diff --git a/.github/workflows/check_cpp_files.yml b/.github/workflows/check_cpp_files.yml index 59ae5824a..b96ed6075 100644 --- a/.github/workflows/check_cpp_files.yml +++ b/.github/workflows/check_cpp_files.yml @@ -12,12 +12,17 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: Checkout C++ - uses: actions/checkout@v3 + uses: actions/checkout@v4 with: repository: apache/datasketches-cpp path: cpp + - name: Setup Java + uses: actions/setup-java@v2 + with: + java-version: '11' + distribution: 'temurin' - name: Configure C++ build run: cd cpp/build && cmake .. -DGENERATE=true - name: Build C++ unit tests diff --git a/pom.xml b/pom.xml index 51fe1d414..cadcad01b 100644 --- a/pom.xml +++ b/pom.xml @@ -33,7 +33,7 @@ under the License. org.apache.datasketches datasketches-java - 6.1.1 + 6.2.0-SNAPSHOT jar ${project.artifactId} diff --git a/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilter.java b/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilter.java index eafe88340..171fc2cfb 100644 --- a/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilter.java +++ b/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilter.java @@ -33,8 +33,8 @@ import org.apache.datasketches.memory.XxHash; /** - *

A Bloom filter is a data structure that can be used for probabilistic - * set membership.

+ * A Bloom filter is a data structure that can be used for probabilistic + * set membership. * *

When querying a Bloom filter, there are no false positives. Specifically: * When querying an item that has already been inserted to the filter, the filter will diff --git a/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilterBuilder.java b/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilterBuilder.java index f865a3350..ee17a9918 100644 --- a/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilterBuilder.java +++ b/src/main/java/org/apache/datasketches/filters/bloomfilter/BloomFilterBuilder.java @@ -25,8 +25,8 @@ import org.apache.datasketches.memory.WritableMemory; /** - *

This class provides methods to help estimate the correct parameters when - * creating a Bloom filter, and methods to create the filter using those values.

+ * This class provides methods to help estimate the correct parameters when + * creating a Bloom filter, and methods to create the filter using those values. * *

The underlying math is described in the * diff --git a/src/main/java/org/apache/datasketches/frequencies/ItemsSketch.java b/src/main/java/org/apache/datasketches/frequencies/ItemsSketch.java index 7c5bc770d..b2648b943 100644 --- a/src/main/java/org/apache/datasketches/frequencies/ItemsSketch.java +++ b/src/main/java/org/apache/datasketches/frequencies/ItemsSketch.java @@ -55,10 +55,10 @@ import org.apache.datasketches.memory.WritableMemory; /** - *

This sketch is useful for tracking approximate frequencies of items of type <T> + * This sketch is useful for tracking approximate frequencies of items of type <T> * with optional associated counts (<T> item, long count) that are members of a * multiset of such items. The true frequency of an item is defined to be the sum of associated - * counts.

+ * counts. * *

This implementation provides the following capabilities:

* * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + * * @param searchCrit the desired search criteria. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. diff --git a/src/main/java/org/apache/datasketches/quantilescommon/LongsSortedView.java b/src/main/java/org/apache/datasketches/quantilescommon/LongsSortedView.java index 4823edd1d..e7e3521c7 100644 --- a/src/main/java/org/apache/datasketches/quantilescommon/LongsSortedView.java +++ b/src/main/java/org/apache/datasketches/quantilescommon/LongsSortedView.java @@ -38,7 +38,7 @@ public interface LongsSortedView extends SortedView { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 overlapping intervals. - * + *
*

The start of each interval is below the lowest item retained by the sketch * corresponding to a zero rank or zero probability, and the end of the interval * is the rank or cumulative probability corresponding to the split point.

@@ -55,7 +55,7 @@ public interface LongsSortedView extends SortedView { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a discrete CDF array of m+1 double ranks (or cumulative probabilities) on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. @@ -100,7 +100,7 @@ default double[] getCDF(long[] splitPoints, QuantileSearchCriteria searchCrit) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 consecutive, non-overlapping intervals. - * + *
*

Each interval except for the end intervals starts with a split point and ends with the next split * point in sequence.

* @@ -124,7 +124,7 @@ default double[] getCDF(long[] splitPoints, QuantileSearchCriteria searchCrit) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. diff --git a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesAPI.java b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesAPI.java index 9943fefee..a7af4cf77 100644 --- a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesAPI.java +++ b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesAPI.java @@ -20,12 +20,12 @@ package org.apache.datasketches.quantilescommon; /** - *

This is a stochastic streaming sketch that enables near-real time analysis of the + * This is a stochastic streaming sketch that enables near-real time analysis of the * approximate distribution of items from a very large stream in a single pass, requiring only * that the items are comparable. * The analysis is obtained using the getQuantile() function or the * inverse functions getRank(), getPMF() (the Probability Mass Function), and getCDF() - * (the Cumulative Distribution Function).

+ * (the Cumulative Distribution Function). * *

Given an input stream of N items, the natural rank of any specific * item is defined as its index (1 to N) in the hypothetical sorted stream of all diff --git a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesDoublesAPI.java b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesDoublesAPI.java index e8e5310f5..659528191 100644 --- a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesDoublesAPI.java +++ b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesDoublesAPI.java @@ -21,6 +21,8 @@ import static org.apache.datasketches.quantilescommon.QuantileSearchCriteria.INCLUSIVE; +import org.apache.datasketches.common.SketchesArgumentException; + /** * The Quantiles API for item type double. * @see QuantilesAPI @@ -33,7 +35,7 @@ public interface QuantilesDoublesAPI extends QuantilesAPI { * This is equivalent to {@link #getCDF(double[], QuantileSearchCriteria) getCDF(splitPoints, INCLUSIVE)} * @param splitPoints an array of m unique, monotonically increasing items. * @return a discrete CDF array of m+1 double ranks (or cumulative probabilities) on the interval [0.0, 1.0]. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ default double[] getCDF(double[] splitPoints) { return getCDF(splitPoints, INCLUSIVE); @@ -50,7 +52,7 @@ default double[] getCDF(double[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 overlapping intervals. - * + *

*

The start of each interval is below the lowest item retained by the sketch * corresponding to a zero rank or zero probability, and the end of the interval * is the rank or cumulative probability corresponding to the split point.

@@ -67,10 +69,10 @@ default double[] getCDF(double[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a discrete CDF array of m+1 double ranks (or cumulative probabilities) on the interval [0.0, 1.0]. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ double[] getCDF(double[] splitPoints, QuantileSearchCriteria searchCrit); @@ -79,7 +81,7 @@ default double[] getCDF(double[] splitPoints) { * item returned by getQuantile(1.0). * * @return the maximum item of the stream - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ double getMaxItem(); @@ -88,7 +90,7 @@ default double[] getCDF(double[] splitPoints) { * item returned by getQuantile(0.0). * * @return the minimum item of the stream - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ double getMinItem(); @@ -96,7 +98,7 @@ default double[] getCDF(double[] splitPoints) { * This is equivalent to {@link #getPMF(double[], QuantileSearchCriteria) getPMF(splitPoints, INCLUSIVE)} * @param splitPoints an array of m unique, monotonically increasing items. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ default double[] getPMF(double[] splitPoints) { return getPMF(splitPoints, INCLUSIVE); @@ -113,7 +115,7 @@ default double[] getPMF(double[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 consecutive, non-overlapping intervals. - * + *
*

Each interval except for the end intervals starts with a split point and ends with the next split * point in sequence.

* @@ -137,10 +139,10 @@ default double[] getPMF(double[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ double[] getPMF(double[] splitPoints, QuantileSearchCriteria searchCrit); @@ -148,7 +150,7 @@ default double[] getPMF(double[] splitPoints) { * This is equivalent to {@link #getQuantile(double, QuantileSearchCriteria) getQuantile(rank, INCLUSIVE)} * @param rank the given normalized rank, a double in the range [0.0, 1.0]. * @return the approximate quantile given the normalized rank. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ default double getQuantile(double rank) { return getQuantile(rank, INCLUSIVE); @@ -163,7 +165,7 @@ default double getQuantile(double rank) { * If EXCLUSIVE, he given rank includes all quantiles < * the quantile directly corresponding to the given rank. * @return the approximate quantile given the normalized rank. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. * @see org.apache.datasketches.quantilescommon.QuantileSearchCriteria */ double getQuantile(double rank, QuantileSearchCriteria searchCrit); @@ -180,7 +182,7 @@ default double getQuantile(double rank) { * @param rank the given normalized rank * @return the lower bound of the quantile confidence interval in which the quantile of the * given rank exists. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ double getQuantileLowerBound(double rank); @@ -196,7 +198,7 @@ default double getQuantile(double rank) { * @param rank the given normalized rank * @return the upper bound of the quantile confidence interval in which the true quantile of the * given rank exists. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ double getQuantileUpperBound(double rank); @@ -205,7 +207,7 @@ default double getQuantile(double rank) { * @param ranks the given array of normalized ranks, each of which must be * in the interval [0.0,1.0]. * @return an array of quantiles corresponding to the given array of normalized ranks. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ default double[] getQuantiles(double[] ranks) { return getQuantiles(ranks, INCLUSIVE); @@ -219,7 +221,7 @@ default double[] getQuantiles(double[] ranks) { * @param searchCrit if INCLUSIVE, the given ranks include all quantiles ≤ * the quantile directly corresponding to each rank. * @return an array of quantiles corresponding to the given array of normalized ranks. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. * @see org.apache.datasketches.quantilescommon.QuantileSearchCriteria */ double[] getQuantiles(double[] ranks, QuantileSearchCriteria searchCrit); @@ -228,7 +230,7 @@ default double[] getQuantiles(double[] ranks) { * This is equivalent to {@link #getRank(double, QuantileSearchCriteria) getRank(quantile, INCLUSIVE)} * @param quantile the given quantile * @return the normalized rank corresponding to the given quantile - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ default double getRank(double quantile) { return getRank(quantile, INCLUSIVE); @@ -240,7 +242,7 @@ default double getRank(double quantile) { * @param quantile the given quantile * @param searchCrit if INCLUSIVE the given quantile is included into the rank. * @return the normalized rank corresponding to the given quantile - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. * @see org.apache.datasketches.quantilescommon.QuantileSearchCriteria */ double getRank(double quantile, QuantileSearchCriteria searchCrit); @@ -249,7 +251,7 @@ default double getRank(double quantile) { * This is equivalent to {@link #getRanks(double[], QuantileSearchCriteria) getRanks(quantiles, INCLUSIVE)} * @param quantiles the given array of quantiles * @return an array of normalized ranks corresponding to the given array of quantiles. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. */ default double[] getRanks(double[] quantiles) { return getRanks(quantiles, INCLUSIVE); @@ -262,7 +264,7 @@ default double[] getRanks(double[] quantiles) { * @param quantiles the given array of quantiles * @param searchCrit if INCLUSIVE, the given quantiles include the rank directly corresponding to each quantile. * @return an array of normalized ranks corresponding to the given array of quantiles. - * @throws IllegalArgumentException if sketch is empty. + * @throws SketchesArgumentException if sketch is empty. * @see org.apache.datasketches.quantilescommon.QuantileSearchCriteria */ double[] getRanks(double[] quantiles, QuantileSearchCriteria searchCrit); diff --git a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesFloatsAPI.java b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesFloatsAPI.java index 986780444..8b8a91bdd 100644 --- a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesFloatsAPI.java +++ b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesFloatsAPI.java @@ -49,7 +49,7 @@ default double[] getCDF(float[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 overlapping intervals. - * + *
*

The start of each interval is below the lowest item retained by the sketch * corresponding to a zero rank or zero probability, and the end of the interval * is the rank or cumulative probability corresponding to the split point.

@@ -66,7 +66,7 @@ default double[] getCDF(float[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a discrete CDF array of m+1 double ranks (or cumulative probabilities) on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. @@ -112,7 +112,7 @@ default double[] getPMF(float[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 consecutive, non-overlapping intervals. - * + *
*

Each interval except for the end intervals starts with a split point and ends with the next split * point in sequence.

* @@ -136,7 +136,7 @@ default double[] getPMF(float[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. diff --git a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesGenericAPI.java b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesGenericAPI.java index 459e58cdd..bc0881282 100644 --- a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesGenericAPI.java +++ b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesGenericAPI.java @@ -53,7 +53,7 @@ default double[] getCDF(T[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 overlapping intervals. - * + *
*

The start of each interval is below the lowest item retained by the sketch * corresponding to a zero rank or zero probability, and the end of the interval * is the rank or cumulative probability corresponding to the split point.

@@ -70,7 +70,7 @@ default double[] getCDF(T[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a discrete CDF array of m+1 double ranks (or cumulative probabilities) on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. @@ -132,7 +132,7 @@ default double[] getPMF(T[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 consecutive, non-overlapping intervals. - * + *
*

Each interval except for the end intervals starts with a split point and ends with the next split * point in sequence.

* @@ -156,7 +156,7 @@ default double[] getPMF(T[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. diff --git a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesLongsAPI.java b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesLongsAPI.java index 2b542a68f..fb1ca5817 100644 --- a/src/main/java/org/apache/datasketches/quantilescommon/QuantilesLongsAPI.java +++ b/src/main/java/org/apache/datasketches/quantilescommon/QuantilesLongsAPI.java @@ -50,7 +50,7 @@ default double[] getCDF(long[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 overlapping intervals. - * + *
*

The start of each interval is below the lowest item retained by the sketch * corresponding to a zero rank or zero probability, and the end of the interval * is the rank or cumulative probability corresponding to the split point.

@@ -67,7 +67,7 @@ default double[] getCDF(long[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a discrete CDF array of m+1 double ranks (or cumulative probabilities) on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. @@ -113,7 +113,7 @@ default double[] getPMF(long[] splitPoints) { * @param splitPoints an array of m unique, monotonically increasing items * (of the same type as the input items) * that divide the item input domain into m+1 consecutive, non-overlapping intervals. - * + *
*

Each interval except for the end intervals starts with a split point and ends with the next split * point in sequence.

* @@ -137,7 +137,7 @@ default double[] getPMF(long[] splitPoints) { * * *

It is not recommended to include either the minimum or maximum items of the input stream.

- * + *
* @param searchCrit the desired search criteria. * @return a PMF array of m+1 probability masses as doubles on the interval [0.0, 1.0]. * @throws IllegalArgumentException if sketch is empty. diff --git a/src/main/java/org/apache/datasketches/req/BaseReqSketch.java b/src/main/java/org/apache/datasketches/req/BaseReqSketch.java index 2460308fc..99de621d9 100644 --- a/src/main/java/org/apache/datasketches/req/BaseReqSketch.java +++ b/src/main/java/org/apache/datasketches/req/BaseReqSketch.java @@ -160,6 +160,7 @@ public boolean isReadOnly() { /** * {@inheritDoc} + * *

The parameters k, highRankAccuracy, and reqDebug will not change.

*/ @Override diff --git a/src/main/java/org/apache/datasketches/req/ReqSerDe.java b/src/main/java/org/apache/datasketches/req/ReqSerDe.java index 52b1371a9..952749deb 100644 --- a/src/main/java/org/apache/datasketches/req/ReqSerDe.java +++ b/src/main/java/org/apache/datasketches/req/ReqSerDe.java @@ -110,7 +110,8 @@ * 0 || (empty)| 0 | K | Flags |FamID=17| SerVer | PreInts = 2 | * *
-   * 

Flags:

+ * + * Flags: * Bit 0 : Endianness, reserved * Bit 1 : ReadOnly, reserved * Bit 2 : Empty diff --git a/src/main/java/org/apache/datasketches/sampling/ReservoirLongsUnion.java b/src/main/java/org/apache/datasketches/sampling/ReservoirLongsUnion.java index c3ef33957..b58317a9a 100644 --- a/src/main/java/org/apache/datasketches/sampling/ReservoirLongsUnion.java +++ b/src/main/java/org/apache/datasketches/sampling/ReservoirLongsUnion.java @@ -132,10 +132,9 @@ public static ReservoirLongsUnion heapify(final Memory srcMem) { /** * Union the given sketch. - *

- * This method can be repeatedly called. If the given sketch is null it is interpreted as an empty - * sketch. - *

+ * + *

This method can be repeatedly called. If the given sketch is null it is interpreted as an empty + * sketch.

* * @param sketchIn The incoming sketch. */ diff --git a/src/main/java/org/apache/datasketches/sampling/ReservoirSize.java b/src/main/java/org/apache/datasketches/sampling/ReservoirSize.java index e6f361955..e12d31aa9 100644 --- a/src/main/java/org/apache/datasketches/sampling/ReservoirSize.java +++ b/src/main/java/org/apache/datasketches/sampling/ReservoirSize.java @@ -25,6 +25,7 @@ /** * This class provides a compact representation of reservoir size by encoding it into a * fixed-point 16-bit value. + * *

The value itself is a fractional power of 2, with 5 bits of exponent and 11 bits of * mantissa. The exponent allows a choice of anywhere from 0-30, and there are 2048 possible * reservoir size values within each octave. Because reservoir size must be an integer, this diff --git a/src/main/java/org/apache/datasketches/sampling/package-info.java b/src/main/java/org/apache/datasketches/sampling/package-info.java index edfaa20a8..bbe446914 100644 --- a/src/main/java/org/apache/datasketches/sampling/package-info.java +++ b/src/main/java/org/apache/datasketches/sampling/package-info.java @@ -18,8 +18,8 @@ */ /** - *

This package is dedicated to streaming algorithms that enable fixed size, uniform sampling of - * weighted and unweighted items from a stream.

+ * This package is dedicated to streaming algorithms that enable fixed size, uniform sampling of + * weighted and unweighted items from a stream. * *

These sketches are mergeable and can be serialized and deserialized to/from a compact * form.

diff --git a/src/main/java/org/apache/datasketches/tdigest/TDigestDouble.java b/src/main/java/org/apache/datasketches/tdigest/TDigestDouble.java index 1e3408511..478b80124 100644 --- a/src/main/java/org/apache/datasketches/tdigest/TDigestDouble.java +++ b/src/main/java/org/apache/datasketches/tdigest/TDigestDouble.java @@ -32,6 +32,7 @@ import org.apache.datasketches.memory.WritableBuffer; import org.apache.datasketches.memory.WritableMemory; import org.apache.datasketches.quantilescommon.QuantilesAPI; +import org.apache.datasketches.quantilescommon.QuantilesUtil; /** * t-Digest for estimating quantiles and ranks. @@ -125,6 +126,7 @@ public void merge(final TDigestDouble other) { /** * Process buffered values and merge centroids if needed */ + // this method will become private in the next major version public void compress() { if (numBuffered_ == 0) { return; } final int num = numBuffered_ + numCentroids_; @@ -277,6 +279,51 @@ public double getQuantile(final double rank) { return weightedAverage(centroidWeights_[numCentroids_ - 1], w1, maxValue_, w2); } + /** + * Returns an approximation to the Probability Mass Function (PMF) of the input stream + * given a set of split points. + * + * @param splitPoints an array of m unique, monotonically increasing values + * that divide the input domain into m+1 consecutive disjoint intervals (bins). + * + * @return an array of m+1 doubles each of which is an approximation + * to the fraction of the input stream values (the mass) that fall into one of those intervals. + * @throws SketchesStateException if sketch is empty. + */ + public double[] getPMF(final double[] splitPoints) { + final double[] buckets = getCDF(splitPoints); + for (int i = buckets.length; i-- > 1; ) { + buckets[i] -= buckets[i - 1]; + } + return buckets; + } + + /** + * Returns an approximation to the Cumulative Distribution Function (CDF), which is the + * cumulative analog of the PMF, of the input stream given a set of split points. + * + * @param splitPoints an array of m unique, monotonically increasing values + * that divide the input domain into m+1 consecutive disjoint intervals. + * + * @return an array of m+1 doubles, which are a consecutive approximation to the CDF + * of the input stream given the splitPoints. The value at array position j of the returned + * CDF array is the sum of the returned values in positions 0 through j of the returned PMF + * array. This can be viewed as array of ranks of the given split points plus one more value + * that is always 1. + * @throws SketchesStateException if sketch is empty. + */ + public double[] getCDF(final double[] splitPoints) { + if (isEmpty()) { throw new SketchesStateException(QuantilesAPI.EMPTY_MSG); } + QuantilesUtil.checkDoublesSplitPointsOrder(splitPoints); + final int len = splitPoints.length + 1; + final double[] ranks = new double[len]; + for (int i = 0; i < len - 1; i++) { + ranks[i] = getRank(splitPoints[i]); + } + ranks[len - 1] = 1.0; + return ranks; + } + /** * Computes size needed to serialize the current state. * @return size in bytes needed to serialize this tdigest diff --git a/src/main/java/org/apache/datasketches/theta/PreambleUtil.java b/src/main/java/org/apache/datasketches/theta/PreambleUtil.java index 562be982c..e1d9262e6 100644 --- a/src/main/java/org/apache/datasketches/theta/PreambleUtil.java +++ b/src/main/java/org/apache/datasketches/theta/PreambleUtil.java @@ -37,6 +37,7 @@ /** * This class defines the preamble data structure and provides basic utilities for some of the key * fields. + * *

The intent of the design of this class was to isolate the detailed knowledge of the bit and * byte layout of the serialized form of the sketches derived from the Sketch class into one place. * This allows the possibility of the introduction of different serialization @@ -126,7 +127,7 @@ * 3 ||----------------------Start of Hash Table of longs---------------------------------| *

* - *

Union objects require 32 bytes of preamble plus a non-compact array of longs representing a + *

Union objects require 32 bytes of preamble plus a non-compact array of longs representing a * hash table.

* *
diff --git a/src/main/java/org/apache/datasketches/theta/Sketch.java b/src/main/java/org/apache/datasketches/theta/Sketch.java
index 05d6bbb2c..89618bc23 100644
--- a/src/main/java/org/apache/datasketches/theta/Sketch.java
+++ b/src/main/java/org/apache/datasketches/theta/Sketch.java
@@ -309,7 +309,7 @@ public static int getMaxCompactSketchBytes(final int numberOfEntries) {
    * log_base2 of the number of nominal entries, which is a power of 2.
    * @param lgNomEntries Nominal Entries
    * @return the maximum number of storage bytes required for a CompactSketch with the given
-   * nomEntries.
+   * lgNomEntries.
    */
   public static int getCompactSketchMaxBytes(final int lgNomEntries) {
     return (int)((2 << lgNomEntries) * ThetaUtil.REBUILD_THRESHOLD
diff --git a/src/main/java/org/apache/datasketches/theta/Sketches.java b/src/main/java/org/apache/datasketches/theta/Sketches.java
index dc20072dc..2e7fa0915 100644
--- a/src/main/java/org/apache/datasketches/theta/Sketches.java
+++ b/src/main/java/org/apache/datasketches/theta/Sketches.java
@@ -91,14 +91,14 @@ public static int getMaxCompactSketchBytes(final int numberOfEntries) {
 
   /**
    * Returns the maximum number of storage bytes required for a CompactSketch given the configured
-   * number of nominal entries (power of 2).
-   * @param nomEntries Nominal Entries
+   * log_base2 of the number of nominal entries, which is a power of 2.
+   * @param lgNomEntries Nominal Entries
    * @return the maximum number of storage bytes required for a CompactSketch with the given
-   * nomEntries.
+   * lgNomEntries.
    * @see Sketch#getCompactSketchMaxBytes(int)
    */
-  public static int getCompactSketchMaxBytes(final int nomEntries) {
-    return Sketch.getCompactSketchMaxBytes(nomEntries);
+  public static int getCompactSketchMaxBytes(final int lgNomEntries) {
+    return Sketch.getCompactSketchMaxBytes(lgNomEntries);
   }
 
   /**
diff --git a/src/main/java/org/apache/datasketches/theta/UnionImpl.java b/src/main/java/org/apache/datasketches/theta/UnionImpl.java
index be2980801..bac05de74 100644
--- a/src/main/java/org/apache/datasketches/theta/UnionImpl.java
+++ b/src/main/java/org/apache/datasketches/theta/UnionImpl.java
@@ -333,7 +333,7 @@ public void union(final Sketch sketchIn) {
       if (sketchIn.isOrdered() && (sketchIn instanceof CompactSketch)) { //Use early stop
         //Ordered, thus compact
         if (sketchIn.hasMemory()) {
-          final Memory skMem = ((CompactSketch) sketchIn).getMemory();
+          final Memory skMem = sketchIn.getMemory();
           final int preambleLongs = skMem.getByte(PREAMBLE_LONGS_BYTE) & 0X3F;
           for (int i = 0; i < curCountIn; i++ ) {
             final int offsetBytes = preambleLongs + i << 3;
diff --git a/src/main/java/org/apache/datasketches/theta/UpdateSketch.java b/src/main/java/org/apache/datasketches/theta/UpdateSketch.java
index 882c5e2e9..cb6854b02 100644
--- a/src/main/java/org/apache/datasketches/theta/UpdateSketch.java
+++ b/src/main/java/org/apache/datasketches/theta/UpdateSketch.java
@@ -343,6 +343,7 @@ public UpdateReturnState update(final long[] data) {
 
   /**
    * All potential updates converge here.
+   *
    * 

Don't ever call this unless you really know what you are doing!

* * @param hash the given input hash value. A hash of zero or Long.MAX_VALUE is ignored. diff --git a/src/main/java/org/apache/datasketches/tuple/Union.java b/src/main/java/org/apache/datasketches/tuple/Union.java index 653312fa0..acefa2ab5 100644 --- a/src/main/java/org/apache/datasketches/tuple/Union.java +++ b/src/main/java/org/apache/datasketches/tuple/Union.java @@ -100,8 +100,7 @@ public CompactSketch union(final Sketch tupleSketch, /** * Performs a stateful union of the internal set with the given tupleSketch. * @param tupleSketch input tuple sketch to merge with the internal set. - * - *

Nulls and empty sketches are ignored.

+ * Nulls and empty sketches are ignored. */ public void union(final Sketch tupleSketch) { if (tupleSketch == null || tupleSketch.isEmpty()) { return; } diff --git a/src/main/java/org/apache/datasketches/tuple/adouble/DoubleSummary.java b/src/main/java/org/apache/datasketches/tuple/adouble/DoubleSummary.java index e7abae0d4..a54c11afc 100644 --- a/src/main/java/org/apache/datasketches/tuple/adouble/DoubleSummary.java +++ b/src/main/java/org/apache/datasketches/tuple/adouble/DoubleSummary.java @@ -41,24 +41,28 @@ public enum Mode { /** * The aggregation mode is the summation function. + * *

New retained value = previous retained value + incoming value

*/ Sum, /** * The aggregation mode is the minimum function. + * *

New retained value = min(previous retained value, incoming value)

*/ Min, /** * The aggregation mode is the maximum function. + * *

New retained value = max(previous retained value, incoming value)

*/ Max, /** * The aggregation mode is always one. + * *

New retained value = 1.0

*/ AlwaysOne diff --git a/src/main/java/org/apache/datasketches/tuple/aninteger/IntegerSummary.java b/src/main/java/org/apache/datasketches/tuple/aninteger/IntegerSummary.java index 4c04fa2c2..72695355e 100644 --- a/src/main/java/org/apache/datasketches/tuple/aninteger/IntegerSummary.java +++ b/src/main/java/org/apache/datasketches/tuple/aninteger/IntegerSummary.java @@ -41,24 +41,28 @@ public enum Mode { /** * The aggregation mode is the summation function. + * *

New retained value = previous retained value + incoming value

*/ Sum, /** * The aggregation mode is the minimum function. + * *

New retained value = min(previous retained value, incoming value)

*/ Min, /** * The aggregation mode is the maximum function. + * *

New retained value = max(previous retained value, incoming value)

*/ Max, /** * The aggregation mode is always one. + * *

New retained value = 1

*/ AlwaysOne diff --git a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesCompactSketch.java b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesCompactSketch.java index 91d4eade4..52f827149 100644 --- a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesCompactSketch.java +++ b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesCompactSketch.java @@ -30,6 +30,7 @@ /** * Direct Compact Sketch of type ArrayOfDoubles. + * *

This implementation uses data in a given Memory that is owned and managed by the caller. * This Memory can be off-heap, which if managed properly will greatly reduce the need for * the JVM to perform garbage collection.

diff --git a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesIntersection.java b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesIntersection.java index 3dd019d74..7c1b1bf07 100644 --- a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesIntersection.java +++ b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesIntersection.java @@ -23,6 +23,7 @@ /** * Direct Intersection operation for tuple sketches of type ArrayOfDoubles. + * *

This implementation uses data in a given Memory that is owned and managed by the caller. * This Memory can be off-heap, which if managed properly will greatly reduce the need for * the JVM to perform garbage collection.

@@ -43,7 +44,7 @@ final class DirectArrayOfDoublesIntersection extends ArrayOfDoublesIntersection } @Override - protected ArrayOfDoublesQuickSelectSketch createSketch(final int nomEntries, final int numValues, + protected ArrayOfDoublesQuickSelectSketch createSketch(final int nomEntries, final int numValues, final long seed) { return new DirectArrayOfDoublesQuickSelectSketch(nomEntries, 0, 1f, numValues, seed, mem_); } diff --git a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesQuickSelectSketch.java b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesQuickSelectSketch.java index 1b4e86904..ae1aa3dc0 100644 --- a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesQuickSelectSketch.java +++ b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesQuickSelectSketch.java @@ -33,6 +33,7 @@ /** * Direct QuickSelect tuple sketch of type ArrayOfDoubles. + * *

This implementation uses data in a given Memory that is owned and managed by the caller. * This Memory can be off-heap, which if managed properly will greatly reduce the need for * the JVM to perform garbage collection.

diff --git a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesSketchIterator.java b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesSketchIterator.java index 15503fc04..dcdab1313 100644 --- a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesSketchIterator.java +++ b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesSketchIterator.java @@ -23,6 +23,7 @@ /** * Iterator over the off-heap, Direct tuple sketch of type ArrayOfDoubles (compact or hash table). + * *

This implementation uses data in a given Memory that is owned and managed by the caller. * This Memory can be off-heap, which if managed properly will greatly reduce the need for * the JVM to perform garbage collection.

diff --git a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesUnion.java b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesUnion.java index 00310f534..734019632 100644 --- a/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesUnion.java +++ b/src/main/java/org/apache/datasketches/tuple/arrayofdoubles/DirectArrayOfDoublesUnion.java @@ -27,6 +27,7 @@ /** * Direct Union operation for tuple sketches of type ArrayOfDoubles. + * *

This implementation uses data in a given Memory that is owned and managed by the caller. * This Memory can be off-heap, which if managed properly will greatly reduce the need for * the JVM to perform garbage collection.

diff --git a/src/test/java/org/apache/datasketches/tdigest/TDigestDoubleTest.java b/src/test/java/org/apache/datasketches/tdigest/TDigestDoubleTest.java index db043cff6..55baa83e7 100644 --- a/src/test/java/org/apache/datasketches/tdigest/TDigestDoubleTest.java +++ b/src/test/java/org/apache/datasketches/tdigest/TDigestDoubleTest.java @@ -41,6 +41,8 @@ public void empty() { assertThrows(SketchesStateException.class, () -> td.getMaxValue()); assertThrows(SketchesStateException.class, () -> td.getRank(0)); assertThrows(SketchesStateException.class, () -> td.getQuantile(0.5)); + assertThrows(SketchesStateException.class, () -> td.getPMF(new double[]{0})); + assertThrows(SketchesStateException.class, () -> td.getCDF(new double[]{0})); } @Test @@ -65,9 +67,6 @@ public void manyValues() { final TDigestDouble td = new TDigestDouble(); final int n = 10000; for (int i = 0; i < n; i++) td.update(i); -// System.out.println(td.toString(true)); -// td.compress(); -// System.out.println(td.toString(true)); assertFalse(td.isEmpty()); assertEquals(td.getTotalWeight(), n); assertEquals(td.getMinValue(), 0); @@ -82,6 +81,14 @@ public void manyValues() { assertEquals(td.getQuantile(0.9), n * 0.9, n * 0.9 * 0.01); assertEquals(td.getQuantile(0.95), n * 0.95, n * 0.95 * 0.01); assertEquals(td.getQuantile(1), n - 1); + final double[] pmf = td.getPMF(new double[] {n / 2}); + assertEquals(pmf.length, 2); + assertEquals(pmf[0], 0.5, 0.0001); + assertEquals(pmf[1], 0.5, 0.0001); + final double[] cdf = td.getCDF(new double[] {n / 2}); + assertEquals(cdf.length, 2); + assertEquals(cdf[0], 0.5, 0.0001); + assertEquals(cdf[1], 1.0); } @Test diff --git a/tools/SketchesCheckstyle.xml b/tools/SketchesCheckstyle.xml index 873a878a0..4e2471d91 100644 --- a/tools/SketchesCheckstyle.xml +++ b/tools/SketchesCheckstyle.xml @@ -230,7 +230,7 @@ under the License. - +