From b2b1f61cc708a4739401c61a3d9cd5d8d70d7c65 Mon Sep 17 00:00:00 2001 From: "Henrique B. R" Date: Mon, 17 Jun 2024 15:39:17 +0100 Subject: [PATCH] Added platypus GPU build script --- scripts/build-platypus-csd3-ampere.sh | 242 ++++++++++++++++++++++++++ 1 file changed, 242 insertions(+) create mode 100755 scripts/build-platypus-csd3-ampere.sh diff --git a/scripts/build-platypus-csd3-ampere.sh b/scripts/build-platypus-csd3-ampere.sh new file mode 100755 index 00000000..6eee1ca8 --- /dev/null +++ b/scripts/build-platypus-csd3-ampere.sh @@ -0,0 +1,242 @@ +#!/bin/bash +#SBATCH --nodes=1 +#SBATCH --ntasks=1 +#SBATCH --time=04:00:00 +#SBATCH --mail-type=none +#SBATCH -p ampere +#SBATCH -A ukaea-ap001-GPU +#SBATCH --cpus-per-task=32 +#SBATCH --gres=gpu:1 +#SBATCH --output=platypus_gpu_build/build.%j.out +#SBATCH --error=platypus_gpu_build/build.%j.err + +## WARNING: THIS SCRIPT WILL UNINSTALL ALL SPACK MODULES ASSOCIATED WITH +## THE ARCHITECTURE DEFINED IN THE ARCH VARIABLE. IF YOU DO NOT WISH TO DO +## THAT, COMMENT OUT THE SPACK UNINSTALL LINE BEFORE SUBMITTING THE SCRIPT +## -> UNINSTALL LINE IN THE install_spack_deps() FUNCTION +ARCH="linux-rocky8-zen" + +export compile_cores=32 + +load_modules(){ + + # Load modules + . /etc/profile.d/modules.sh # Leave this line (enables the module command) + module purge + module load rhel8/slurm + module use /usr/local/software/spack/spack-modules/rocky8-a100-20230831/linux-rocky8-zen3 + module load cuda/11.7.1 + +} + +set_paths(){ + + USER=`whoami` + BUILD_PREFIX=platypus_gpu + BUILD_DIR_NAME=${BUILD_PREFIX}_build + + ROOT_PATH=/home/${USER}/rds/rds-ukaea-ap001/${USER} + BUILD_PATH=${ROOT_PATH}/${BUILD_DIR_NAME} + + echo "Building in ${BUILD_PATH}" + mkdir -p ${BUILD_PATH} || { echo "Failed to create ${BUILD_PATH}" ; exit 1 ; } + + cd ${ROOT_PATH} + . spack/share/spack/setup-env.sh + + cd ${BUILD_PATH} + +} + +install_spack_deps(){ + + # Cleaning up everything to start with a new environment + spack uninstall -ay arch=${ARCH} + + spack external find cuda@11.7.1 + + echo "Installing libfabric..." + spack install libfabric@1.19.0 # 1.19.0 is the latest libfabric version that works on CSD3's ampere nodes + spack load libfabric arch=${ARCH} + + echo "Installing hypre..." + spack install hypre +mpi +shared +cuda cuda_arch=80 +superlu-dist \ + ^mpich +cuda cuda_arch=80 \ + ^superlu-dist +cuda cuda_arch=80 +parmetis + spack load hypre arch=${ARCH} + + echo "Installing Petsc..." + # spack's petsc doesn't like openmpi, but it works with mpich + spack install petsc +cuda cuda_arch=80 +fortran +hdf5 +hypre +metis +mpi \ + ^mpich +cuda cuda_arch=80 \ + ^hdf5 +cxx +fortran +hl +mpi +shared + spack load petsc arch=${ARCH} + + echo "Installing SLEPc..." + spack install slepc +cuda cuda_arch=80 + spack load slepc arch=${ARCH} + + echo "Installing netcdf..." + spack install netcdf-c +parallel-netcdf + spack load netcdf-c arch=${ARCH} + + echo "Installing ninja..." + spack install ninja + spack load ninja arch=${ARCH} + + echo "Adding python modules..." + + spack install py-pyaml + spack load py-pyaml arch=${ARCH} + + spack install py-jinja2 + spack load py-jinja2 arch=${ARCH} + + spack install py-packaging + spack load py-packaging arch=${ARCH} + + spack install py-setuptools + spack load py-setuptools arch=${ARCH} + + +} + +install_gslib(){ + + echo "Installing gslib..." + cd ${BUILD_PATH} + git clone https://github.com/Nek5000/gslib.git + cd gslib + make CC=mpicc CFLAGS="-O2 -fPIC" -j"$compile_cores" +} + +install_mfem(){ + + export CXX=mpic++ + export CC=mpicc + export F90=mpif90 + export F77=mpif77 + export FC=mpif90 + + # Build MFEM + cd ${BUILD_PATH} + git clone https://github.com/Heinrich-BR/mfem.git + cd mfem + git checkout master + mkdir build + cd build + echo "Building MFEM" + cmake .. \ + -DCMAKE_BUILD_TYPE=Release \ + -DBUILD_SHARED_LIBS=YES \ + -DMFEM_USE_OPENMP=NO \ + -DMFEM_THREAD_SAFE=YES \ + -DMFEM_ENABLE_EXAMPLES=YES \ + -DMFEM_ENABLE_MINIAPPS=YES \ + -DMFEM_USE_MPI=YES \ + -DMFEM_USE_CUDA=YES \ + -DCUDA_ARCH=sm_80 \ + -DMFEM_USE_METIS_5=YES \ + -DMFEM_USE_SUPERLU=YES \ + -DMFEM_USE_NETCDF=YES \ + -DMFEM_USE_GSLIB=YES \ + -DGSLIB_DIR=${BUILD_PATH}/gslib/build + + if [ $? -eq 2 ]; then + echo "MFEM config failed" + exit 1 + fi + + make -j"$compile_cores" + + if [ $? -eq 2 ]; then + echo "MFEM build failed" + exit 1 + fi + + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${BUILD_PATH}/mfem/build:${BUILD_PATH}/mfem/build/miniapps/common +} + +install_moose(){ + + # Some of the variables needed + export MOOSE_JOBS=$compile_cores + export LIBMESH_JOBS=$compile_cores + export METHOD="opt" + export SLEPC_DIR=`spack find --format "{prefix}" slepc arch=${ARCH}` + + + cd ${BUILD_PATH} + git clone https://github.com/idaholab/moose + cd moose + + echo "Building libmesh..." + ./scripts/update_and_rebuild_libmesh.sh --with-mpi + if [ $? -eq 2 ]; then + echo "libmesh build failed" + exit 1 + fi + + echo "Building WASP..." + ./scripts/update_and_rebuild_wasp.sh + if [ $? -eq 2 ]; then + echo "WASP build failed" + exit 1 + fi + + ./configure --with-derivative-size=200 + if [ $? -eq 2 ]; then + echo "MOOSE configure failed" + exit 1 + fi + + cd framework + make -j"$compile_cores" + if [ $? -eq 2 ]; then + echo "MOOSE framework build failed" + exit 1 + fi + + cd ../modules + make -j"$compile_cores" + if [ $? -eq 2 ]; then + echo "MOOSE modules build failed" + exit 1 + fi + + # This takes very long! Only run the tests if you really need to! + #cd ../test + #make -j"$compile_cores" + #if [ $? -eq 2 ]; then + # echo "MOOSE test build failed" + # exit 1 + #fi + + #./run_tests -j"$compile_cores" +} + +install_platypus(){ + + cd ${BUILD_PATH} + + echo "Building platypus..." + git clone https://github.com/aurora-multiphysics/platypus.git + cd platypus + git submodule update --init --recursive + cd contrib/hephaestus/ + mkdir build + cd build + cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DMFEM_DIR=${BUILD_PATH}/mfem/build .. + ninja + cd ${BUILD_PATH}/platypus + make -j"$compile_cores" + +} + +load_modules +set_paths +install_spack_deps +install_gslib +install_mfem +install_moose +install_platypus \ No newline at end of file