You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I installed RGI using conda as the root user, and load database using 'System wide' mode: rgi load --card_json ./card.json --card_annotation card_database_v3.3.0.fasta --card_annotation_all_models card_database_v3.3.0_all.fasta --wildcard_annotation wildcard_database_v4.0.2.fasta --wildcard_annotation_all_models wildcard_database_v4.0.2_all.fasta --wildcard_index wildcard/index-for-model-sequences.txt --wildcard_version 4.0.2 --amr_kmers wildcard/all_amr_61mers.txt --kmer_database wildcard/61_kmer_db.json --kmer_size 61
However, I got Permission denied error when annotate protein using a non-root user account. Here are my command :rgi main -i 03_proteins_of_assembly_rename/GT1.faa -o try_out/try_rgi_out -t protein -a DIAMOND -n 48 and error message:
If I perfrom annotation using a root user account, the first Permission denied error was disappeared, but I still got some warnings:
Is there any method to make RDI available for all users?
What's wrong for these warning messages?
The RGI version is 6.0.3, and here are database version:
The text was updated successfully, but these errors were encountered:
I installed RGI using conda as the root user, and load database using 'System wide' mode:
rgi load --card_json ./card.json --card_annotation card_database_v3.3.0.fasta --card_annotation_all_models card_database_v3.3.0_all.fasta --wildcard_annotation wildcard_database_v4.0.2.fasta --wildcard_annotation_all_models wildcard_database_v4.0.2_all.fasta --wildcard_index wildcard/index-for-model-sequences.txt --wildcard_version 4.0.2 --amr_kmers wildcard/all_amr_61mers.txt --kmer_database wildcard/61_kmer_db.json --kmer_size 61
However, I got Permission denied error when annotate protein using a non-root user account. Here are my command :
rgi main -i 03_proteins_of_assembly_rename/GT1.faa -o try_out/try_rgi_out -t protein -a DIAMOND -n 48
and error message:If I perfrom annotation using a root user account, the first Permission denied error was disappeared, but I still got some warnings:
The RGI version is 6.0.3, and here are database version:
The text was updated successfully, but these errors were encountered: