CB003.pbs

#!/bin/bash
#PBS -j oe
#PBS -l walltime=12:00:00
#PBS -l select=1:ncpus=10:mem=120GB:mpiprocs=10
#PBS -P hctsa
#PBS -V

subject=CB003
batch_number=2
n_jobs=1

echo "Now running source localization for $subject"

# Artemis modules
module load anaconda3
module load python/3.9.15

# Call preprocessing script
MEG_repo_root=/project/hctsa/annie/github/cogitate-msp1/coglib
Cogitate_repo_root=/project/hctsa/annie/github/Cogitate_Connectivity_2024/MEG_preprocessing
bids_root=/project/hctsa/annie/data/Cogitate_Batch${batch_number}/MEG_Data/
visit="1"
record="run"

################################# Source localization #################################

python3 $Cogitate_repo_root/extract_time_series_from_MEG.py --sub $subject --bids_root $bids_root --n_jobs $n_jobs --region_option hypothesis_driven