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KIRBY21 BIDS converter #1108

KIRBY21 BIDS converter

KIRBY21 BIDS converter #1108

Workflow file for this run

name: Non Regression Tests - Converters
on:
push:
branches: ["dev", "maint-*"]
pull_request:
branches: ["dev", "maint-*"]
permissions:
contents: read
concurrency:
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}'
cancel-in-progress: true
env:
POETRY_VERSION: '1.6.1'
PYTHON_VERSION: '3.10'
jobs:
test-converters-MacOS:
runs-on:
- self-hosted
- macOS
steps:
- uses: actions/checkout@v4
- uses: snok/install-poetry@v1
with:
version: ${{ env.POETRY_VERSION }}
virtualenvs-create: false
- name: Run non-regression tests for converters
run: |
make env.conda
source ~/miniconda3/etc/profile.d/conda.sh
conda activate "${{ github.workspace }}"/env
make install
cd test
poetry run pytest --verbose \
--working_directory=/Volumes/data/working_dir_mac \
--input_data_directory=/Volumes/data_ci \
--basetemp=/Volumes/data/tmp \
--junitxml=./test-reports/run_converters_mac.xml \
--disable-warnings \
./nonregression/iotools/test_run_converters.py
- name: Clean
run: |
rm -rf /Volumes/data/tmp
rm -rf /Volumes/data/working_dir_mac
test-converters-Linux:
runs-on:
- self-hosted
- Linux
- test-runner
steps:
- uses: actions/checkout@v4
- uses: snok/install-poetry@v1
with:
version: ${{ env.POETRY_VERSION }}
virtualenvs-create: false
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PYTHON_VERSION }}
cache: poetry
- name: Run non-regression tests for converters
run: |
make env.conda
source /builds/miniconda/etc/profile.d/conda.sh
conda activate "${{ github.workspace }}"/env
make install
cd test
poetry run pytest --verbose \
--working_directory=/mnt/data/ci/working_dir_linux \
--input_data_directory=/mnt/data_ci \
--basetemp=/mnt/data/ci/tmp \
--junitxml=./test-reports/run_converters_linux.xml \
--disable-warnings \
./nonregression/iotools/test_run_converters.py
- name: Clean
run: |
rm -rf /mnt/data/ci/tmp
rm -rf /mnt/data/ci/working_dir_linux