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Problem about running RGI #295

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quliping opened this issue Oct 19, 2024 · 1 comment
Open

Problem about running RGI #295

quliping opened this issue Oct 19, 2024 · 1 comment
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@quliping
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I installed RGI using conda as the root user, and load database using 'System wide' mode:
rgi load --card_json ./card.json --card_annotation card_database_v3.3.0.fasta --card_annotation_all_models card_database_v3.3.0_all.fasta --wildcard_annotation wildcard_database_v4.0.2.fasta --wildcard_annotation_all_models wildcard_database_v4.0.2_all.fasta --wildcard_index wildcard/index-for-model-sequences.txt --wildcard_version 4.0.2 --amr_kmers wildcard/all_amr_61mers.txt --kmer_database wildcard/61_kmer_db.json --kmer_size 61

However, I got Permission denied error when annotate protein using a non-root user account. Here are my command :rgi main -i 03_proteins_of_assembly_rename/GT1.faa -o try_out/try_rgi_out -t protein -a DIAMOND -n 48 and error message:
image

If I perfrom annotation using a root user account, the first Permission denied error was disappeared, but I still got some warnings:
image

  1. Is there any method to make RDI available for all users?
  2. What's wrong for these warning messages?

The RGI version is 6.0.3, and here are database version:
image

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Issue is stale and will be closed in 7 days unless there is new activity

@github-actions github-actions bot added the stale label Dec 18, 2024
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