: poetry run pytest -m ""  # Run all markers
+          version: latest
+      - name: create virtual environment
+        run: uv venv --python ${{ matrix.python-version }}
+      - name: Install
+        run: uv pip install ".[dev]"
+      - name: Run tests
+        run: uv run pytest -m ""  # Run all markers
 

From 9ef38d1f1b005907a284f5ec1feb8ce2ccb7c9a4 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Fri, 25 Oct 2024 15:48:17 +0200
Subject: [PATCH 02/38] ci: using uv to setup python and install dependencies

---
 .github/workflows/tests.yaml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index d2b105e1..0480f96c 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -33,6 +33,8 @@ jobs:
         run: uv venv --python ${{ matrix.python-version }}
       - name: Install
         run: uv pip install ".[dev]"
+      - name: Activate venv
+        run: source .venv/bin/activate
       - name: Run tests
-        run: uv run pytest -m ""  # Run all markers
+        run: python -m pytest -m ""  # Run all markers
 

From de2cd3bf6696345163a1b7195188e02edf11b246 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Fri, 25 Oct 2024 15:54:14 +0200
Subject: [PATCH 03/38] ci: using uv to setup python and install dependencies

---
 .github/workflows/tests.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 0480f96c..4c3b1c18 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -36,5 +36,5 @@ jobs:
       - name: Activate venv
         run: source .venv/bin/activate
       - name: Run tests
-        run: python -m pytest -m ""  # Run all markers
+        run: uv run python -m pytest -m ""  # Run all markers
 

From 3523fc2ca9ea29b44c7abc20f8be278bdc3f4dd4 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Fri, 25 Oct 2024 16:52:45 +0200
Subject: [PATCH 04/38] chore: moving from poetry-based pyproject.toml to
 PEP508-style

---
 .gitignore     |   5 +-
 pyproject.toml | 129 +++++++++++++++++++++++++++----------------------
 2 files changed, 76 insertions(+), 58 deletions(-)

diff --git a/.gitignore b/.gitignore
index 81642d3e..a6151f89 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,7 @@
-#False Python
+# build files
+*.egg-info
+
+# False Python
 __pycache__
 dist
 
diff --git a/pyproject.toml b/pyproject.toml
index d86c9cf5..5f1fc0ab 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,27 +1,24 @@
-[tool.poetry]
+[project]
 name = "neural-pipeline-search"
 version = "v0.12.2"
 description = "Neural Pipeline Search helps deep learning experts find the best neural pipeline."
 authors = [
-    "Danny Stoll <stolld@cs.uni-freiburg.de>",
-    "Neeratyoy Mallik <mallik@cs.uni-freiburg.de>",
-    "Simon Schrodi",
-    "Eddie Bergman",
-    "Maciej Janowski",
-    "Samir Garibov",
-    "Tarek Abou Chakra",
-    "Daniel Rogalla",
-    "Carl Hvarfner",
-    "Binxin Ru",
-    "Nils Kober",
-    "Théophane Vallaeys",
-    "Frank Hutter",
+    { name = "Danny Stoll", email = "stolld@cs.uni-freiburg.de" },
+    { name = "Neeratyoy Mallik", email = "mallik@cs.uni-freiburg.de" },
+    { name = "Simon Schrodi" },
+    { name = "Eddie Bergman" },
+    { name = "Maciej Janowski" },
+    { name = "Samir Garibov" },
+    { name = "Tarek Abou Chakra" },
+    { name = "Daniel Rogalla" },
+    { name = "Carl Hvarfner" },
+    { name = "Binxin Ru" },
+    { name = "Nils Kober" },
+    { name = "Théophane Vallaeys" },
+    { name = "Frank Hutter" },
 ]
 readme = "README.md"
-license = "Apache-2.0"
-homepage = "https://github.com/automl/neps"
-repository = "https://github.com/automl/neps"
-documentation = "https://automl.github.io/neps/"
+license = { file = "LICENSE" }
 keywords = [
     "Neural Pipeline Search",
     "Neural Architecture Search",
@@ -31,7 +28,7 @@ keywords = [
 classifiers = [
   "Development Status :: 4 - Beta",
   "Intended Audience :: Developers",
-  "Intended Audience :: Science/Research",
+  "Intended Audience :: Science/Research", 
   "Natural Language :: English",
   "License :: OSI Approved :: Apache Software License",
   "Operating System :: POSIX :: Linux",
@@ -42,49 +39,67 @@ classifiers = [
   "Topic :: Scientific/Engineering :: Artificial Intelligence",
   "Topic :: System :: Distributed Computing",
 ]
-packages = [{ include = "neps" }, { include = "neps_examples" }]
+requires-python = ">=3.10,<3.12"
 
+dependencies = [
+    "ConfigSpace>=0.7,<1.0",
+    "grakel>=0.1,<0.2",
+    "numpy>=1.0,<2.0",
+    "pandas>=2.0,<3.0",
+    "networkx>=2.6.3,<3.0",
+    "nltk>=3.6.4,<4.0",
+    "scipy>=1.13.1",
+    "torch>=2.0.1",
+    "matplotlib>=3.0,<4.0",
+    "more-itertools",
+    "portalocker>=2.0,<3.0",
+    "seaborn>=0.13,<0.14",
+    "pyyaml>=6.0,<7.0",
+    "tensorboard>=2.0,<3.0",
+    "typing-extensions",
+    "torchvision>=0.8.0",
+    "ifbo>=0.3.10",
+    "botorch>=0.12",
+    "gpytorch==1.13.0",
+]
 
-[tool.poetry.dependencies]
-python = ">=3.10,<3.12"
-ConfigSpace = "^0.7"
-grakel = "^0.1"
-numpy = "^1"
-pandas = "^2"
-networkx = "^2.6.3"
-nltk = "^3.6.4"
-scipy = ">=1.13.1"
-torch = ">=2.0.1"
-matplotlib = "^3"
-more-itertools = "*"
-portalocker = "^2"
-seaborn = "^0.13"
-pyyaml = "^6"
-tensorboard = "^2"
-typing-extensions = "*"
-torchvision = ">=0.8.0"
-ifbo = ">=0.3.10"
-botorch = ">=0.12"
-gpytorch = "1.13.0"
+[project.urls]
+homepage = "https://github.com/automl/neps"
+repository = "https://github.com/automl/neps"
+documentation = "https://automl.github.io/neps/"
 
-[tool.poetry.group.dev.dependencies]
-ruff = "*"
-pre-commit = "^3"
-mypy = "^1"
-pytest = "^7"
-pytest-cases = "^3"
-types-PyYAML = "^6"
-mkdocs-material = "*"
-mkdocs-autorefs = "*"
-mkdocs-gen-files = "*"
-mkdocstrings = { extras = ["python"], version = "*" }
-mkdocs-literate-nav = "*"
-mike = "*"
-black = "*"                                           # This allows mkdocstrings to format signatures in the docs
+[project.optional-dependencies]
+dev = [
+    "ruff",
+    "pre-commit>=3,<4",
+    "mypy>=1,<2",
+    "pytest>=7,<8",
+    "pytest-cases>=3,<4",
+    "types-PyYAML>=6,<7",
+    "mkdocs-material",
+    "mkdocs-autorefs",
+    "mkdocs-gen-files",
+    "mkdocstrings[python]",
+    "mkdocs-literate-nav",
+    "mike",
+    "black",  # This allows mkdocstrings to format signatures in the docs
+]
+
+[tool.setuptools.packages.find]
+include = [
+    "neps",
+    "neps.*",
+    "neps_examples",
+]
+exclude = []
 
 [build-system]
-requires = ["poetry-core>=1.1.0"]
-build-backend = "poetry.core.masonry.api"
+requires = [
+    "setuptools>=68.2.2",
+    "wheel>=0.41.2",
+]
+
+build-backend = "setuptools.build_meta"
 
 # TODO(eddiebergman): Include more of these as we go on in migration
 # "tests",

From 10ebbb17bbd1d5a88a4727df1a0439d8ec8452f3 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Fri, 25 Oct 2024 16:56:49 +0200
Subject: [PATCH 05/38] ci: using uv to setup python and install dependencies

---
 .github/workflows/tests.yaml | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 4c3b1c18..d2b105e1 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -33,8 +33,6 @@ jobs:
         run: uv venv --python ${{ matrix.python-version }}
       - name: Install
         run: uv pip install ".[dev]"
-      - name: Activate venv
-        run: source .venv/bin/activate
       - name: Run tests
-        run: uv run python -m pytest -m ""  # Run all markers
+        run: uv run pytest -m ""  # Run all markers
 

From 960ea4cf34ec5bd2825c8e5562f62a6c9291270c Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Fri, 25 Oct 2024 17:02:39 +0200
Subject: [PATCH 06/38] ci: using uv in pre-commit.yaml workflow

---
 .github/workflows/pre-commit.yaml | 16 +++++++++++-----
 1 file changed, 11 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml
index a7bd4690..33b2e805 100644
--- a/.github/workflows/pre-commit.yaml
+++ b/.github/workflows/pre-commit.yaml
@@ -25,9 +25,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
-    - uses: actions/setup-python@v5
+    - name: install the latest version uv
+      uses: astral-sh/setup-uv@v3
       with:
-        python-version: '3.10'
-    - run: pip install pre-commit
-    - run: pre-commit install
-    - run: pre-commit run --all-files
+        version: latest
+    - name: create virtual environment
+      run: uv venv --python '3.10'
+    - name: install pre-commit
+      run: uv pip install pre-commit
+    - name: install pre-commit hooks
+      run: uv run pre-commit install
+    - name: Run pre-commit hooks
+      run: uv run pre-commit run --all-files

From 11be7cd3d7df4ffe60fe7ec428166528d3607d8a Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 09:56:08 +0100
Subject: [PATCH 07/38] ci(.gitignore): removing poetry references

---
 .gitignore | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/.gitignore b/.gitignore
index a6151f89..767f5b14 100644
--- a/.gitignore
+++ b/.gitignore
@@ -22,9 +22,6 @@ site/*
 .vscode/
 .idea/
 
-# Poetry
-poetry.lock
-
 # Misc
 *.sh
 *.model

From f93eb6b88653f1018ec7936e2f24139623a4c066 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 09:56:37 +0100
Subject: [PATCH 08/38] ci: removing poetry references and switching to uv

---
 CONTRIBUTING.md | 60 ++++++++++++++++---------------------------------
 pyproject.toml  |  3 ---
 2 files changed, 19 insertions(+), 44 deletions(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 176869af..df683aba 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -16,50 +16,29 @@ Automatic checks are run on every pull request and on every commit to `master`.
 
 There are three required steps and one optional:
 
-1. Optional: Install miniconda and create an environment
-1. Install poetry
-1. Install the neps package using poetry
+1. Install uv
+1. Install the neps package using uv
 1. Activate pre-commit for the repository
 
 For instructions see below.
 
-## 1. Optional: Install miniconda and create a virtual environment
+## 1. Install uv
 
-To manage python versions install e.g., miniconda with
-
-```bash
-wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O install_miniconda.sh
-bash install_miniconda.sh -b -p $HOME/.conda  # Change to place of preference
-rm install_miniconda.sh
-```
-
-Consider running `~/.conda/bin/conda init` or `~/.conda/bin/conda init zsh` .
-
-Then finally create the environment and activate it
-
-```bash
-conda create -n neps python=3.10
-conda activate neps
-```
-
-## 2. Install poetry
-
-First, install poetry, e.g., via
+First, install uv, e.g., via
 
 ```bash
 curl -sSL https://install.python-poetry.org | python3 -
 # or directly into your virtual env using `pip install poetry`
 ```
 
-Then consider appending
+## 2. Create a virtual environment
 
 ```bash
-export PATH="$HOME/.local/bin:$PATH"
+uv venv --python 3.11
+source .venv/bin/activate
 ```
 
-to your `.zshrc` / `.bashrc` or alternatively simply running the export manually.
-
-## 3. Install the neps Package Using poetry
+## 3. Install the neps Package Using uv
 
 Clone the repository, e.g.,
 
@@ -71,7 +50,7 @@ cd neps
 Then, inside the main directory of neps run
 
 ```bash
-poetry install
+uv pip install -e ".[dev]"
 ```
 
 This will installthe neps package but also additional dev dependencies.
@@ -108,7 +87,7 @@ The tests correspond directly to examples in [neps_examples](https://github.com/
 For linting we use `ruff` for checking code quality. You can install it locally and use it as so:
 
 ```bash
-pip install ruff
+uv pip install ruff
 ruff check --fix neps  # the --fix flag will try to fix issues it can automatically
 ```
 
@@ -131,7 +110,7 @@ There you can find the documentation for all of the rules employed.
 For type checking we use `mypy`. You can install it locally and use it as so:
 
 ```bash
-pip install mypy
+uv pip install mypy
 mypy neps
 ```
 
@@ -212,7 +191,7 @@ In the case of regression test failure, try running it again first, if the probl
 You can also run tests locally by running:
 
 ```
-poetry run pytest -m regression_all
+uv run pytest -m regression_all
 ```
 
 ## Disabling and Skipping Checks etc.
@@ -233,27 +212,26 @@ There are two options:
 
 ## Managing Dependencies
 
-To manage dependencies and for package distribution we use [poetry](https://python-poetry.org/docs/) (replaces pip).
+To manage dependencies we use [uv](https://docs.astral.sh/uv/getting-started/) (replaces pip).
 
 ## Add dependencies
 
 To install a dependency use
 
 ```bash
-poetry add dependency
+uv add dependency
 ```
 
 and commit the updated `pyproject.toml` to git.
 
-For more advanced dependency management see examples in `pyproject.toml` or have a look at the [poetry documentation](https://python-poetry.org/).
+For more advanced dependency management see examples in `pyproject.toml` or have a look at the [uv documentation](https://docs.astral.sh/uv/getting-started/).
 
 ## Install dependencies added by others
 
 When other contributors added dependencies to `pyproject.toml`, you can install them via
 
 ```bash
-poetry lock
-poetry install
+uv pip install -e ".[dev]"
 ```
 
 # Documentation
@@ -295,7 +273,7 @@ We follow the [semantic versioning](https://semver.org) scheme.
 ## 1. Update the Package Version and CITATION.cff
 
 ```bash
-poetry version v0.9.0
+uv bump 0.9.0
 ```
 
 and manually change the version specified in `CITATION.cff`.
@@ -307,7 +285,7 @@ First commit and test
 ```bash
 git add pyproject.toml
 git commit -m "Bump version from v0.8.4 to v0.9.0"
-pytest
+uv run pytest
 ```
 
 Then tag and push
@@ -344,7 +322,7 @@ To publish to PyPI:
 3. Run
 
 ```bash
-poetry publish --build
+poetry publish
 ```
 
 This will ask for your PyPI credentials.
diff --git a/pyproject.toml b/pyproject.toml
index 5f1fc0ab..f0998731 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -334,6 +334,3 @@ module = [
     "requests.*",
 ]
 ignore_errors = true
-
-[tool.poetry.scripts]
-neps = "neps.utils.cli:main"

From c7f3ae0ad5b51c25d603c437ff507af8c5ca5b0a Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 09:59:33 +0100
Subject: [PATCH 09/38] ci(pyproject.toml): adding bumpversion config

---
 pyproject.toml | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pyproject.toml b/pyproject.toml
index f0998731..5c3c4262 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -334,3 +334,9 @@ module = [
     "requests.*",
 ]
 ignore_errors = true
+
+[tool.bumpversion]
+current_version = "0.12.2"
+
+[[tool.bumpversion.files]]
+filename = "pyproject.toml"

From b36b9df25879ec9e25a6443c7860a8c6a2ad324e Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:04:05 +0100
Subject: [PATCH 10/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 5c3c4262..1d54df33 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -337,6 +337,5 @@ ignore_errors = true
 
 [tool.bumpversion]
 current_version = "0.12.2"
+version_files = ["pyproject.toml:^version"]
 
-[[tool.bumpversion.files]]
-filename = "pyproject.toml"

From 68ffc5062dfcaca4ef93ae436f8e65396ad49b12 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:04:40 +0100
Subject: [PATCH 11/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 1d54df33..5b7400c7 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "neural-pipeline-search"
-version = "v0.12.2"
+version = "0.12.2"
 description = "Neural Pipeline Search helps deep learning experts find the best neural pipeline."
 authors = [
     { name = "Danny Stoll", email = "stolld@cs.uni-freiburg.de" },

From 7ed32a4380054f773d962aad0cc2f4b349b2ff8c Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:06:16 +0100
Subject: [PATCH 12/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 5b7400c7..1a839a61 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -337,5 +337,9 @@ ignore_errors = true
 
 [tool.bumpversion]
 current_version = "0.12.2"
-version_files = ["pyproject.toml:^version"]
+version_files = [
+    "pyproject.toml:^version", 
+    "pyproject.toml:[project]\nversion",
+    "CITATION.cff:^version"
+    ]
 

From 99211d61ef4df513c23cb85064fa2fba1a21ac04 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:08:32 +0100
Subject: [PATCH 13/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 1a839a61..ba1885f9 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -337,9 +337,10 @@ ignore_errors = true
 
 [tool.bumpversion]
 current_version = "0.12.2"
-version_files = [
-    "pyproject.toml:^version", 
-    "pyproject.toml:[project]\nversion",
-    "CITATION.cff:^version"
-    ]
 
+[[tool.bumpversion.files]]
+filename = "pyproject.toml"
+parse = "(?P<version>\\d+\\.\\d+\\.\\d+)"
+serialize = "{version}"
+search = "version = \"{current_version}\""
+replace = "version = \"{new_version}\""

From 08cad16f4d00a6d109873e4b4755363313ea796e Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:08:57 +0100
Subject: [PATCH 14/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index ba1885f9..d2ab0c48 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -340,7 +340,5 @@ current_version = "0.12.2"
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"
-parse = "(?P<version>\\d+\\.\\d+\\.\\d+)"
-serialize = "{version}"
 search = "version = \"{current_version}\""
 replace = "version = \"{new_version}\""

From ea7d9fe99dd2b84b9e3dc96daa00913cdc4d3d3f Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:09:24 +0100
Subject: [PATCH 15/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index d2ab0c48..015ca8b3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "neural-pipeline-search"
-version = "0.12.2"
+version = "0.13.0"
 description = "Neural Pipeline Search helps deep learning experts find the best neural pipeline."
 authors = [
     { name = "Danny Stoll", email = "stolld@cs.uni-freiburg.de" },
@@ -336,9 +336,14 @@ module = [
 ignore_errors = true
 
 [tool.bumpversion]
-current_version = "0.12.2"
+current_version = "0.13.0"
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"
 search = "version = \"{current_version}\""
 replace = "version = \"{new_version}\""
+
+[[tool.bumpversion.files]]
+filename = "CITATION.cff"
+search = "version = \"{current_version}\""
+replace = "version = \"{new_version}\""

From 31a7fea508da8c38e144367b23c697e6501f32bf Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:09:42 +0100
Subject: [PATCH 16/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 015ca8b3..b81ad6ce 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "neural-pipeline-search"
-version = "0.13.0"
+version = "0.12.2"
 description = "Neural Pipeline Search helps deep learning experts find the best neural pipeline."
 authors = [
     { name = "Danny Stoll", email = "stolld@cs.uni-freiburg.de" },
@@ -336,7 +336,7 @@ module = [
 ignore_errors = true
 
 [tool.bumpversion]
-current_version = "0.13.0"
+current_version = "0.12.2"
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"

From ff97e1af4ed2c82c575ac6a901b7e567fb4b74a6 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:10:19 +0100
Subject: [PATCH 17/38] ci(pyproject.toml): trying to fix bump my version

---
 CITATION.cff   | 2 +-
 pyproject.toml | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/CITATION.cff b/CITATION.cff
index f62a3157..7a35898f 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -28,6 +28,6 @@ authors:
   - family-names: Hutter
     given-names: Frank
 title: "Neural Pipeline Search (NePS)"
-version: 0.12.1
+version: 0.12.2
 date-released: 2024-07-03
 url: "https://github.com/automl/neps"
diff --git a/pyproject.toml b/pyproject.toml
index b81ad6ce..9ec994c3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -345,5 +345,5 @@ replace = "version = \"{new_version}\""
 
 [[tool.bumpversion.files]]
 filename = "CITATION.cff"
-search = "version = \"{current_version}\""
-replace = "version = \"{new_version}\""
+search = "version: \"{current_version}\""
+replace = "version: \"{new_version}\""

From 6e16956621aca23350fe95e98b56cfd5dd70ffd7 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:11:08 +0100
Subject: [PATCH 18/38] ci(pyproject.toml): trying to fix bump my version

---
 pyproject.toml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 9ec994c3..ead218e8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -345,5 +345,5 @@ replace = "version = \"{new_version}\""
 
 [[tool.bumpversion.files]]
 filename = "CITATION.cff"
-search = "version: \"{current_version}\""
-replace = "version: \"{new_version}\""
+search = "version: {current_version}"
+replace = "version: {new_version}"

From d8e7568424f2ea687c4b749acb1d90ed17b3dc82 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:11:37 +0100
Subject: [PATCH 19/38] ci(pyproject.toml): trying to fix bump my version

---
 CITATION.cff   | 2 +-
 pyproject.toml | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/CITATION.cff b/CITATION.cff
index 7a35898f..07d5b492 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -28,6 +28,6 @@ authors:
   - family-names: Hutter
     given-names: Frank
 title: "Neural Pipeline Search (NePS)"
-version: 0.12.2
+version: 0.13.0
 date-released: 2024-07-03
 url: "https://github.com/automl/neps"
diff --git a/pyproject.toml b/pyproject.toml
index ead218e8..1a0d4a8d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "neural-pipeline-search"
-version = "0.12.2"
+version = "v0.12.2"
 description = "Neural Pipeline Search helps deep learning experts find the best neural pipeline."
 authors = [
     { name = "Danny Stoll", email = "stolld@cs.uni-freiburg.de" },
@@ -340,8 +340,8 @@ current_version = "0.12.2"
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"
-search = "version = \"{current_version}\""
-replace = "version = \"{new_version}\""
+search = "version = \"v{current_version}\""
+replace = "version = \"v{new_version}\""
 
 [[tool.bumpversion.files]]
 filename = "CITATION.cff"

From a10c86edb864a0cd6e1cd7251acd2b9a0446accb Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:11:45 +0100
Subject: [PATCH 20/38] ci(pyproject.toml): trying to fix bump my version

---
 CITATION.cff | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CITATION.cff b/CITATION.cff
index 07d5b492..84b25114 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -28,6 +28,6 @@ authors:
   - family-names: Hutter
     given-names: Frank
 title: "Neural Pipeline Search (NePS)"
-version: 0.13.0
+version: v0.12.2
 date-released: 2024-07-03
 url: "https://github.com/automl/neps"

From 8f75dfb4e49b0db8120426d16467736fd622889e Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:12:38 +0100
Subject: [PATCH 21/38] ci(pyproject.toml): trying to fix bump my version

---
 CITATION.cff | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CITATION.cff b/CITATION.cff
index 84b25114..7a35898f 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -28,6 +28,6 @@ authors:
   - family-names: Hutter
     given-names: Frank
 title: "Neural Pipeline Search (NePS)"
-version: v0.12.2
+version: 0.12.2
 date-released: 2024-07-03
 url: "https://github.com/automl/neps"

From 4f3d8c21153334a514f73bdff349617235e859cc Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:15:56 +0100
Subject: [PATCH 22/38] ci(pyproject.toml): trying to fix bump my version

---
 CONTRIBUTING.md | 4 +---
 pyproject.toml  | 1 +
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index df683aba..f7a8ec36 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -273,11 +273,9 @@ We follow the [semantic versioning](https://semver.org) scheme.
 ## 1. Update the Package Version and CITATION.cff
 
 ```bash
-uv bump 0.9.0
+bump-my-version bump <major | minor | patch>
 ```
 
-and manually change the version specified in `CITATION.cff`.
-
 ## 2. Commit with a Version Tag
 
 First commit and test
diff --git a/pyproject.toml b/pyproject.toml
index 1a0d4a8d..80ca4434 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -337,6 +337,7 @@ ignore_errors = true
 
 [tool.bumpversion]
 current_version = "0.12.2"
+commit = true
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"

From 1982ce1a68b60dd27951c6e5b0faf67b662a7a7c Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:22:07 +0100
Subject: [PATCH 23/38] ci(pyproject.toml): trying to fix bump my version

---
 CONTRIBUTING.md | 8 +++++++-
 pyproject.toml  | 1 +
 2 files changed, 8 insertions(+), 1 deletion(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index f7a8ec36..ccc720d2 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -270,7 +270,13 @@ There are four steps to releasing a new version of neps:
 
 We follow the [semantic versioning](https://semver.org) scheme.
 
-## 1. Update the Package Version and CITATION.cff
+## 1. Run tests
+
+```bash
+uv run pytest
+```
+
+## 2. Update the Package Version and CITATION.cff
 
 ```bash
 bump-my-version bump <major | minor | patch>
diff --git a/pyproject.toml b/pyproject.toml
index 80ca4434..11e60621 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -338,6 +338,7 @@ ignore_errors = true
 [tool.bumpversion]
 current_version = "0.12.2"
 commit = true
+tag = true
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"

From ec338d337c7a689f219b253dacbc4c1b027f4f6d Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:37:26 +0100
Subject: [PATCH 24/38] ci(pyproject.toml): trying to fix bump my version

---
 CONTRIBUTING.md | 22 ++++++++++++++--------
 1 file changed, 14 insertions(+), 8 deletions(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index ccc720d2..dc832cbf 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -27,18 +27,17 @@ For instructions see below.
 First, install uv, e.g., via
 
 ```bash
-curl -sSL https://install.python-poetry.org | python3 -
-# or directly into your virtual env using `pip install poetry`
+# On macOS and Linux.
+curl -LsSf https://astral.sh/uv/install.sh | sh
 ```
 
-## 2. Create a virtual environment
-
 ```bash
-uv venv --python 3.11
-source .venv/bin/activate
+# On Windows.
+powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"
 ```
 
-## 3. Install the neps Package Using uv
+
+## 2. Install the neps Package Using uv
 
 Clone the repository, e.g.,
 
@@ -47,6 +46,13 @@ git clone https://github.com/automl/neps.git
 cd neps
 ```
 
+## 3. Create a virtual environment
+
+```bash
+uv venv --python 3.11
+source .venv/bin/activate
+```
+
 Then, inside the main directory of neps run
 
 ```bash
@@ -326,7 +332,7 @@ To publish to PyPI:
 3. Run
 
 ```bash
-poetry publish
+uv publish
 ```
 
 This will ask for your PyPI credentials.

From 252fcfe8db257e80015e5ef5ed49838e9f918be6 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 10:39:22 +0100
Subject: [PATCH 25/38] ci(pyproject.toml): trying to fix bump my version

---
 CONTRIBUTING.md | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index dc832cbf..03d5b29c 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -37,16 +37,14 @@ powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | ie
 ```
 
 
-## 2. Install the neps Package Using uv
-
-Clone the repository, e.g.,
+## 2. Clone the neps repository
 
 ```bash
 git clone https://github.com/automl/neps.git
 cd neps
 ```
 
-## 3. Create a virtual environment
+## 3. Create a virtual environment and install the neps package
 
 ```bash
 uv venv --python 3.11

From 3a2d3e22695f539481bd9b889ac1f6ef63193acf Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 13:55:29 +0100
Subject: [PATCH 26/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index d2b105e1..337d643f 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -29,10 +29,12 @@ jobs:
         uses: astral-sh/setup-uv@v3
         with:
           version: latest
-      - name: create virtual environment
+      - name: create venv
         run: uv venv --python ${{ matrix.python-version }}
+      - name: Activate venv
+        run: source .venv/bin/activate
       - name: Install
         run: uv pip install ".[dev]"
       - name: Run tests
-        run: uv run pytest -m ""  # Run all markers
+        run: pytest -m ""  # Run all markers
 

From 5a9c75a5f9d2357c8736d1ba33beeb071e91a814 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:00:38 +0100
Subject: [PATCH 27/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index b163053a..dea5abbf 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -32,7 +32,10 @@ jobs:
       - name: create venv
         run: uv venv --python ${{ matrix.python-version }}
       - name: Activate venv
-        run: source .venv/bin/activate
+        run: |
+          source .venv/bin/activate
+          echo "Python version: $(python --version)"
+          echo "which python: $(which python)"
       - name: Install
         run: uv pip install ".[dev]"
       - name: Run tests

From 4d1dcbe01e7e51c80cfe224c10fad3a30c400cd2 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:04:03 +0100
Subject: [PATCH 28/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index dea5abbf..fc94c87d 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -39,5 +39,5 @@ jobs:
       - name: Install
         run: uv pip install ".[dev]"
       - name: Run tests
-        run: pytest -m ""  # Run all markers
+        run: python -m pytest -m ""  # Run all markers
 

From df454dd27ad8371d19d3690132a4d82e63012694 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:06:44 +0100
Subject: [PATCH 29/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index fc94c87d..8b746ec4 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -39,5 +39,5 @@ jobs:
       - name: Install
         run: uv pip install ".[dev]"
       - name: Run tests
-        run: python -m pytest -m ""  # Run all markers
+        run: uv run pytest -m ""  # Run all markers
 

From dd25576caeca1b46065b62b42ff5344a7b600cb6 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:12:09 +0100
Subject: [PATCH 30/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 8b746ec4..6851d966 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -28,14 +28,10 @@ jobs:
       - name: install the latest version uv
         uses: astral-sh/setup-uv@v3
         with:
+          enable-cache: true
           version: latest
       - name: create venv
         run: uv venv --python ${{ matrix.python-version }}
-      - name: Activate venv
-        run: |
-          source .venv/bin/activate
-          echo "Python version: $(python --version)"
-          echo "which python: $(which python)"
       - name: Install
         run: uv pip install ".[dev]"
       - name: Run tests

From 82a4396ffde85f99ab87b37e179dc31276cdb8a9 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:13:25 +0100
Subject: [PATCH 31/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 6851d966..3219f2dd 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -29,6 +29,7 @@ jobs:
         uses: astral-sh/setup-uv@v3
         with:
           enable-cache: true
+          ignore-nothing-to-cache: true
           version: latest
       - name: create venv
         run: uv venv --python ${{ matrix.python-version }}

From 5eb6984267ceb4b763aa811fc2ae7b962d1e6c31 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:14:02 +0100
Subject: [PATCH 32/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 3219f2dd..3ac2dda3 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -28,8 +28,6 @@ jobs:
       - name: install the latest version uv
         uses: astral-sh/setup-uv@v3
         with:
-          enable-cache: true
-          ignore-nothing-to-cache: true
           version: latest
       - name: create venv
         run: uv venv --python ${{ matrix.python-version }}

From c1be2f1193d4aa1b25e8cf4069d967b9dbf5450f Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:17:23 +0100
Subject: [PATCH 33/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 3ac2dda3..932f85aa 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -34,5 +34,5 @@ jobs:
       - name: Install
         run: uv pip install ".[dev]"
       - name: Run tests
-        run: uv run pytest -m ""  # Run all markers
+        run: .venv/bin/python -m pytest -m ""  # Run all markers
 

From 2287b4504b6291871b32af510b6eccf3c0b3305f Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:20:39 +0100
Subject: [PATCH 34/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 932f85aa..d35f13cc 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -29,10 +29,10 @@ jobs:
         uses: astral-sh/setup-uv@v3
         with:
           version: latest
-      - name: create venv
-        run: uv venv --python ${{ matrix.python-version }}
-      - name: Install
-        run: uv pip install ".[dev]"
-      - name: Run tests
-        run: .venv/bin/python -m pytest -m ""  # Run all markers
-
+      - name: run tests
+        run: | 
+          uv venv --python ${{ matrix.python-version }}
+          source .venv/bin/activate
+          uv pip install -e ".[dev]"
+          uv run pytest -m ""  # Run all markers
+    

From 0cfcfa12e7f57c8f8bd3f5013d6e2acd3ab73e88 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:22:24 +0100
Subject: [PATCH 35/38] ci(test.yaml): re-ordering steps when installing and
 testing

---
 .github/workflows/tests.yaml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index d35f13cc..5c24f1c8 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -32,7 +32,6 @@ jobs:
       - name: run tests
         run: | 
           uv venv --python ${{ matrix.python-version }}
-          source .venv/bin/activate
           uv pip install -e ".[dev]"
           uv run pytest -m ""  # Run all markers
     

From e57421ec775af79995d4cfd2289833d5f79c3ef5 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:30:11 +0100
Subject: [PATCH 36/38] chore: fix incorrect python versions

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index d37aac69..b0556963 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -40,7 +40,7 @@ classifiers = [
   "Topic :: Scientific/Engineering :: Artificial Intelligence",
   "Topic :: System :: Distributed Computing",
 ]
-requires-python = ">=3.10,<3.12"
+requires-python = ">=3.10,<3.13"
 
 dependencies = [
     "ConfigSpace>=0.7,<1.0",

From 439a52c8e350c181d91134fa137d5bf8ec19183a Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 14:34:36 +0100
Subject: [PATCH 37/38] chore: reordering test steps

---
 .github/workflows/tests.yaml | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 5c24f1c8..a7b88cb2 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -29,9 +29,10 @@ jobs:
         uses: astral-sh/setup-uv@v3
         with:
           version: latest
+      - name: create venv
+        run: uv venv --python ${{ matrix.python-version }}
+      - name: install dependencies
+        run: uv pip install -e ".[dev]"
       - name: run tests
-        run: | 
-          uv venv --python ${{ matrix.python-version }}
-          uv pip install -e ".[dev]"
-          uv run pytest -m ""  # Run all markers
+        run: uv run pytest -m ""  # Run all markers
     

From 136f78e1a8e0cfa734817300a54b79d4bfae6239 Mon Sep 17 00:00:00 2001
From: "Timur M. Carstensen" <timurcarstensen@gmail.com>
Date: Mon, 25 Nov 2024 22:05:35 +0100
Subject: [PATCH 38/38] chore: updating pypi publishing doc

---
 CONTRIBUTING.md | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 48d5221c..8c3d08ce 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -285,6 +285,8 @@ uv run pytest
 bump-my-version bump <major | minor | patch>
 ```
 
+This will automatically update the version in `pyproject.toml` and `CITATION.cff`, tag the commit and push it to the remote repository.
+
 ### 3. Update Documentation
 
 First check if the documentation has any issues via
@@ -311,6 +313,7 @@ To publish to PyPI:
 3. Run
 
 ```bash
+uv build
 uv publish
 ```