Install error

[mabouelk]

I am trying to install civet on macOS but I keep getting this error message:

Pip subprocess error:
Running command git clone -q https://github.com/cov-ert/datafunk.git /private/var/folders/vy/29g9j_0j5zb1kb7bk66t6dz80000gn/T/pip-req-build-k1c5v6ad
Running command git clone -q https://github.com/cov-ert/reportfunk.git /private/var/folders/vy/29g9j_0j5zb1kb7bk66t6dz80000gn/T/pip-req-build-98xm72dt
Running command git clone -q https://github.com/cov-ert/clusterfunk.git /private/var/folders/vy/29g9j_0j5zb1kb7bk66t6dz80000gn/T/pip-req-build-oijwpoq1
ERROR: Package 'jsonschema' requires a different Python: 3.6.13 not in '>=3.7'

failed

CondaEnvException: Pip failed

[ViralVerity]

This sounds like an environment error - the Python specified in the environment provided for civet is 3.6, so that will cover that package's requirements.
Make sure that you have built and activated the civet environment properly and then try installing in the environment again

[mabouelk]

python 3.6 is no longer available

[ViralVerity]

I took another look, and it's that one of the packages we use requires a different python version to the one that we specify in the environment. Jsonschema needs 3.7, and we specify 3.6.13.

This is a slightly tricky issue, and we're currently trying to move beyond this version of civet - I recommend you try and use the newer version of civet (civet3) which we will be releasing soon: https://github.com/cov-ert/civet3