README.md

training-week-2019

Materials for the 2019 incoming student training week. Trello. Slack.

Primary location: PG6 112

Breakout session location: AHC4

Before the Bootcamp

Make sure you complete the FIU Neuro Onboarding!

We also recommend that you at least start learning some programming with Codecademy. The free courses "Learn the Command Line", "Learn Python 2" (although we use Python 3), and "Learn git" are all extremely useful.

Schedule

Thursday, August 15: Introduction and Resources

Time	Title	Instructor(s)
09:30	Welcome and Overview	Dr. Angela Laird
10:30	Dependencies	Taylor Salo
12:30	Lunch Break
13:30	Open Science	Dr. Angela Laird
14:30	FAIR Principles	Dr. Angela Laird
15:30	Program Resources	Drs. Anthony Dick and Aaron Mattfeld
16:00	Community Resources	Taylor Salo

Friday, August 16: Introduction to Programming

Time	Title	Instructor(s)
09:30	Basic Command Line	Dr. Michael Riedel
10:30	Basics of HPC/SLURM	Dr. Michael Riedel
11:30	Basic Python	Amanda Renfro
12:30	Lunch Break
13:30	Working with Python Packages	Amanda Renfro
14:30	Data Visualization	Katherine Bottenhorn
15:30	Overflow Time/Programming Practice

Monday, August 19: MRI and Preprocessing

Time	Title	Instructor(s)
09:30	MRI Physics	Dr. Robert Laird
10:00	MRI Data Types	Dr. Angela Laird
10:30	BIDS	Dr. Michael Riedel
11:30	Working with Neuroimaging Data in Python	Taylor Salo
12:30	Lunch Break
13:30	fMRI Preprocessing	Dr. Aaron Mattfeld
15:30	Data Quality Control	Dr. Michael Riedel

Wednesday, August 21: Analysis

Time	Title	Instructor(s)
09:30	fMRI Modeling and GLMs	Dr. Jessica Bartley
12:30	Lunch Break
13:30	Structural MRI Analysis	Dr. Anthony Dick
13:30	Breakout Session: ID Conn	Katherine Bottenhorn

Friday, August 23: Version Control and More Python

Time	Title	Instructor(s)
09:30	Basics of Docker/Singularity	Adam Kimbler
10:30	git/GitHub	Katherine Bottenhorn
12:30	Lunch Break
13:30	git/GitHub, continued	Katherine Bottenhorn
14:30	Overflow Time/General Q&A
15:30	Closing Comments	Dr. Angela Laird