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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "clinica"
version = "0.9.3"
description = "Software platform for clinical neuroimaging studies"
license = "MIT"
authors = ["ARAMIS Lab"]
maintainers = ["Clinica developers <[email protected]>"]
readme = "README.md"
homepage = "https://www.clinica.run"
repository = "https://github.com/aramis-lab/clinica.git"
documentation = "https://aramislab.paris.inria.fr/clinica/docs/public/latest"
keywords = [
"bids",
"image processing",
"machine learning",
"neuroimaging",
"neuroscience"
]
classifiers = [
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: End Users/Desktop",
"Operating System :: OS Independent",
"Topic :: Scientific/Engineering :: Medical Science Apps.",
"Topic :: Scientific/Engineering :: Image Processing"
]
[tool.poetry.dependencies]
python = ">=3.9,<3.13"
nibabel = "^5"
nipype = ">=1.8.6"
argcomplete = "^1.9.4"
pandas = "^2"
jinja2 = "^3"
xvfbwrapper = "*"
numpy = "^2"
scikit-learn = "^1.0"
nilearn = "^0.10.3"
colorlog = "^5"
xgboost = "*"
scipy = "^1.12"
matplotlib = "*"
scikit-image = "*"
pydicom = "*"
networkx = "^2"
click = "^8"
click-option-group = "^0.5"
xlrd = "*"
openpyxl = "*"
fsspec = "*"
pydra-nipype1 = "^0.2"
pydra = "^0.22"
pybids = "^0.16"
joblib = "^1.2.0"
attrs = ">=20.1.0"
cattrs = "*"
pydra-bids = "^0.0.10"
pydra-freesurfer = "^0.0.9"
pydra-petpvc="^0.0.4"
pydra-fsl = "^0.0.22"
antspyx = "^0.4.2"
rich = "^13.8.0"
[tool.poetry.group.dev.dependencies]
pytest = "*"
pytest-cov = "*"
pytest-mock = "*"
pytest-random-order = "*"
pytest-timeout = "*"
pytest-xdist = "*"
[tool.poetry.group.docs]
optional = true
[tool.poetry.group.docs.dependencies]
mkdocs = "^1.1"
mkdocs-material = ">=7.1.8"
pymdown-extensions = "*"
[tool.poetry.group.optional.dependencies]
brainstat = "^0.4.2"
[tool.poetry.scripts]
clinica = "clinica.cmdline:main"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.ruff]
target-version = "py38"
line-length = 88
[tool.ruff.lint]
select = [
"E",
"W",
"I001",
# "PTH",
]
ignore = ["E203", "E501"]
[tool.ruff.lint.isort]
known-first-party = ["clinica"]
[tool.ruff.format]
quote-style = "double"
indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "auto"
[tool.codespell]
summary = ''
skip = ".git,LICENSE.txt,ignore_words.txt,*.m"
quiet-level = 3
ignore-words = "ignore_words.txt"