batcher_input_example.yml

shell_script: ./test/resources/start_ahrd_batched.sh
ahrd_call: "java -Xmx2048m -jar ./dist/ahrd.jar #batch#"

proteins_dir: ./test/resources/proteins
batch_ymls_dir: ./test/resources/batch_ymls

token_score_bit_score_weight: 0.5
token_score_database_score_weight: 0.3
token_score_overlap_score_weight: 0.2

blast_dbs:
  swissprot:
    dir: ./test/resources/sprot_blast_results
    weight: 100
    blacklist: ./test/resources/blacklist_descline.txt
    filter: ./test/resources/filter_descline_sprot.txt
    token_blacklist: ./test/resources/blacklist_token.txt
    description_score_bit_score_weight: 0.2

  tair:
    dir: ./test/resources/tair_blast_results
    weight: 50
    blacklist: ./test/resources/blacklist_descline.txt
    filter: ./test/resources/filter_descline_tair.txt
    token_blacklist: ./test/resources/blacklist_token.txt
    description_score_bit_score_weight: 0.4

  trembl:
    dir: ./test/resources/trembl_blast_results
    weight: 10
    blacklist: ./test/resources/blacklist_descline.txt
    filter: ./test/resources/filter_descline_trembl.txt
    token_blacklist: ./test/resources/blacklist_token.txt
    description_score_bit_score_weight: 0.4

interpro_results_dir: ./test/resources/interpro_results
interpro_database: ./test/resources/interpro_31.xml
gene_ontology_results_dir: ./test/resources/gene_ontology_results
output_dir: ./test/resources/